Rh5BG426600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015751
Physical Location & Seq
Forward (+)
69070810 .. 69072293
1484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG426600.1

Sequence Viewer

Length: 312 bp
ATGTTCCAGAGTTCAAGGCCCCCCATTTCGGAGACTAATCGGAGCAACTCCGAAAGAAGTGCGCTACGGTTTCCGAGAGGAAAAAGTGCGATGAGTGGCAGTTCGATTCCAACAAGAGGCCTCCTCACAGAGCTGGACTCAAAGCTGCTACTGCATTGCCCATTGCTTCTGAGTAATCTCAATTTGCCTCCAAACAAAACAGCAAGGTGTACCCTCGCCGGCGCCCTCGTTGTACTCCGGGAAATACTGGTCCACAATCCCGTGATACTCCGCCGAAAAGAGTGGTGGGAGAAAAGTGACTGGACCGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

103

Amino Acids

11.56

Weight (kDa)

10.49

Isoelectric Point (pI)

67.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AciI CCGC 1 cut(s) 271
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 211, 234
AfiI CCNNNNNNNGG 2 cut(s) 28, 116
AgsI TTSAA 1 cut(s) 15
AluBI AGCT 2 cut(s) 133, 145
AluI AGCT 2 cut(s) 133, 145
Alw26I GTCTC 1 cut(s) 26
AoxI GGCC 2 cut(s) 17, 118
ApeKI GCWGC 1 cut(s) 145
AspLEI GCGC 2 cut(s) 64, 224
AspS9I GGNCC 3 cut(s) 18, 250, 303
AsuC2I CCSGG 1 cut(s) 239
AvaII GGWCC 2 cut(s) 250, 303
BanI GGYRCC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 132
BcgI CGANNNNNNTGC 2 cut(s) 41, 75
BcnI CCSGG 1 cut(s) 239
BcoDI GTCTC 1 cut(s) 26
BfoI RGCGCY 1 cut(s) 225
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
Bme1390I CCNGG 1 cut(s) 239
Bme18I GGWCC 2 cut(s) 250, 303
BmgT120I GGNCC 3 cut(s) 18, 250, 303
BmiI GGNNCC 2 cut(s) 20, 223
BmrFI CCNGG 1 cut(s) 239
BplI GAGNNNNNCTC 4 cut(s) 108, 140, 122, 154
BpuMI CCSGG 1 cut(s) 239
BsaHI GRCGYC 1 cut(s) 222
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 2 cut(s) 28, 116
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 252, 305
Bse3DI GCAATG 2 cut(s) 154, 161
BseLI CCNNNNNNNGG 2 cut(s) 28, 116
BseMI GCAATG 2 cut(s) 154, 161
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 252, 305
BseRI GAGGAG 1 cut(s) 113
BseXI GCAGC 1 cut(s) 132
BshFI GGCC 2 cut(s) 19, 120
BshNI GGYRCC 1 cut(s) 221
BsiSI CCGG 3 cut(s) 219, 238, 306
BslI CCNNNNNNNGG 2 cut(s) 28, 116
BsmAI GTCTC 1 cut(s) 26
BsnI GGCC 2 cut(s) 19, 120
BspACI CCGC 1 cut(s) 271
BspANI GGCC 2 cut(s) 19, 120
BspCNI CTCAG 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 20, 223
BspT107I GGYRCC 1 cut(s) 221
BsrDI GCAATG 2 cut(s) 154, 161
BsrFI RCCGGY 1 cut(s) 218
BsrI ACTGG 2 cut(s) 252, 305
BssAI RCCGGY 1 cut(s) 218
BssNI GRCGYC 1 cut(s) 222
Bst4CI ACNGT 1 cut(s) 69
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 1 cut(s) 220
BstDEI CTNAG 1 cut(s) 170
BstH2I RGCGCY 1 cut(s) 225
BstHHI GCGC 2 cut(s) 64, 224
BstMAI GTCTC 1 cut(s) 26
BstMWI GCNNNNNNNGC 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 132
BsuRI GGCC 2 cut(s) 19, 120
BtgZI GCGATG 1 cut(s) 104
Cac8I GCNNGC 1 cut(s) 220
CfoI GCGC 2 cut(s) 64, 224
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 3 cut(s) 18, 250, 303
Csp6I GTAC 2 cut(s) 210, 233
CviJI RGCY 4 cut(s) 19, 120, 133, 145
CviKI_1 RGCY 4 cut(s) 19, 120, 133, 145
CviQI GTAC 2 cut(s) 210, 233
DdeI CTNAG 1 cut(s) 170
DinI GGCGCC 1 cut(s) 223
EciI GGCGGA 1 cut(s) 260
Eco147I AGGCCT 1 cut(s) 120
Eco47I GGWCC 2 cut(s) 250, 303
EcoO109I RGGNCCY 1 cut(s) 18
EgeI GGCGCC 1 cut(s) 223
EheI GGCGCC 1 cut(s) 223
Fnu4HI GCNGC 1 cut(s) 146
Fsp4HI GCNGC 1 cut(s) 146
GlaI GCGC 2 cut(s) 63, 223
GluI GCNGC 1 cut(s) 146
HaeII RGCGCY 1 cut(s) 225
HaeIII GGCC 2 cut(s) 19, 120
HapII CCGG 3 cut(s) 219, 238, 306
HhaI GCGC 2 cut(s) 64, 224
Hin1I GRCGYC 1 cut(s) 222
Hin6I GCGC 2 cut(s) 62, 222
HinP1I GCGC 2 cut(s) 62, 222
HinfI GANTC 2 cut(s) 106, 137
HpaII CCGG 3 cut(s) 219, 238, 306
Hpy166II GTNNAC 2 cut(s) 210, 253
Hpy188I TCNGA 5 cut(s) 31, 42, 52, 75, 171
Hpy188III TCNNGA 1 cut(s) 7
Hpy8I GTNNAC 2 cut(s) 210, 253
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 151
HpyF3I CTNAG 1 cut(s) 170
Hsp92I GRCGYC 1 cut(s) 222
HspAI GCGC 2 cut(s) 62, 222
KasI GGCGCC 1 cut(s) 221
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 6 cut(s) 20, 119, 232, 233, 251, 286
Lsp1109I GCAGC 1 cut(s) 132
MaeIII GTNAC 1 cut(s) 296
MluCI AATT 1 cut(s) 181
Mly113I GGCGCC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 131
MmeI TCCRAC 1 cut(s) 134
MnlI CCTC 7 cut(s) 71, 110, 131, 134, 198, 224, 236
MreI CGCCGGCG 1 cut(s) 218
MroNI GCCGGC 1 cut(s) 218
MspI CCGG 3 cut(s) 219, 238, 306
MspR9I CCNGG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 151
NaeI GCCGGC 1 cut(s) 220
NarI GGCGCC 1 cut(s) 222
NciI CCSGG 1 cut(s) 239
NgoMIV GCCGGC 1 cut(s) 218
NlaIV GGNNCC 2 cut(s) 20, 223
NmuCI GTSAC 1 cut(s) 296
PceI AGGCCT 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 1 cut(s) 106
PfoI TCCNGGA 1 cut(s) 237
PkrI GCNGC 1 cut(s) 147
PleI GAGTC 1 cut(s) 131
PluTI GGCGCC 1 cut(s) 225
PpsI GAGTC 1 cut(s) 131
PspN4I GGNNCC 2 cut(s) 20, 223
PspPI GGNCC 3 cut(s) 18, 250, 303
RsaI GTAC 2 cut(s) 211, 234
RsaNI GTAC 2 cut(s) 210, 233
SatI GCNGC 1 cut(s) 146
Sau96I GGNCC 3 cut(s) 18, 250, 303
SchI GAGTC 1 cut(s) 131
ScrFI CCNGG 1 cut(s) 239
SetI ASST 3 cut(s) 135, 147, 209
SfoI GGCGCC 1 cut(s) 223
SgrAI CRCCGGYG 1 cut(s) 218
SinI GGWCC 2 cut(s) 250, 303
Sse9I AATT 1 cut(s) 181
SseBI AGGCCT 1 cut(s) 120
SsiI CCGC 1 cut(s) 271
SspDI GGCGCC 1 cut(s) 221
StuI AGGCCT 1 cut(s) 120
StyD4I CCNGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 104
TasI AATT 1 cut(s) 181
TatI WGTACW 1 cut(s) 232
TfiI GAWTC 1 cut(s) 106
TseFI GTSAC 1 cut(s) 296
TseI GCWGC 1 cut(s) 145
Tsp45I GTSAC 1 cut(s) 296
VpaK11BI GGWCC 2 cut(s) 250, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.