Rh7BG041700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0015751
Physical Location & Seq
Reverse (-)
2661924 .. 2665636
3713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG041700.1

Sequence Viewer

Length: 333 bp
ATGGTGGATGTTCCAGAGTTCAAGGCCCCCATTTCGGAGACGAATCGGTGCAACTCTGAAAGAAGTGCGCTACGGTTTCCGAGAGGAAAAAGTGCGATGAGTGGCAGTTCGATTCCAACAAGAGGCCTCCTCACAGAGCTGGACTCAAAGCTGCTGCTGCATTGCCCGTTGCTTCTGAGCAATCTCAATTTGCCTCCAAACAAAACAGCAAGGTGTACCCTCGCCGACGCCCTCGCTGTACTCCAGGAAATACTGGTCCACAATCTCATGATACTCCGCCGAAAAGAGATAATGGTATTGCCAGTGAGAAGGAATGGGGTATTAGCTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.16

Weight (kDa)

9.69

Isoelectric Point (pI)

69.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 277
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 2 cut(s) 217, 240
AfiI CCNNNNNNNGG 2 cut(s) 34, 122
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 3 cut(s) 139, 151, 326
AluI AGCT 3 cut(s) 139, 151, 326
Alw26I GTCTC 1 cut(s) 32
AoxI GGCC 2 cut(s) 24, 124
ApeKI GCWGC 3 cut(s) 151, 154, 157
AspLEI GCGC 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 25, 256
AvaII GGWCC 1 cut(s) 256
BbvI GCAGC 3 cut(s) 138, 141, 144
BciT130I CCWGG 1 cut(s) 245
BcoDI GTCTC 1 cut(s) 32
BisI GCNGC 3 cut(s) 152, 155, 158
BlsI GCNGC 3 cut(s) 153, 156, 159
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 256
BmgT120I GGNCC 2 cut(s) 25, 256
BmiI GGNNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 245
BplI GAGNNNNNCTC 4 cut(s) 114, 146, 128, 160
BpmI CTGGAG 1 cut(s) 227
BsaHI GRCGYC 1 cut(s) 228
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 122
Bse1I ACTGG 2 cut(s) 258, 302
Bse3DI GCAATG 1 cut(s) 160
BseBI CCWGG 1 cut(s) 245
BseGI GGATG 1 cut(s) 13
BseLI CCNNNNNNNGG 2 cut(s) 34, 122
BseMI GCAATG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 167
BseNI ACTGG 2 cut(s) 258, 302
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 138, 141, 144
BshFI GGCC 2 cut(s) 26, 126
BslI CCNNNNNNNGG 2 cut(s) 34, 122
BsmAI GTCTC 1 cut(s) 32
BsmBI CGTCTC 1 cut(s) 32
BsnI GGCC 2 cut(s) 26, 126
BspACI CCGC 1 cut(s) 277
BspANI GGCC 2 cut(s) 26, 126
BspCNI CTCAG 1 cut(s) 168
BspHI TCATGA 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 27
BsrDI GCAATG 1 cut(s) 160
BsrI ACTGG 2 cut(s) 258, 302
BssNI GRCGYC 1 cut(s) 228
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 228
BstDEI CTNAG 1 cut(s) 176
BstF5I GGATG 1 cut(s) 13
BstHHI GCGC 1 cut(s) 70
BstMAI GTCTC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 157
BstNI CCWGG 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 243
BstV1I GCAGC 3 cut(s) 138, 141, 144
BsuRI GGCC 2 cut(s) 26, 126
BtgZI GCGATG 1 cut(s) 110
BtsCI GGATG 1 cut(s) 13
BtsIMutI CAGTG 1 cut(s) 309
CciI TCATGA 1 cut(s) 267
CfoI GCGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 25, 256
CseI GACGC 1 cut(s) 236
Csp6I GTAC 2 cut(s) 216, 239
CviAII CATG 1 cut(s) 268
CviJI RGCY 5 cut(s) 26, 126, 139, 151, 326
CviKI_1 RGCY 5 cut(s) 26, 126, 139, 151, 326
CviQI GTAC 2 cut(s) 216, 239
DdeI CTNAG 1 cut(s) 176
EciI GGCGGA 1 cut(s) 266
Eco147I AGGCCT 1 cut(s) 126
Eco47I GGWCC 1 cut(s) 256
EcoO109I RGGNCCY 1 cut(s) 25
EcoRII CCWGG 1 cut(s) 243
Esp3I CGTCTC 1 cut(s) 32
FaeI CATG 1 cut(s) 271
FaiI YATR 1 cut(s) 269
FatI CATG 1 cut(s) 267
Fnu4HI GCNGC 3 cut(s) 152, 155, 158
FokI GGATG 1 cut(s) 20
Fsp4HI GCNGC 3 cut(s) 152, 155, 158
GlaI GCGC 1 cut(s) 69
GluI GCNGC 3 cut(s) 152, 155, 158
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 26, 126
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 70
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 1 cut(s) 271
Hin6I GCGC 1 cut(s) 68
HinP1I GCGC 1 cut(s) 68
HinfI GANTC 3 cut(s) 43, 112, 143
Hpy166II GTNNAC 2 cut(s) 216, 259
Hpy188I TCNGA 4 cut(s) 37, 58, 81, 177
Hpy188III TCNNGA 2 cut(s) 14, 268
Hpy8I GTNNAC 2 cut(s) 216, 259
Hpy99I CGWCG 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 303
HpyCH4III ACNGT 1 cut(s) 75
HpyCH4V TGCA 2 cut(s) 51, 160
HpyF10VI GCNNNNNNNGC 1 cut(s) 157
HpyF3I CTNAG 1 cut(s) 176
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 1 cut(s) 271
HspAI GCGC 1 cut(s) 68
LpnPI CCDG 6 cut(s) 27, 125, 230, 239, 257, 315
Lsp1109I GCAGC 3 cut(s) 138, 141, 144
MluCI AATT 1 cut(s) 187
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 7 cut(s) 77, 116, 137, 140, 204, 230, 242
MseI TTAA 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 157
NlaIII CATG 1 cut(s) 271
NlaIV GGNNCC 1 cut(s) 27
PagI TCATGA 1 cut(s) 267
PceI AGGCCT 1 cut(s) 126
PfeI GAWTC 2 cut(s) 43, 112
PfoI TCCNGGA 1 cut(s) 243
PkrI GCNGC 3 cut(s) 153, 156, 159
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 243
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 25, 256
RsaI GTAC 2 cut(s) 217, 240
RsaNI GTAC 2 cut(s) 216, 239
SaqAI TTAA 1 cut(s) 331
SatI GCNGC 3 cut(s) 152, 155, 158
Sau96I GGNCC 2 cut(s) 25, 256
SchI GAGTC 1 cut(s) 137
ScrFI CCNGG 1 cut(s) 245
SetI ASST 4 cut(s) 141, 153, 215, 328
SinI GGWCC 1 cut(s) 256
Sse9I AATT 1 cut(s) 187
SseBI AGGCCT 1 cut(s) 126
SsiI CCGC 1 cut(s) 277
StuI AGGCCT 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 187
TatI WGTACW 1 cut(s) 238
TfiI GAWTC 2 cut(s) 43, 112
Tru1I TTAA 1 cut(s) 331
Tru9I TTAA 1 cut(s) 331
TscAI CASTG 1 cut(s) 309
TseI GCWGC 3 cut(s) 151, 154, 157
TspRI CASTG 1 cut(s) 309
VpaK11BI GGWCC 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.