RchiOBHm_Chr3g0452151

poly ADP-ribose polymerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016239
Physical Location & Seq
Reverse (-)
2923586 .. 2925633
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1383 bp
ATGGAGCAGATCCGGATTGACACCGATGATTATCACCAGGAGGAGGAGGAGGAGGTTCCTATGATCTTGGAGGATCAAGATTCCGGGTCGGGTCGCTCCGAATCGAATCCTTCCGGTTCCGATTCCGATTCCGACTCCGGTGAGCAGAACGATGAAGATTCGGAGTCCGATTGCGAGAGCGAAACCGTTGAATCGAATTCTACTTATCAATTTGGGGCTTTCACCGGAAATGGGATGATGTTCAGAGTGAATGATGTGAGCGAGGAGTACGAGGATATTGTCACGAGCTTTGCTGTGGGTATGGGACCGGCGGCAGGAGTTGCGAAGGTTGTGGCGGCGCACAAGAAATCGATTTCTGGGCTGACCGACCGGGCCAGGTTCGAAACGTTTCGGGTTTTTTCGGAGGCGGTGGGGAAGAAATGCGACGGAAACGCGAACATTAAGTATGCTTGGTACAGCGGATCGAGGGATGAGATTGTGGAGATAGTGGATCGTGGATTTAGTAGTCGTAATGCGGATGAGTGTGGCCGGATCCAGTTGATTCCGGTTAAGTTTGCTTTGGATGCGGCGTTGGGCTTGGAGGAGGTTGGTGATGATGGGCTGAGGCATATGCTGCTGTGCCGGGTTATATTGGGGAAGATGGAAGTGGTGCCTAGTGGTTCTCAACAAGGTGTTCCTGGCTCGAATGAGTTTGATTCCGGTGTGGATAGTGCTGTGAATCCGAGGAAGTATTTTGTGTGGAGTGCATTCATGAACTCGCATATTCTTCCTGCTTATGTTGTGAGCTTCAAGGGTCCTGCTAACTTGAAGGCTTATGTGAAGACTACTGCTACTACTTCTCAGGCGGCGAGTGTTGCTAGTGCTATTACTCAGGGGAGTGCTCGATACAAAGGGCCTGGACGTGTTACTGCTGCTGCTCTGGTGGCTGGGCTGACGAGGTTCTTGACTCCCCAAGAAATGAAGATTATTGTCAGATTGCTGGACGAATTCAAGGCAAAGAAGATTACAGGAGAGGAGCTGAAGCGAAAAGCGAGACTCGTAGCCGGTGACAAGTTGATTTCAGCCTTGAAATTGATGTCATCGACTGTTAATGGGAGCGGTACTGTTGGTGGTGGAATGCAGCTGGAGAATGGATCAGTACGAGATATCTATCTCCCTGGTCTGATGACCGTGCTTGCAGGGTTGCTGCCTGCTCCGAAGTCGGCCATGCTTAGTAAAAGCCTCGGCGATTTCAGGGCTAAGAAGATAACTCGACGTCAGCTGGCTCGATGTGTGAGAATCATTGTTGGCAATGACAGTGTGTTGGTTTCAGCAATCAAATCTTACAGAATCAGGAAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGACAAGTCACCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PARP RST

Protein Analysis

460

Amino Acids

49.83

Weight (kDa)

5.68

Isoelectric Point (pI)

41.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RST PF12174 305 - 354 4.8e-08 RCD1-SRO-TAF4 (RST) plant domain
RST PF12174 385 - 443 1.3e-09 RCD1-SRO-TAF4 (RST) plant domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016239)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g15180 FvH4_1g15250 FvH4_6g03610 FvH4_6g03610
rosa_chinensis RchiOBHm_Chr3g0452151
rosa_laevigata RLG00000025624
rosa_multiflora Rmu_sc0039908.1_g000001
rosa_roxburghii Rroxscaffold_164G00436040 Rroxscaffold_6G00429270
rosa_rugosa Rorug02G0638600
rosa_samantha Rh3AG040600 Rh3BG042100 Rh3CG040500 Rh3DG041400
rosa_wichuraiana Rw3G003090

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1258
AccB1I GGYRCC 1 cut(s) 649
AccBSI CCGCTC 1 cut(s) 1098
AccII CGCG 1 cut(s) 434
AccIII TCCGGA 1 cut(s) 12
AciI CCGC 8 cut(s) 311, 335, 407, 459, 515, 566, 845, 1098
AclI AACGTT 1 cut(s) 386
AclWI GGATC 7 cut(s) 4, 81, 469, 498, 526, 539, 1141
AcoI YGGCCR 2 cut(s) 526, 1203
AcsI RAATTY 2 cut(s) 196, 986
AcuI CTGAAG 1 cut(s) 1040
AcyI GRCGYC 1 cut(s) 1255
AfaI GTAC 4 cut(s) 269, 455, 1102, 1140
AfiI CCNNNNNNNGG 3 cut(s) 43, 231, 314
AflIII ACRYGT 1 cut(s) 901
AgsI TTSAA 5 cut(s) 191, 790, 808, 991, 1069
AjiI CACGTC 1 cut(s) 902
AjnI CCWGG 5 cut(s) 36, 374, 676, 895, 1156
AleI CACNNNNGTG 1 cut(s) 1378
AluBI AGCT 5 cut(s) 288, 786, 1018, 1123, 1261
AluI AGCT 5 cut(s) 288, 786, 1018, 1123, 1261
Alw21I GWGCWC 1 cut(s) 883
Alw26I GTCTC 1 cut(s) 1027
AlwI GGATC 7 cut(s) 4, 81, 469, 498, 526, 539, 1141
Aor13HI TCCGGA 1 cut(s) 12
AoxI GGCC 4 cut(s) 372, 526, 893, 1203
ApoI RAATTY 2 cut(s) 196, 986
Asp700I GAANNNNTTC 1 cut(s) 387
AspLEI GCGC 1 cut(s) 340
AspS9I GGNCC 4 cut(s) 305, 372, 794, 893
AsuC2I CCSGG 3 cut(s) 85, 371, 623
AsuHPI GGTGA 6 cut(s) 26, 152, 214, 602, 1058, 1365
AsuII TTCGAA 1 cut(s) 381
AvaII GGWCC 2 cut(s) 305, 794
BamHI GGATCC 1 cut(s) 531
BanI GGYRCC 1 cut(s) 649
BauI CACGAG 1 cut(s) 283
BbsI GAAGAC 1 cut(s) 827
Bbv12I GWGCWC 1 cut(s) 883
BbvCI CCTCAGC 1 cut(s) 602
BccI CCATC 2 cut(s) 590, 634
BciT130I CCWGG 5 cut(s) 38, 376, 678, 897, 1158
BcnI CCSGG 3 cut(s) 85, 371, 623
BcoDI GTCTC 1 cut(s) 1027
BfaI CTAG 2 cut(s) 654, 858
Bme1390I CCNGG 8 cut(s) 38, 85, 371, 376, 623, 678, 897, 1158
Bme18I GGWCC 2 cut(s) 305, 794
BmgBI CACGTC 1 cut(s) 902
BmgT120I GGNCC 4 cut(s) 305, 372, 794, 893
BmiI GGNNCC 6 cut(s) 57, 118, 306, 533, 651, 795
BmrFI CCNGG 8 cut(s) 38, 85, 371, 376, 623, 678, 897, 1158
BmsI GCATC 1 cut(s) 553
BpiI GAAGAC 1 cut(s) 827
BpmI CTGGAG 1 cut(s) 1145
Bpu10I CCTNAGC 1 cut(s) 602
Bpu14I TTCGAA 1 cut(s) 381
BpuMI CCSGG 3 cut(s) 85, 371, 623
Bsa29I ATCGAT 1 cut(s) 350
BsaBI GATNNNNATC 2 cut(s) 30, 1149
BsaHI GRCGYC 1 cut(s) 1255
BsaJI CCNNGG 3 cut(s) 722, 1156, 1222
BsaWI WCCGGW 6 cut(s) 12, 113, 137, 224, 544, 698
Bsc4I CCNNNNNNNGG 3 cut(s) 43, 231, 314
Bse118I RCCGGY 2 cut(s) 307, 1043
Bse1I ACTGG 1 cut(s) 535
Bse3DI GCAATG 1 cut(s) 1297
Bse8I GATNNNNATC 2 cut(s) 30, 1149
BseAI TCCGGA 1 cut(s) 12
BseBI CCWGG 5 cut(s) 38, 376, 678, 897, 1158
BseCI ATCGAT 1 cut(s) 350
BseDI CCNNGG 3 cut(s) 722, 1156, 1222
BseGI GGATG 4 cut(s) 240, 475, 523, 568
BseJI GATNNNNATC 2 cut(s) 30, 1149
BseLI CCNNNNNNNGG 3 cut(s) 43, 231, 314
BseMI GCAATG 1 cut(s) 1297
BseMII CTCAG 3 cut(s) 593, 854, 884
BseNI ACTGG 1 cut(s) 535
BseRI GAGGAG 7 cut(s) 56, 59, 62, 65, 278, 596, 1028
BseYI CCCAGC 1 cut(s) 926
Bsh1236I CGCG 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 370
BshFI GGCC 4 cut(s) 374, 528, 895, 1205
BshNI GGYRCC 1 cut(s) 649
BshVI ATCGAT 1 cut(s) 350
BsiEI CGRYCG 1 cut(s) 370
BsiHKAI GWGCWC 1 cut(s) 883
BslFI GGGAC 1 cut(s) 318
BslI CCNNNNNNNGG 3 cut(s) 43, 231, 314
BsmAI GTCTC 1 cut(s) 1027
BsmFI GGGAC 1 cut(s) 318
BsmI GAATGC 2 cut(s) 746, 1122
BsnI GGCC 4 cut(s) 374, 528, 895, 1205
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 883
Bsp13I TCCGGA 1 cut(s) 12
Bsp143I GATC 7 cut(s) 9, 63, 73, 461, 490, 531, 1133
BspACI CCGC 8 cut(s) 311, 335, 407, 459, 515, 566, 845, 1098
BspANI GGCC 4 cut(s) 374, 528, 895, 1205
BspCNI CTCAG 3 cut(s) 594, 853, 883
BspDI ATCGAT 1 cut(s) 350
BspEI TCCGGA 1 cut(s) 12
BspFNI CGCG 1 cut(s) 434
BspHI TCATGA 1 cut(s) 750
BspLI GGNNCC 6 cut(s) 57, 118, 306, 533, 651, 795
BspPI GGATC 7 cut(s) 4, 81, 469, 498, 526, 539, 1141
BspT104I TTCGAA 1 cut(s) 381
BspT107I GGYRCC 1 cut(s) 649
BsrBI CCGCTC 1 cut(s) 1098
BsrDI GCAATG 1 cut(s) 1297
BsrFI RCCGGY 2 cut(s) 307, 1043
BsrI ACTGG 1 cut(s) 535
BssAI RCCGGY 2 cut(s) 307, 1043
BssECI CCNNGG 3 cut(s) 722, 1156, 1222
BssMI GATC 7 cut(s) 9, 63, 73, 461, 490, 531, 1133
BssNI GRCGYC 1 cut(s) 1255
BssSI CACGAG 1 cut(s) 283
Bst2BI CACGAG 1 cut(s) 283
Bst2UI CCWGG 5 cut(s) 38, 376, 678, 897, 1158
Bst4CI ACNGT 5 cut(s) 187, 1087, 1105, 1171, 1298
BstACI GRCGYC 1 cut(s) 1255
BstAPI GCANNNNNTGC 2 cut(s) 320, 613
BstBI TTCGAA 1 cut(s) 381
BstC8I GCNNGC 3 cut(s) 1176, 1191, 1263
BstDEI CTNAG 5 cut(s) 602, 840, 870, 1211, 1239
BstF5I GGATG 4 cut(s) 240, 475, 523, 568
BstFNI CGCG 1 cut(s) 434
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 7 cut(s) 12, 66, 76, 464, 493, 534, 1136
BstMAI GTCTC 1 cut(s) 1027
BstMBI GATC 7 cut(s) 9, 63, 73, 461, 490, 531, 1133
BstMCI CGRYCG 1 cut(s) 370
BstNI CCWGG 5 cut(s) 38, 376, 678, 897, 1158
BstSCI CCNGG 8 cut(s) 36, 83, 369, 374, 621, 676, 895, 1156
BstUI CGCG 1 cut(s) 434
BstV2I GAAGAC 1 cut(s) 827
BstX2I RGATCY 2 cut(s) 9, 531
BstYI RGATCY 2 cut(s) 9, 531
Bsu15I ATCGAT 1 cut(s) 350
BsuRI GGCC 4 cut(s) 374, 528, 895, 1205
BsuTUI ATCGAT 1 cut(s) 350
BtrI CACGTC 1 cut(s) 902
BtsCI GGATG 4 cut(s) 240, 475, 523, 568
BtsIMutI CAGTG 1 cut(s) 1303
Cac8I GCNNGC 3 cut(s) 1176, 1191, 1263
CciI TCATGA 1 cut(s) 750
CfoI GCGC 1 cut(s) 340
Cfr10I RCCGGY 2 cut(s) 307, 1043
Cfr13I GGNCC 4 cut(s) 305, 372, 794, 893
ClaI ATCGAT 1 cut(s) 350
Csp6I GTAC 4 cut(s) 268, 454, 1101, 1139
CviAII CATG 2 cut(s) 751, 1207
CviQI GTAC 4 cut(s) 268, 454, 1101, 1139
DdeI CTNAG 5 cut(s) 602, 840, 870, 1211, 1239
DpnI GATC 7 cut(s) 11, 65, 75, 463, 492, 533, 1135
DpnII GATC 7 cut(s) 9, 63, 73, 461, 490, 531, 1133
EaeI YGGCCR 2 cut(s) 526, 1203
Eco32I GATATC 1 cut(s) 1147
Eco47I GGWCC 2 cut(s) 305, 794
Eco57I CTGAAG 1 cut(s) 1040
EcoO109I RGGNCCY 2 cut(s) 794, 893
EcoRI GAATTC 2 cut(s) 196, 986
EcoRII CCWGG 5 cut(s) 36, 374, 676, 895, 1156
EcoRV GATATC 1 cut(s) 1147
FaeI CATG 2 cut(s) 754, 1210
FaqI GGGAC 1 cut(s) 318
FatI CATG 2 cut(s) 750, 1206
FauNDI CATATG 1 cut(s) 609
FokI GGATG 4 cut(s) 247, 482, 530, 575
FspBI CTAG 2 cut(s) 654, 858
GlaI GCGC 1 cut(s) 339
GsaI CCCAGC 1 cut(s) 930
GsuI CTGGAG 1 cut(s) 1145
HaeIII GGCC 4 cut(s) 374, 528, 895, 1205
HhaI GCGC 1 cut(s) 340
Hin1I GRCGYC 1 cut(s) 1255
Hin1II CATG 2 cut(s) 754, 1210
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
HphI GGTGA 6 cut(s) 26, 152, 214, 602, 1058, 1365
Hpy188III TCNNGA 6 cut(s) 13, 77, 283, 751, 943, 1333
Hpy99I CGWCG 2 cut(s) 428, 1257
HpyAV CCTTC 3 cut(s) 120, 319, 802
HpyCH4III ACNGT 5 cut(s) 187, 1087, 1105, 1171, 1298
HpyCH4IV ACGT 3 cut(s) 386, 901, 1255
HpyCH4V TGCA 3 cut(s) 746, 1120, 1178
HpyF3I CTNAG 5 cut(s) 602, 840, 870, 1211, 1239
HpySE526I ACGT 3 cut(s) 386, 901, 1255
Hsp92I GRCGYC 1 cut(s) 1255
Hsp92II CATG 2 cut(s) 754, 1210
HspAI GCGC 1 cut(s) 338
Kpn2I TCCGGA 1 cut(s) 12
Kzo9I GATC 7 cut(s) 9, 63, 73, 461, 490, 531, 1133
LmnI GCTCC 5 cut(s) 4, 101, 1015, 1095, 1198
LweI GCATC 1 cut(s) 553
MaeI CTAG 2 cut(s) 654, 858
MaeII ACGT 3 cut(s) 386, 901, 1255
MaeIII GTNAC 4 cut(s) 280, 904, 1046, 1371
MalI GATC 7 cut(s) 11, 65, 75, 463, 492, 533, 1135
MbiI CCGCTC 1 cut(s) 1098
MboI GATC 7 cut(s) 9, 63, 73, 461, 490, 531, 1133
MboII GAAGA 8 cut(s) 167, 427, 649, 758, 832, 973, 1012, 1255
MflI RGATCY 2 cut(s) 9, 531
MhlI GDGCHC 1 cut(s) 883
MluCI AATT 4 cut(s) 196, 209, 986, 1070
MlyI GAGTC 4 cut(s) 128, 173, 940, 1029
MmeI TCCRAC 1 cut(s) 156
MroI TCCGGA 1 cut(s) 12
MroXI GAANNNNTTC 1 cut(s) 387
MseI TTAA 3 cut(s) 441, 549, 1089
MslI CAYNNNNRTG 1 cut(s) 1378
MspA1I CMGCKG 3 cut(s) 459, 1123, 1261
MspR9I CCNGG 8 cut(s) 38, 85, 371, 376, 623, 678, 897, 1158
Mva1269I GAATGC 2 cut(s) 746, 1122
MvaI CCWGG 5 cut(s) 38, 376, 678, 897, 1158
MvnI CGCG 1 cut(s) 434
NciI CCSGG 3 cut(s) 85, 371, 623
NdeI CATATG 1 cut(s) 609
NdeII GATC 7 cut(s) 9, 63, 73, 461, 490, 531, 1133
NlaIII CATG 2 cut(s) 754, 1210
NlaIV GGNNCC 6 cut(s) 57, 118, 306, 533, 651, 795
NmeAIII GCCGAG 1 cut(s) 1203
NmuCI GTSAC 3 cut(s) 280, 1046, 1371
NspV TTCGAA 1 cut(s) 381
OliI CACNNNNGTG 1 cut(s) 1378
PagI TCATGA 1 cut(s) 750
PctI GAATGC 2 cut(s) 746, 1122
PdmI GAANNNNTTC 1 cut(s) 387
PleI GAGTC 4 cut(s) 128, 172, 940, 1029
PpsI GAGTC 4 cut(s) 128, 172, 940, 1029
PpuMI RGGWCCY 1 cut(s) 794
Psp1406I AACGTT 1 cut(s) 386
Psp5II RGGWCCY 1 cut(s) 794
Psp6I CCWGG 5 cut(s) 36, 374, 676, 895, 1156
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 5 cut(s) 36, 374, 676, 895, 1156
PspN4I GGNNCC 6 cut(s) 57, 118, 306, 533, 651, 795
PspPI GGNCC 4 cut(s) 305, 372, 794, 893
PspPPI RGGWCCY 1 cut(s) 794
PsuI RGATCY 2 cut(s) 9, 531
PvuII CAGCTG 2 cut(s) 1123, 1261
RsaI GTAC 4 cut(s) 269, 455, 1102, 1140
RsaNI GTAC 4 cut(s) 268, 454, 1101, 1139
RseI CAYNNNNRTG 1 cut(s) 1378
SaqAI TTAA 3 cut(s) 441, 549, 1089
Sau3AI GATC 7 cut(s) 9, 63, 73, 461, 490, 531, 1133
Sau96I GGNCC 4 cut(s) 305, 372, 794, 893
SchI GAGTC 4 cut(s) 128, 173, 940, 1029
ScrFI CCNGG 8 cut(s) 38, 85, 371, 376, 623, 678, 897, 1158
SduI GDGCHC 1 cut(s) 883
SfaNI GCATC 1 cut(s) 553
SfuI TTCGAA 1 cut(s) 381
SinI GGWCC 2 cut(s) 305, 794
SmiMI CAYNNNNRTG 1 cut(s) 1378
Sse9I AATT 4 cut(s) 196, 209, 986, 1070
SsiI CCGC 8 cut(s) 311, 335, 407, 459, 515, 566, 845, 1098
SspMI CTAG 2 cut(s) 654, 858
StyD4I CCNGG 8 cut(s) 36, 83, 369, 374, 621, 676, 895, 1156
TaaI ACNGT 5 cut(s) 187, 1087, 1105, 1171, 1298
TaiI ACGT 3 cut(s) 389, 904, 1258
TaqII GACCGA 1 cut(s) 380
TasI AATT 4 cut(s) 196, 209, 986, 1070
TauI GCSGC 4 cut(s) 314, 338, 569, 848
Tru1I TTAA 3 cut(s) 441, 549, 1089
Tru9I TTAA 3 cut(s) 441, 549, 1089
TscAI CASTG 1 cut(s) 1303
TseFI GTSAC 3 cut(s) 280, 1046, 1371
Tsp45I GTSAC 3 cut(s) 280, 1046, 1371
TspDTI ATGAA 4 cut(s) 168, 739, 767, 974
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 1 cut(s) 1303
VpaK11BI GGWCC 2 cut(s) 305, 794
XapI RAATTY 2 cut(s) 196, 986
XmnI GAANNNNTTC 1 cut(s) 387
XspI CTAG 2 cut(s) 654, 858
ZraI GACGTC 1 cut(s) 1256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.