RchiOBHm_Chr4g0438341

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0018028
Physical Location & Seq
Reverse (-)
61114233 .. 61116469
2237 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1005 bp
ATGAACAGTACAAGCAGTTTAGTTCTTCGATCACTGAATTCTGCTTCATATAGTTTAGAAGTTGACGGGGAACAATATGCTATATTGATCTGGCTCTTTAGAGGAGGCTTTTTGATTTGCAGGAGGATTCTTATGTCACAGAGGAGCATTTGCTGGCAATTTCAGATTTTGCAGGAGTGGCGTGCAGTTTCAAAAGATTATAATGAAGCAAGGCAGCGGTGGTGTAAAAGTAAGCTACTTCCGATGCTCTTGATCCCATGTACTTCCGAAGAAAAGCTGAGACTGTACAGCATTGCCGAAAGAGAAGTCTACAGCAATATTGAGTTACCATTGCGTTGTAATAATTCTAGGAGGTGTTGTGGCTCCAACTACGACAGTGGTGGTTGGTTGACCATAGTAGATCTAGTAGAGCGTGAGTTGCCATATTTTGATATAACTCTCACGAACCCTTTCAGAAAAGAAGTGGCACCCATTCATCTTCCTCGTTTGCAATCCAAATATTTTTCTCAAAAAGGACGTCGGCAGCTCCCGAAGGTTATATTATCCGGTGATCCCACATTGAATCCCGACAGTTTTGTGGTTTTAGCAATCAATAGTCAATTTCAATATGGACACCCGGTGTCTTCCATTAAGGGACTAAATAGTTATTGGATTCATTGGGACTTTGTATATAACGGTACTGATGCCATAGTTTATAAAAGCCAGATCTACTTGGTTACTGCTGATAGATGGCTTGCTTTGTTGGATGTTGATCAGGCAATAACAAACATATTCCTTCCGCCTCAACCACTTCTTCCGCCAGCTAAGGTGTATCTTGTAGAATCTACACGGGGAGACCTGTTGCTTGTTCAAAGATTCATGGAACTAAAAAATAAGAATGTGAACGGTTTGCATCAGAAATTTTGGACCAATAGCTTCGTTATTCACAAGGTGGTGTTCATCAAGAGAGACAGAGCTGGACGGAGATATAAACTACTTAAAGTTTACAGAGGGGACGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF295 F-box F-box-like

Protein Analysis

334

Amino Acids

38.92

Weight (kDa)

9.47

Isoelectric Point (pI)

47.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Beta-prop_KIB1-4 PF03478 95 - 310 7.3e-21 KIB1-4 beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018028)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g30040 FvH4_4g30041 FvH4_4g30110
rosa_chinensis RchiOBHm_Chr4g0438341
rosa_laevigata RLG00000006369
rosa_multiflora Rmu_sc0002327.1_g000028 Rmu_sc0025676.1_g000002
rosa_rugosa Rorug04G0309100
rosa_samantha Rh4AG360200
rosa_wichuraiana Rw0G006480 Rw0G016430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 201, 696
AatII GACGTC 1 cut(s) 520
AccB1I GGYRCC 1 cut(s) 466
AccI GTMKAC 1 cut(s) 309
AciI CCGC 3 cut(s) 217, 779, 797
AclWI GGATC 2 cut(s) 247, 545
AcsI RAATTY 2 cut(s) 37, 899
AcyI GRCGYC 1 cut(s) 517
AdeI CACNNNGTG 2 cut(s) 619, 931
AfaI GTAC 4 cut(s) 10, 262, 287, 679
AgsI TTSAA 4 cut(s) 192, 562, 605, 851
AluBI AGCT 6 cut(s) 235, 277, 526, 803, 915, 956
AluI AGCT 6 cut(s) 235, 277, 526, 803, 915, 956
Alw26I GTCTC 3 cut(s) 274, 828, 942
AlwI GGATC 2 cut(s) 247, 545
ApeKI GCWGC 2 cut(s) 214, 523
ApoI RAATTY 2 cut(s) 37, 899
ArsI GACNNNNNNTTYG 4 cut(s) 291, 323, 502, 534
Asp700I GAANNNNTTC 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 906
AsuC2I CCSGG 1 cut(s) 617
AsuHPI GGTGA 1 cut(s) 560
AvaII GGWCC 1 cut(s) 906
BanI GGYRCC 1 cut(s) 466
BbsI GAAGAC 1 cut(s) 615
BbvI GCAGC 2 cut(s) 226, 535
BccI CCATC 1 cut(s) 723
BclI TGATCA 1 cut(s) 751
BcnI CCSGG 1 cut(s) 617
BcoDI GTCTC 3 cut(s) 274, 828, 942
BfaI CTAG 2 cut(s) 348, 404
BfmI CTRYAG 1 cut(s) 310
BglII AGATCT 2 cut(s) 400, 705
BisI GCNGC 2 cut(s) 215, 524
BlsI GCNGC 2 cut(s) 216, 525
Bme1390I CCNGG 1 cut(s) 617
Bme18I GGWCC 1 cut(s) 906
BmgT120I GGNCC 1 cut(s) 906
BmiI GGNNCC 2 cut(s) 364, 468
BmrFI CCNGG 1 cut(s) 617
BmsI GCATC 3 cut(s) 234, 673, 901
BpiI GAAGAC 1 cut(s) 615
Bpu10I CCTNAGC 1 cut(s) 804
BpuMI CCSGG 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 750
BsaHI GRCGYC 1 cut(s) 517
BsaI GGTCTC 1 cut(s) 828
BsaWI WCCGGW 1 cut(s) 545
BsaXI ACNNNNNCTCC 2 cut(s) 343, 373
Bse3DI GCAATG 2 cut(s) 291, 329
Bse8I GATNNNNATC 1 cut(s) 750
BseGI GGATG 1 cut(s) 751
BseJI GATNNNNATC 1 cut(s) 750
BseMI GCAATG 2 cut(s) 291, 329
BseMII CTCAG 1 cut(s) 269
BseRI GAGGAG 2 cut(s) 117, 157
BseXI GCAGC 2 cut(s) 226, 535
BsgI GTGCAG 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 466
BsiSI CCGG 2 cut(s) 546, 617
BslFI GGGAC 2 cut(s) 648, 674
BsmAI GTCTC 3 cut(s) 274, 828, 942
BsmFI GGGAC 2 cut(s) 648, 674
Bso31I GGTCTC 1 cut(s) 828
Bsp1407I TGTACA 1 cut(s) 285
Bsp143I GATC 7 cut(s) 29, 87, 252, 400, 550, 705, 751
BspACI CCGC 3 cut(s) 217, 779, 797
BspCNI CTCAG 1 cut(s) 270
BspLI GGNNCC 2 cut(s) 364, 468
BspPI GGATC 2 cut(s) 247, 545
BspT107I GGYRCC 1 cut(s) 466
BspTNI GGTCTC 1 cut(s) 828
BsrDI GCAATG 2 cut(s) 291, 329
BsrGI TGTACA 1 cut(s) 285
BssMI GATC 7 cut(s) 29, 87, 252, 400, 550, 705, 751
BssNI GRCGYC 1 cut(s) 517
Bst4CI ACNGT 6 cut(s) 8, 285, 377, 572, 677, 887
BstACI GRCGYC 1 cut(s) 517
BstAUI TGTACA 1 cut(s) 285
BstC8I GCNNGC 4 cut(s) 155, 183, 735, 801
BstDEI CTNAG 2 cut(s) 278, 804
BstF5I GGATG 1 cut(s) 751
BstKTI GATC 7 cut(s) 32, 90, 255, 403, 553, 708, 754
BstMAI GTCTC 3 cut(s) 274, 828, 942
BstMBI GATC 7 cut(s) 29, 87, 252, 400, 550, 705, 751
BstMWI GCNNNNNNNGC 2 cut(s) 178, 418
BstSCI CCNGG 1 cut(s) 615
BstSFI CTRYAG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 226, 535
BstV2I GAAGAC 1 cut(s) 615
BstX2I RGATCY 2 cut(s) 400, 705
BstYI RGATCY 2 cut(s) 400, 705
BtsCI GGATG 1 cut(s) 751
BtsIMutI CAGTG 2 cut(s) 32, 382
Cac8I GCNNGC 4 cut(s) 155, 183, 735, 801
Cfr13I GGNCC 1 cut(s) 906
Csp6I GTAC 4 cut(s) 9, 261, 286, 678
CviAII CATG 2 cut(s) 258, 859
CviQI GTAC 4 cut(s) 9, 261, 286, 678
DdeI CTNAG 2 cut(s) 278, 804
DpnI GATC 7 cut(s) 31, 89, 254, 402, 552, 707, 753
DpnII GATC 7 cut(s) 29, 87, 252, 400, 550, 705, 751
DraIII CACNNNGTG 2 cut(s) 619, 931
EciI GGCGGA 2 cut(s) 768, 786
Eco31I GGTCTC 1 cut(s) 828
Eco47I GGWCC 1 cut(s) 906
EcoRI GAATTC 1 cut(s) 37
FaeI CATG 2 cut(s) 261, 862
FaqI GGGAC 2 cut(s) 648, 674
FatI CATG 2 cut(s) 257, 858
FbaI TGATCA 1 cut(s) 751
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 215, 524
FokI GGATG 1 cut(s) 758
Fsp4HI GCNGC 2 cut(s) 215, 524
FspBI CTAG 2 cut(s) 348, 404
GluI GCNGC 2 cut(s) 215, 524
HapII CCGG 2 cut(s) 546, 617
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 2 cut(s) 261, 862
HincII GTYRAC 2 cut(s) 64, 390
HindII GTYRAC 2 cut(s) 64, 390
HinfI GANTC 5 cut(s) 127, 562, 652, 821, 855
HpaII CCGG 2 cut(s) 546, 617
HphI GGTGA 1 cut(s) 560
Hpy166II GTNNAC 5 cut(s) 64, 310, 390, 883, 985
Hpy188I TCNGA 6 cut(s) 165, 243, 268, 455, 897, 1004
Hpy188III TCNNGA 5 cut(s) 250, 442, 529, 566, 943
Hpy8I GTNNAC 5 cut(s) 64, 310, 390, 883, 985
Hpy99I CGWCG 1 cut(s) 522
HpyAV CCTTC 2 cut(s) 526, 785
HpyCH4III ACNGT 6 cut(s) 8, 285, 377, 572, 677, 887
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 5 cut(s) 120, 172, 185, 490, 892
HpyF10VI GCNNNNNNNGC 2 cut(s) 178, 418
HpyF3I CTNAG 2 cut(s) 278, 804
HpySE526I ACGT 1 cut(s) 517
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 2 cut(s) 261, 862
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 7 cut(s) 29, 87, 252, 400, 550, 705, 751
LmnI GCTCC 3 cut(s) 144, 368, 531
Lsp1109I GCAGC 2 cut(s) 226, 535
LweI GCATC 3 cut(s) 234, 673, 901
MaeI CTAG 2 cut(s) 348, 404
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 3 cut(s) 135, 324, 715
MalI GATC 7 cut(s) 31, 89, 254, 402, 552, 707, 753
MboI GATC 7 cut(s) 29, 87, 252, 400, 550, 705, 751
MboII GAAGA 5 cut(s) 17, 281, 470, 615, 785
MflI RGATCY 2 cut(s) 400, 705
MluCI AATT 5 cut(s) 37, 158, 343, 599, 899
MmeI TCCRAC 2 cut(s) 390, 723
MnlI CCTC 8 cut(s) 95, 98, 117, 135, 345, 492, 792, 983
MroXI GAANNNNTTC 1 cut(s) 449
MseI TTAA 2 cut(s) 630, 978
MspA1I CMGCKG 1 cut(s) 217
MspI CCGG 2 cut(s) 546, 617
MspR9I CCNGG 1 cut(s) 617
MwoI GCNNNNNNNGC 2 cut(s) 178, 418
NciI CCSGG 1 cut(s) 617
NdeII GATC 7 cut(s) 29, 87, 252, 400, 550, 705, 751
NlaIII CATG 2 cut(s) 261, 862
NlaIV GGNNCC 2 cut(s) 364, 468
NmuCI GTSAC 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 449
PfeI GAWTC 5 cut(s) 127, 562, 652, 821, 855
PflFI GACNNNGTC 1 cut(s) 998
PkrI GCNGC 2 cut(s) 216, 525
PsiI TTATAA 2 cut(s) 201, 696
PspN4I GGNNCC 2 cut(s) 364, 468
PspPI GGNCC 1 cut(s) 906
PsuI RGATCY 2 cut(s) 400, 705
PsyI GACNNNGTC 1 cut(s) 998
RsaI GTAC 4 cut(s) 10, 262, 287, 679
RsaNI GTAC 4 cut(s) 9, 261, 286, 678
SaqAI TTAA 2 cut(s) 630, 978
SatI GCNGC 2 cut(s) 215, 524
Sau3AI GATC 7 cut(s) 29, 87, 252, 400, 550, 705, 751
Sau96I GGNCC 1 cut(s) 906
ScrFI CCNGG 1 cut(s) 617
SfaNI GCATC 3 cut(s) 234, 673, 901
SfcI CTRYAG 1 cut(s) 310
SinI GGWCC 1 cut(s) 906
Sse9I AATT 5 cut(s) 37, 158, 343, 599, 899
SsiI CCGC 3 cut(s) 217, 779, 797
SspI AATATT 2 cut(s) 319, 500
SspMI CTAG 2 cut(s) 348, 404
StyD4I CCNGG 1 cut(s) 615
TaaI ACNGT 6 cut(s) 8, 285, 377, 572, 677, 887
TaiI ACGT 1 cut(s) 520
TaqI TCGA 1 cut(s) 28
TasI AATT 5 cut(s) 37, 158, 343, 599, 899
TatI WGTACW 3 cut(s) 8, 260, 285
TfiI GAWTC 5 cut(s) 127, 562, 652, 821, 855
Tru1I TTAA 2 cut(s) 630, 978
Tru9I TTAA 2 cut(s) 630, 978
TscAI CASTG 2 cut(s) 39, 382
TseFI GTSAC 1 cut(s) 135
TseI GCWGC 2 cut(s) 214, 523
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 7 cut(s) 17, 36, 219, 464, 644, 847, 928
TspGWI ACGGA 1 cut(s) 976
TspRI CASTG 2 cut(s) 39, 382
Tth111I GACNNNGTC 1 cut(s) 998
VpaK11BI GGWCC 1 cut(s) 906
XapI RAATTY 2 cut(s) 37, 899
XmiI GTMKAC 1 cut(s) 309
XmnI GAANNNNTTC 1 cut(s) 449
XspI CTAG 2 cut(s) 348, 404
ZraI GACGTC 1 cut(s) 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.