Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004515

Physical Location & Seq

Genomic Coordinates Reverse (-)

231 .. 2929

Gene Structure 2699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGTTTTACTCGCAGTTTATATTGGCAAAGAAAGGCCCACTTGGGACGATATGGATAGCGGCACATTTGGAGCGCAAGCTTCGCAAGAATCAGGTTGCCGACACCGATATTGGCGTCTCTGTAGATTCTATTCTCTTTCCAGAAGTTCCGATTGCTCTTAGGTTGTCCAGTCATCTTCTGCTTGGTGTAGTGAGGATATATTCTAGAAAGGTGAATTACCTTTTTGATGACTGCAGTGAGGCTTTGCTTAAGATAAAGCAAGCTTTTCGCTCCACCGCAGTCGATTTACCTCCAGAAGAATCTACTGCACCGTATCATTCTATCACTTTGCCTGAGACTTTTGATCTTGATGATTTTGAGCTACCAGATAACGACATTTTTCAGGGTAACTATGTTGATCATCATGTCAGTACAAGGGAACAGATTACTCTCCAAGATGCAATGGAGGGTGTGGTTTACTCAACATCTCAGTTTGGATTGGACGAGCGATTTGGTGATGGTGATACTTCTCAAATTGGTCTAGATTTTGATGAGGACTTGTTCTTAGGCAAGGCTGCAGCTCAAGGGAATGATGGAATTTCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007275 GO:0008150 GO:0008152 GO:0008278 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070601 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

195

Amino Acids

21.69

Weight (kDa)

4.52

Isoelectric Point (pI)

33.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8_N	PF04825	1 - 101	3.3e-40	N terminus of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16270
fragaria_vesca	FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010
malus_domestica	MD00G1016700.v1.1
prunus_persica	Prupe.6G366000_v2.0.a1 Prupe.6G366000_v2.0.a1
pyrus_communis	pycom04g22040 pycom10g04620 pycom12g24300
rosa_chinensis	RchiOBHm_Chr3g0447331
rosa_laevigata	RLG00000026010
rosa_multiflora	Rmu_ssc0000473.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425510
rosa_rugosa	Rorug02G0599600.1 Rorug02G0599700.1 Rorug02G0599800.1 Rorug02G0599900
rosa_samantha	Rh3AG000300 Rh3BG000100 Rh3CG000100 Rh3DG000300 Rh5AG542800 Rh5AG542900
rosa_wichuraiana	Rw3G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	59, 276
AcsI	RAATTY	1 cut(s)	576
AcyI	GRCGYC	1 cut(s)	114
AfaI	GTAC	1 cut(s)	412
AflII	CTTAAG	1 cut(s)	248
AluBI	AGCT	4 cut(s)	79, 263, 361, 560
AluI	AGCT	4 cut(s)	79, 263, 361, 560
Alw26I	GTCTC	2 cut(s)	121, 329
AoxI	GGCC	1 cut(s)	34
ApeKI	GCWGC	2 cut(s)	554, 557
ApoI	RAATTY	1 cut(s)	576
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	223, 506, 512
BbvI	GCAGC	2 cut(s)	541, 569
BccI	CCATC	2 cut(s)	491, 566
BcgI	CGANNNNNNTGC	2 cut(s)	248, 282
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	2 cut(s)	121, 329
BfaI	CTAG	2 cut(s)	204, 521
BfmI	CTRYAG	3 cut(s)	120, 232, 555
BfrI	CTTAAG	1 cut(s)	248
BisI	GCNGC	3 cut(s)	60, 555, 558
BlsI	GCNGC	3 cut(s)	61, 556, 559
BmgT120I	GGNCC	1 cut(s)	35
BmsI	GCATC	1 cut(s)	427
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	546
BsaHI	GRCGYC	1 cut(s)	114
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	1 cut(s)	447
BseMI	GCAATG	1 cut(s)	447
BseMII	CTCAG	2 cut(s)	324, 482
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	2 cut(s)	541, 569
BsgI	GTGCAG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	58
BsmAI	GTCTC	2 cut(s)	121, 329
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	58
BsnI	GGCC	1 cut(s)	36
Bsp143I	GATC	2 cut(s)	343, 397
BspACI	CCGC	2 cut(s)	59, 276
BspANI	GGCC	1 cut(s)	36
BspCNI	CTCAG	2 cut(s)	325, 481
BspMAI	CTGCAG	2 cut(s)	236, 559
BspTI	CTTAAG	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	447
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	2 cut(s)	343, 397
BssNI	GRCGYC	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	312
BstACI	GRCGYC	1 cut(s)	114
BstAFI	CTTAAG	1 cut(s)	248
BstC8I	GCNNGC	2 cut(s)	77, 261
BstDEI	CTNAG	4 cut(s)	158, 333, 468, 544
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	346, 400
BstMAI	GTCTC	2 cut(s)	121, 329
BstMBI	GATC	2 cut(s)	343, 397
BstMWI	GCNNNNNNNGC	1 cut(s)	81
BstSFI	CTRYAG	3 cut(s)	120, 232, 555
BstV1I	GCAGC	2 cut(s)	541, 569
BsuRI	GGCC	1 cut(s)	36
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
Cac8I	GCNNGC	2 cut(s)	77, 261
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	1 cut(s)	35
CseI	GACGC	1 cut(s)	103
Csp6I	GTAC	1 cut(s)	411
CviAII	CATG	1 cut(s)	404
CviJI	RGCY	7 cut(s)	36, 79, 242, 263, 361, 554, 560
CviKI_1	RGCY	7 cut(s)	36, 79, 242, 263, 361, 554, 560
CviQI	GTAC	1 cut(s)	411
DdeI	CTNAG	4 cut(s)	158, 333, 468, 544
DpnI	GATC	2 cut(s)	345, 399
DpnII	GATC	2 cut(s)	343, 397
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	1 cut(s)	407
FaiI	YATR	5 cut(s)	20, 52, 199, 393, 405
FalI	AAGNNNNNCTT	2 cut(s)	24, 56
FaqI	GGGAC	1 cut(s)	58
FatI	CATG	1 cut(s)	403
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	3 cut(s)	60, 555, 558
Fsp4HI	GCNGC	3 cut(s)	60, 555, 558
FspBI	CTAG	2 cut(s)	204, 521
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	3 cut(s)	60, 555, 558
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	36
HgaI	GACGC	1 cut(s)	103
HhaI	GCGC	1 cut(s)	75
Hin1I	GRCGYC	1 cut(s)	114
Hin1II	CATG	1 cut(s)	407
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	2 cut(s)	77, 261
HinfI	GANTC	3 cut(s)	88, 125, 299
HphI	GGTGA	3 cut(s)	223, 506, 512
Hpy166II	GTNNAC	1 cut(s)	457
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	5 cut(s)	140, 204, 293, 347, 521
Hpy8I	GTNNAC	1 cut(s)	457
HpyCH4III	ACNGT	1 cut(s)	312
HpyCH4V	TGCA	4 cut(s)	234, 308, 440, 557
HpyF10VI	GCNNNNNNNGC	1 cut(s)	81
HpyF3I	CTNAG	4 cut(s)	158, 333, 468, 544
Hsp92I	GRCGYC	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	407
HspAI	GCGC	1 cut(s)	73
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	2 cut(s)	343, 397
LmnI	GCTCC	2 cut(s)	70, 275
LpnPI	CCDG	8 cut(s)	77, 153, 181, 306, 345, 368, 378, 567
Lsp1109I	GCAGC	2 cut(s)	541, 569
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	204, 521
MaeIII	GTNAC	1 cut(s)	386
MalI	GATC	2 cut(s)	345, 399
MboI	GATC	2 cut(s)	343, 397
MboII	GAAGA	2 cut(s)	167, 308
MluCI	AATT	3 cut(s)	214, 513, 576
MnlI	CCTC	5 cut(s)	186, 232, 300, 439, 526
MseI	TTAA	1 cut(s)	249
MspCI	CTTAAG	1 cut(s)	248
MwoI	GCNNNNNNNGC	1 cut(s)	81
NdeII	GATC	2 cut(s)	343, 397
NlaIII	CATG	1 cut(s)	407
PfeI	GAWTC	3 cut(s)	88, 125, 299
PkrI	GCNGC	3 cut(s)	61, 556, 559
PspPI	GGNCC	1 cut(s)	35
PstI	CTGCAG	2 cut(s)	236, 559
RsaI	GTAC	1 cut(s)	412
RsaNI	GTAC	1 cut(s)	411
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	3 cut(s)	60, 555, 558
Sau3AI	GATC	2 cut(s)	343, 397
Sau96I	GGNCC	1 cut(s)	35
SetI	ASST	9 cut(s)	81, 96, 164, 213, 222, 265, 292, 363, 562
SfaNI	GCATC	1 cut(s)	427
SfcI	CTRYAG	3 cut(s)	120, 232, 555
SmlI	CTYRAG	2 cut(s)	248, 561
SmoI	CTYRAG	2 cut(s)	248, 561
Sse9I	AATT	3 cut(s)	214, 513, 576
SsiI	CCGC	2 cut(s)	59, 276
SspMI	CTAG	2 cut(s)	204, 521
TaaI	ACNGT	1 cut(s)	312
TaqI	TCGA	1 cut(s)	282
TasI	AATT	3 cut(s)	214, 513, 576
TatI	WGTACW	1 cut(s)	410
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	3 cut(s)	88, 125, 299
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	2 cut(s)	554, 557
TspRI	CASTG	1 cut(s)	241
Vha464I	CTTAAG	1 cut(s)	248
XapI	RAATTY	1 cut(s)	576
XbaI	TCTAGA	2 cut(s)	203, 520
XspI	CTAG	2 cut(s)	204, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.