RchiOBHm_Chr4g0387671

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0015751
Physical Location & Seq
Forward (+)
2906541 .. 2907270
730 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ36096

Sequence Viewer

Length: 237 bp
ATGAGCGGCAGTTCGATTCCAACAAGAGGCCTCCTCACAGAGCTGGACTCAAAGCTGCTGTTGCATTGCCCGTTGCTTCTGAGCAATCTCAATTTGCCTCCAAACAAAACAACAAGGCGTACCCTCGCCGGCGCCCTCGCTGTACTCCGGGAAATACTGGTCCACAATCTCGTGATACTCCGCCGAAAAGAGATACTGGTATTGCCAGTGAGAAGGAATGGGGTATTAGCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.59

Weight (kDa)

11.24

Isoelectric Point (pI)

82.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 131
AccBSI CCGCTC 1 cut(s) 6
AciI CCGC 2 cut(s) 6, 181
AcyI GRCGYC 1 cut(s) 132
AfaI GTAC 2 cut(s) 121, 144
AfiI CCNNNNNNNGG 1 cut(s) 26
AluBI AGCT 3 cut(s) 43, 55, 230
AluI AGCT 3 cut(s) 43, 55, 230
AoxI GGCC 1 cut(s) 28
ApeKI GCWGC 1 cut(s) 55
AspLEI GCGC 1 cut(s) 134
AspS9I GGNCC 1 cut(s) 160
AsuC2I CCSGG 1 cut(s) 149
AvaII GGWCC 1 cut(s) 160
BanI GGYRCC 1 cut(s) 131
BauI CACGAG 1 cut(s) 170
BbvI GCAGC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 149
BfoI RGCGCY 1 cut(s) 135
BisI GCNGC 2 cut(s) 7, 56
BlsI GCNGC 2 cut(s) 8, 57
Bme1390I CCNGG 1 cut(s) 149
Bme18I GGWCC 1 cut(s) 160
BmgT120I GGNCC 1 cut(s) 160
BmiI GGNNCC 1 cut(s) 133
BmrFI CCNGG 1 cut(s) 149
BplI GAGNNNNNCTC 4 cut(s) 18, 50, 32, 64
BpuMI CCSGG 1 cut(s) 149
BsaHI GRCGYC 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 26
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 3 cut(s) 162, 201, 206
Bse3DI GCAATG 1 cut(s) 64
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 3 cut(s) 162, 201, 206
BseRI GAGGAG 1 cut(s) 23
BseXI GCAGC 1 cut(s) 42
BshFI GGCC 1 cut(s) 30
BshNI GGYRCC 1 cut(s) 131
BsiSI CCGG 2 cut(s) 129, 148
BslI CCNNNNNNNGG 1 cut(s) 26
BsnI GGCC 1 cut(s) 30
BspACI CCGC 2 cut(s) 6, 181
BspANI GGCC 1 cut(s) 30
BspCNI CTCAG 1 cut(s) 72
BspLI GGNNCC 1 cut(s) 133
BspT107I GGYRCC 1 cut(s) 131
BsrBI CCGCTC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 64
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 3 cut(s) 162, 201, 206
BssAI RCCGGY 1 cut(s) 128
BssNI GRCGYC 1 cut(s) 132
BssSI CACGAG 1 cut(s) 170
Bst2BI CACGAG 1 cut(s) 170
BstACI GRCGYC 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 130
BstDEI CTNAG 1 cut(s) 80
BstH2I RGCGCY 1 cut(s) 135
BstHHI GCGC 1 cut(s) 134
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstSCI CCNGG 1 cut(s) 147
BstV1I GCAGC 1 cut(s) 42
BsuRI GGCC 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 213
Cac8I GCNNGC 1 cut(s) 130
CfoI GCGC 1 cut(s) 134
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 1 cut(s) 160
Csp6I GTAC 2 cut(s) 120, 143
CviJI RGCY 4 cut(s) 30, 43, 55, 230
CviKI_1 RGCY 4 cut(s) 30, 43, 55, 230
CviQI GTAC 2 cut(s) 120, 143
DdeI CTNAG 1 cut(s) 80
DinI GGCGCC 1 cut(s) 133
EciI GGCGGA 1 cut(s) 170
Eco147I AGGCCT 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 160
EgeI GGCGCC 1 cut(s) 133
EheI GGCGCC 1 cut(s) 133
Fnu4HI GCNGC 2 cut(s) 7, 56
Fsp4HI GCNGC 2 cut(s) 7, 56
GlaI GCGC 1 cut(s) 133
GluI GCNGC 2 cut(s) 7, 56
HaeII RGCGCY 1 cut(s) 135
HaeIII GGCC 1 cut(s) 30
HapII CCGG 2 cut(s) 129, 148
HhaI GCGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 132
Hin6I GCGC 1 cut(s) 132
HinP1I GCGC 1 cut(s) 132
HinfI GANTC 2 cut(s) 16, 47
HpaII CCGG 2 cut(s) 129, 148
Hpy166II GTNNAC 1 cut(s) 163
Hpy188I TCNGA 1 cut(s) 81
Hpy188III TCNNGA 1 cut(s) 172
Hpy8I GTNNAC 1 cut(s) 163
HpyAV CCTTC 1 cut(s) 207
HpyCH4V TGCA 1 cut(s) 64
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 80
Hsp92I GRCGYC 1 cut(s) 132
HspAI GCGC 1 cut(s) 132
KasI GGCGCC 1 cut(s) 131
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 29, 142, 143, 161, 182, 219
Lsp1109I GCAGC 1 cut(s) 42
MbiI CCGCTC 1 cut(s) 6
MluCI AATT 1 cut(s) 91
Mly113I GGCGCC 1 cut(s) 132
MlyI GAGTC 1 cut(s) 41
MmeI TCCRAC 1 cut(s) 44
MnlI CCTC 6 cut(s) 20, 41, 44, 108, 134, 146
MreI CGCCGGCG 1 cut(s) 128
MroNI GCCGGC 1 cut(s) 128
MseI TTAA 1 cut(s) 235
MspI CCGG 2 cut(s) 129, 148
MspR9I CCNGG 1 cut(s) 149
MwoI GCNNNNNNNGC 1 cut(s) 61
NaeI GCCGGC 1 cut(s) 130
NarI GGCGCC 1 cut(s) 132
NciI CCSGG 1 cut(s) 149
NgoMIV GCCGGC 1 cut(s) 128
NlaIV GGNNCC 1 cut(s) 133
PceI AGGCCT 1 cut(s) 30
PdiI GCCGGC 1 cut(s) 130
PfeI GAWTC 1 cut(s) 16
PfoI TCCNGGA 1 cut(s) 147
PkrI GCNGC 2 cut(s) 8, 57
PleI GAGTC 1 cut(s) 41
PluTI GGCGCC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 41
PspN4I GGNNCC 1 cut(s) 133
PspPI GGNCC 1 cut(s) 160
RsaI GTAC 2 cut(s) 121, 144
RsaNI GTAC 2 cut(s) 120, 143
SaqAI TTAA 1 cut(s) 235
SatI GCNGC 2 cut(s) 7, 56
Sau96I GGNCC 1 cut(s) 160
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 149
SetI ASST 3 cut(s) 45, 57, 232
SfoI GGCGCC 1 cut(s) 133
SgrAI CRCCGGYG 1 cut(s) 128
SinI GGWCC 1 cut(s) 160
Sse9I AATT 1 cut(s) 91
SseBI AGGCCT 1 cut(s) 30
SsiI CCGC 2 cut(s) 6, 181
SspDI GGCGCC 1 cut(s) 131
StuI AGGCCT 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 147
TaqI TCGA 1 cut(s) 14
TasI AATT 1 cut(s) 91
TatI WGTACW 1 cut(s) 142
TauI GCSGC 1 cut(s) 9
TfiI GAWTC 1 cut(s) 16
Tru1I TTAA 1 cut(s) 235
Tru9I TTAA 1 cut(s) 235
TscAI CASTG 1 cut(s) 213
TseI GCWGC 1 cut(s) 55
TspRI CASTG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.