RchiOBHm_Chr3g0448031

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0017317
Physical Location & Seq
Reverse (-)
450414 .. 451727
1314 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 780 bp
ATGAGTAGTCCGAGTCCCTGGCAGGATGATGAAATGGAAAGTTCGAGCATGGATGAGCAGTGTGATTCCAGGATGTTTAACTGGTGTGAAGTGACGCAAACAGAAGTACATGAGGGACCCTATCCGCCAATATCACAATGCTACGACTTGCTCATCAGATTAACAGTCATCATGCAAGCGGGGGCTTTTATGATAGACACCAATCCACCTCATTCTTTTCTTCATAATTTTCTGAAGGAACCAGGTATATTAGGGGAATCAAAGATTTGGGTCAACTTCACCTCTATAGACAAACAACATCAGAGCCTGAAGGACTTGATGTTTTCGCTTTGTTTCATGGGCGTTGAGCAAAAAGACTGCCGAGATATTGCTGTAGAAATATTAAATAAAGTTCAACCGGCCATCCCACTTCCCCAGTTGGCTATTGATGTGACCGTAAGGCTCATGTGTTCTGAATTGTATGGAAGATTTGACGGTTTTGATGATATGCGCTTGTATCGCTATGCAAAGAAATCATGGGACGACTATAGGGCTGCTACTACCTCCTGCACTGGTTCTCATATGCCTCCATCATCATGTGCTGTTTGTTTGGAGGATTTTGGAGGTGGAGTTGATGCTAAAATGATTGCTCGTTTGCCTTGCTTACATTATTTTCATGCAGCTTGCACTGCCCAGTGGGTTAATATCCGTCGCACGTGCCCCGTGTGCCGAACCCAAATGATGCCACTTGTATGTGATGGAAATGAACCCTTCAATCCTAACCCCATCTGGCCTGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_11 zf-RING_2

Protein Analysis

259

Amino Acids

29.45

Weight (kDa)

5.01

Isoelectric Point (pI)

56.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 192 - 237 8.9e-12 Ring finger domain
zf-C3HC4_2 PF13923 193 - 236 4.2e-06 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 193 - 236 8e-06 Zinc finger, C3HC4 type (RING finger)
zf-RING_11 PF17123 193 - 222 8.3e-06 RING-like zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017317)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g00591 FvH4_6g00620
rosa_chinensis RchiOBHm_Chr3g0447991 RchiOBHm_Chr3g0448031
rosa_laevigata RLG00000025954
rosa_multiflora Rmu_sc0005969.1_g000012 Rmu_sc0005969.1_g000016
rosa_roxburghii Rroxscaffold_6G00426400
rosa_samantha Rh3AG007300 Rh3CG007100 Rh3DG007500
rosa_wichuraiana Rw0G020030 Rw3G000570

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 125, 179
AcoI YGGCCR 1 cut(s) 399
AcuI CTGAAG 2 cut(s) 254, 329
AcvI CACGTG 1 cut(s) 696
AfaI GTAC 1 cut(s) 108
AgsI TTSAA 2 cut(s) 395, 754
AjnI CCWGG 3 cut(s) 17, 68, 241
AluBI AGCT 1 cut(s) 662
AluI AGCT 1 cut(s) 662
AlwNI CAGNNNCTG 1 cut(s) 307
AoxI GGCC 2 cut(s) 399, 770
ApeKI GCWGC 2 cut(s) 533, 659
AspLEI GCGC 1 cut(s) 492
AspS9I GGNCC 1 cut(s) 116
AsuHPI GGTGA 1 cut(s) 271
AvaII GGWCC 1 cut(s) 116
BaeGI GKGCMC 1 cut(s) 701
BbrPI CACGTG 1 cut(s) 696
BbvI GCAGC 2 cut(s) 520, 671
BccI CCATC 4 cut(s) 410, 577, 731, 773
BciT130I CCWGG 3 cut(s) 19, 70, 243
BfmI CTRYAG 3 cut(s) 285, 372, 526
BisI GCNGC 2 cut(s) 534, 660
BlsI GCNGC 2 cut(s) 535, 661
Bme1390I CCNGG 3 cut(s) 19, 70, 243
Bme18I GGWCC 1 cut(s) 116
BmgT120I GGNCC 1 cut(s) 116
BmiI GGNNCC 3 cut(s) 117, 118, 240
BmrFI CCNGG 3 cut(s) 19, 70, 243
BmrI ACTGGG 2 cut(s) 409, 667
BmsI GCATC 2 cut(s) 604, 711
BmuI ACTGGG 2 cut(s) 409, 667
BsaAI YACGTR 1 cut(s) 696
BsaJI CCNNGG 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 594, 624
Bse118I RCCGGY 1 cut(s) 397
Bse1I ACTGG 4 cut(s) 86, 415, 556, 673
BseBI CCWGG 3 cut(s) 19, 70, 243
BseDI CCNNGG 1 cut(s) 17
BseGI GGATG 4 cut(s) 31, 58, 78, 402
BseNI ACTGG 4 cut(s) 86, 415, 556, 673
BseSI GKGCMC 1 cut(s) 701
BseXI GCAGC 2 cut(s) 520, 671
BsgI GTGCAG 1 cut(s) 532
BshFI GGCC 2 cut(s) 401, 772
BsiSI CCGG 1 cut(s) 398
BslFI GGGAC 2 cut(s) 129, 533
BsmFI GGGAC 2 cut(s) 129, 533
BsnI GGCC 2 cut(s) 401, 772
Bsp1286I GDGCHC 1 cut(s) 701
BspACI CCGC 2 cut(s) 125, 179
BspANI GGCC 2 cut(s) 401, 772
BspLI GGNNCC 3 cut(s) 117, 118, 240
BsrFI RCCGGY 1 cut(s) 397
BsrI ACTGG 4 cut(s) 86, 415, 556, 673
BssAI RCCGGY 1 cut(s) 397
BssECI CCNNGG 1 cut(s) 17
Bst2UI CCWGG 3 cut(s) 19, 70, 243
Bst4CI ACNGT 3 cut(s) 166, 436, 476
BstBAI YACGTR 1 cut(s) 696
BstC8I GCNNGC 2 cut(s) 177, 664
BstF5I GGATG 4 cut(s) 31, 58, 78, 402
BstHHI GCGC 1 cut(s) 492
BstMWI GCNNNNNNNGC 3 cut(s) 498, 668, 705
BstNI CCWGG 3 cut(s) 19, 70, 243
BstSCI CCNGG 3 cut(s) 17, 68, 241
BstSFI CTRYAG 3 cut(s) 285, 372, 526
BstSLI GKGCMC 1 cut(s) 701
BstV1I GCAGC 2 cut(s) 520, 671
BsuRI GGCC 2 cut(s) 401, 772
BtsCI GGATG 4 cut(s) 31, 58, 78, 402
BtsI GCAGTG 2 cut(s) 65, 666
BtsIMutI CAGTG 4 cut(s) 65, 549, 666, 680
Cac8I GCNNGC 2 cut(s) 177, 664
CaiI CAGNNNCTG 1 cut(s) 307
CfoI GCGC 1 cut(s) 492
Cfr10I RCCGGY 1 cut(s) 397
Cfr13I GGNCC 1 cut(s) 116
CseI GACGC 1 cut(s) 103
CsiI ACCWGGT 1 cut(s) 241
Csp6I GTAC 1 cut(s) 107
CviAII CATG 8 cut(s) 49, 110, 172, 337, 445, 516, 576, 656
CviJI RGCY 8 cut(s) 185, 306, 401, 422, 442, 533, 662, 772
CviKI_1 RGCY 8 cut(s) 185, 306, 401, 422, 442, 533, 662, 772
CviQI GTAC 1 cut(s) 107
EaeI YGGCCR 1 cut(s) 399
EciI GGCGGA 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 116
Eco57I CTGAAG 2 cut(s) 254, 329
Eco72I CACGTG 1 cut(s) 696
EcoO109I RGGNCCY 1 cut(s) 116
EcoRII CCWGG 3 cut(s) 17, 68, 241
FaeI CATG 8 cut(s) 52, 113, 175, 340, 448, 519, 579, 659
FaqI GGGAC 2 cut(s) 129, 533
FatI CATG 8 cut(s) 48, 109, 171, 336, 444, 515, 575, 655
FauI CCCGC 1 cut(s) 172
FauNDI CATATG 1 cut(s) 561
Fnu4HI GCNGC 2 cut(s) 534, 660
FokI GGATG 4 cut(s) 38, 65, 85, 389
Fsp4HI GCNGC 2 cut(s) 534, 660
GlaI GCGC 1 cut(s) 491
GluI GCNGC 2 cut(s) 534, 660
HaeIII GGCC 2 cut(s) 401, 772
HapII CCGG 1 cut(s) 398
HgaI GACGC 1 cut(s) 103
HhaI GCGC 1 cut(s) 492
Hin1II CATG 8 cut(s) 52, 113, 175, 340, 448, 519, 579, 659
Hin6I GCGC 1 cut(s) 490
HinP1I GCGC 1 cut(s) 490
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HinfI GANTC 3 cut(s) 13, 65, 257
HpaII CCGG 1 cut(s) 398
HphI GGTGA 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 274
Hpy188I TCNGA 5 cut(s) 12, 158, 234, 303, 454
Hpy8I GTNNAC 1 cut(s) 274
Hpy99I CGWCG 1 cut(s) 693
HpyAV CCTTC 3 cut(s) 229, 304, 760
HpyCH4III ACNGT 3 cut(s) 166, 436, 476
HpyCH4IV ACGT 1 cut(s) 695
HpyCH4V TGCA 5 cut(s) 175, 506, 549, 659, 666
HpyF10VI GCNNNNNNNGC 3 cut(s) 498, 668, 705
HpySE526I ACGT 1 cut(s) 695
Hsp92II CATG 8 cut(s) 52, 113, 175, 340, 448, 519, 579, 659
HspAI GCGC 1 cut(s) 490
KflI GGGWCCC 1 cut(s) 116
Lsp1109I GCAGC 2 cut(s) 520, 671
LweI GCATC 2 cut(s) 604, 711
MabI ACCWGGT 1 cut(s) 241
MaeII ACGT 1 cut(s) 695
MaeIII GTNAC 2 cut(s) 91, 430
MboII GAAGA 2 cut(s) 212, 477
MhlI GDGCHC 1 cut(s) 701
MluCI AATT 2 cut(s) 226, 455
MlyI GAGTC 1 cut(s) 22
MnlI CCTC 7 cut(s) 106, 219, 292, 553, 576, 586, 596
MseI TTAA 4 cut(s) 78, 161, 383, 681
MslI CAYNNNNRTG 2 cut(s) 574, 730
MspI CCGG 1 cut(s) 398
MspR9I CCNGG 3 cut(s) 19, 70, 243
MvaI CCWGG 3 cut(s) 19, 70, 243
MwoI GCNNNNNNNGC 3 cut(s) 498, 668, 705
NdeI CATATG 1 cut(s) 561
NlaIII CATG 8 cut(s) 52, 113, 175, 340, 448, 519, 579, 659
NlaIV GGNNCC 3 cut(s) 117, 118, 240
NmeAIII GCCGAG 1 cut(s) 386
NmuCI GTSAC 2 cut(s) 91, 430
PfeI GAWTC 2 cut(s) 65, 257
PfoI TCCNGGA 1 cut(s) 68
PkrI GCNGC 2 cut(s) 535, 661
PleI GAGTC 1 cut(s) 21
PmaCI CACGTG 1 cut(s) 696
PmlI CACGTG 1 cut(s) 696
PpsI GAGTC 1 cut(s) 21
Ppu21I YACGTR 1 cut(s) 696
PpuMI RGGWCCY 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 116
Psp6I CCWGG 3 cut(s) 17, 68, 241
PspCI CACGTG 1 cut(s) 696
PspGI CCWGG 3 cut(s) 17, 68, 241
PspN4I GGNNCC 3 cut(s) 117, 118, 240
PspPI GGNCC 1 cut(s) 116
PspPPI RGGWCCY 1 cut(s) 116
PstNI CAGNNNCTG 1 cut(s) 307
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 2 cut(s) 574, 730
SaqAI TTAA 4 cut(s) 78, 161, 383, 681
SatI GCNGC 2 cut(s) 534, 660
Sau96I GGNCC 1 cut(s) 116
SchI GAGTC 1 cut(s) 22
ScrFI CCNGG 3 cut(s) 19, 70, 243
SduI GDGCHC 1 cut(s) 701
SetI ASST 7 cut(s) 211, 247, 284, 545, 607, 664, 698
SexAI ACCWGGT 1 cut(s) 241
SfaNI GCATC 2 cut(s) 604, 711
SfcI CTRYAG 3 cut(s) 285, 372, 526
SinI GGWCC 1 cut(s) 116
SmiMI CAYNNNNRTG 2 cut(s) 574, 730
Sse9I AATT 2 cut(s) 226, 455
SsiI CCGC 2 cut(s) 125, 179
SspI AATATT 1 cut(s) 381
StyD4I CCNGG 3 cut(s) 17, 68, 241
TaaI ACNGT 3 cut(s) 166, 436, 476
TaiI ACGT 1 cut(s) 698
TaqI TCGA 1 cut(s) 44
TasI AATT 2 cut(s) 226, 455
TatI WGTACW 1 cut(s) 106
TfiI GAWTC 2 cut(s) 65, 257
Tru1I TTAA 4 cut(s) 78, 161, 383, 681
Tru9I TTAA 4 cut(s) 78, 161, 383, 681
TscAI CASTG 4 cut(s) 65, 556, 673, 680
TseFI GTSAC 2 cut(s) 91, 430
TseI GCWGC 2 cut(s) 533, 659
Tsp45I GTSAC 2 cut(s) 91, 430
TspDTI ATGAA 5 cut(s) 45, 212, 325, 644, 759
TspGWI ACGGA 1 cut(s) 677
TspRI CASTG 4 cut(s) 65, 556, 673, 680
VpaK11BI GGWCC 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.