RchiOBHm_Chr3g0457001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011316
Physical Location & Seq
Forward (+)
6276605 .. 6277943
1339 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 738 bp
ATGGGTTCTTCTTCGGTGATAAGCCCAGAAGATGTATTGGAGTCTCTAATGAACGACGGCACCATTGACTCTCTCAGATTGAAGATCATCAACCAGCTCAAAGCCAATGAAGAGCTGAAGAGCACGACAATCAAAATGGCGGAGCAAAGCCGAGTTCTCAACACTCCCGGGGCCGAGAAGCAGACGAAGAGAGAGCTGTTTGATGCTCTGAGGCAGGAGCTTGAGACCCAAGTGCTGGAGAAGGCTTCCAAGTCTGTTTGGGAGTTGATTTTGGATAACAATGGAATGGGAAAGGAAATCAATCAAACTGTTGAAAGGGTGTTCTGCAAGCTCAGCGGCCGCGAACCGCCCCTGTTTCCTCCTCAACAAGATGCCGATGCCGATGCCGATGTCAATGTTAAGGGCAATACCAATGCCAATGCTAATGTTAAGGATAATGCCAATGCCAATACTAATGCTAATGCCAAGGGAAAGGGGAAGGCGAATGGGAAAGGAAAAGTGAAGGGGAAGGGGAAGGGGAAAGAGAAGGCAAAGGAAGCGGCGAGTGAACAAGTTGAAGCCAAGCCTGAGGAGGAGAAGTCGAATTCAAAGAAGAGGAGTTTCAGTGAAGTGAATGCACAAGGAGAAGGAGATGGAGAACCTCCTGTAAGGTTGGACCTAAAAGTTGAAGCCAAGCCTGAAGTTGAAGCCATGCCTCAAGAAGGTCCTGTAGCTATGGCGGAAGACCCTCAAGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

245

Amino Acids

26.51

Weight (kDa)

5.22

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011316)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G56420
fragaria_vesca FvH4_6g07400
malus_domestica MD04G1193400.v1.1
prunus_persica Prupe.6G313500_v2.0.a1
pyrus_communis pycom04g17140
rosa_chinensis RchiOBHm_Chr3g0457001 RchiOBHm_Chr5g0001621
rosa_laevigata RLG00000025253 RLG00000030950
rosa_roxburghii Rroxscaffold_6G00422280
rosa_rugosa Rorug03G0018200 Rorug03G0018300 Rorug07G0327900
rosa_samantha Rh3AG078100 Rh3BG080000 Rh3CG079900 Rh7BG453900 Rh7CG499300 Rh7DG467400
rosa_wichuraiana Rw3G006700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 59
AccB7I CCANNNNNTGG 1 cut(s) 235
AccII CGCG 1 cut(s) 342
AciI CCGC 6 cut(s) 140, 336, 340, 347, 539, 719
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 583
AcuI CTGAAG 2 cut(s) 137, 699
AfiI CCNNNNNNNGG 2 cut(s) 235, 701
AgsI TTSAA 6 cut(s) 82, 314, 557, 588, 668, 686
AluBI AGCT 6 cut(s) 97, 115, 196, 220, 331, 713
AluI AGCT 6 cut(s) 97, 115, 196, 220, 331, 713
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 48, 218
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 171, 337
ApoI RAATTY 1 cut(s) 583
AspS9I GGNCC 3 cut(s) 171, 655, 704
AsuC2I CCSGG 2 cut(s) 168, 169
AsuHPI GGTGA 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 2 cut(s) 655, 704
AxyI CCTNAGG 1 cut(s) 567
BanI GGYRCC 1 cut(s) 59
BbsI GAAGAC 1 cut(s) 729
Bbv12I GWGCWC 1 cut(s) 125
BccI CCATC 1 cut(s) 626
BceAI ACGGC 1 cut(s) 73
BcgI CGANNNNNNTGC 2 cut(s) 365, 399
BcnI CCSGG 2 cut(s) 168, 169
BcoDI GTCTC 2 cut(s) 48, 218
BfmI CTRYAG 1 cut(s) 708
BisI GCNGC 3 cut(s) 337, 340, 540
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 3 cut(s) 338, 341, 541
Bme1390I CCNGG 2 cut(s) 168, 169
Bme18I GGWCC 2 cut(s) 655, 704
BmeT110I CYCGRG 1 cut(s) 167
BmgT120I GGNCC 3 cut(s) 171, 655, 704
BmiI GGNNCC 2 cut(s) 61, 172
BmrFI CCNGG 2 cut(s) 168, 169
BmsI GCATC 4 cut(s) 193, 361, 367, 373
BpiI GAAGAC 1 cut(s) 729
BpmI CTGGAG 1 cut(s) 257
Bpu1102I GCTNAGC 1 cut(s) 332
BpuEI CTTGAG 3 cut(s) 242, 681, 714
BpuMI CCSGG 2 cut(s) 168, 169
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 167, 168, 465
BsaXI ACNNNNNCTCC 4 cut(s) 563, 589, 593, 619
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 701
Bse21I CCTNAGG 1 cut(s) 567
BseDI CCNNGG 3 cut(s) 167, 168, 465
BseLI CCNNNNNNNGG 2 cut(s) 235, 701
BseMII CTCAG 4 cut(s) 88, 200, 346, 558
BseRI GAGGAG 4 cut(s) 351, 584, 587, 610
BseX3I CGGCCG 1 cut(s) 337
Bsh1236I CGCG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 340
BshFI GGCC 2 cut(s) 173, 339
BshNI GGYRCC 1 cut(s) 59
BsiEI CGRYCG 1 cut(s) 340
BsiHKAI GWGCWC 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 235, 701
BsmAI GTCTC 2 cut(s) 48, 218
BsmI GAATGC 1 cut(s) 619
BsnI GGCC 2 cut(s) 173, 339
Bso31I GGTCTC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 125
Bsp143I GATC 1 cut(s) 84
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 6 cut(s) 140, 336, 340, 347, 539, 719
BspANI GGCC 2 cut(s) 173, 339
BspCNI CTCAG 4 cut(s) 87, 201, 345, 559
BspFNI CGCG 1 cut(s) 342
BspLI GGNNCC 2 cut(s) 61, 172
BspQI GCTCTTC 2 cut(s) 105, 113
BspT107I GGYRCC 1 cut(s) 59
BspTNI GGTCTC 1 cut(s) 218
BssECI CCNNGG 3 cut(s) 167, 168, 465
BssMI GATC 1 cut(s) 84
BssT1I CCWWGG 1 cut(s) 465
Bst4CI ACNGT 1 cut(s) 310
Bst6I CTCTTC 4 cut(s) 105, 113, 182, 587
BstC8I GCNNGC 1 cut(s) 329
BstDEI CTNAG 4 cut(s) 74, 209, 332, 567
BstENI CCTNNNNNAGG 1 cut(s) 699
BstFNI CGCG 1 cut(s) 342
BstKTI GATC 1 cut(s) 87
BstMAI GTCTC 2 cut(s) 48, 218
BstMBI GATC 1 cut(s) 84
BstMCI CGRYCG 1 cut(s) 340
BstMWI GCNNNNNNNGC 2 cut(s) 333, 536
BstSCI CCNGG 2 cut(s) 166, 167
BstSFI CTRYAG 1 cut(s) 708
BstUI CGCG 1 cut(s) 342
BstV2I GAAGAC 1 cut(s) 729
BstZI CGGCCG 1 cut(s) 337
Bsu36I CCTNAGG 1 cut(s) 567
BsuRI GGCC 2 cut(s) 173, 339
BtsIMutI CAGTG 1 cut(s) 610
Cac8I GCNNGC 1 cut(s) 329
CciNI GCGGCCGC 1 cut(s) 337
Cfr13I GGNCC 3 cut(s) 171, 655, 704
Cfr9I CCCGGG 1 cut(s) 167
CviAII CATG 1 cut(s) 691
DdeI CTNAG 4 cut(s) 74, 209, 332, 567
DpnI GATC 1 cut(s) 86
DpnII GATC 1 cut(s) 84
EaeI YGGCCR 1 cut(s) 337
EagI CGGCCG 1 cut(s) 337
Eam1104I CTCTTC 4 cut(s) 105, 113, 182, 587
EarI CTCTTC 4 cut(s) 105, 113, 182, 587
EciI GGCGGA 2 cut(s) 155, 734
EclXI CGGCCG 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 218
Eco47I GGWCC 2 cut(s) 655, 704
Eco52I CGGCCG 1 cut(s) 337
Eco57I CTGAAG 2 cut(s) 137, 699
Eco81I CCTNAGG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 167
EcoNI CCTNNNNNAGG 1 cut(s) 699
EcoO109I RGGNCCY 1 cut(s) 704
EcoRI GAATTC 1 cut(s) 583
EcoT14I CCWWGG 1 cut(s) 465
ErhI CCWWGG 1 cut(s) 465
FaeI CATG 1 cut(s) 694
FaiI YATR 2 cut(s) 692, 716
FatI CATG 1 cut(s) 690
Fnu4HI GCNGC 3 cut(s) 337, 340, 540
Fsp4HI GCNGC 3 cut(s) 337, 340, 540
GluI GCNGC 3 cut(s) 337, 340, 540
GsuI CTGGAG 1 cut(s) 257
HaeIII GGCC 2 cut(s) 173, 339
HapII CCGG 1 cut(s) 168
Hin1II CATG 1 cut(s) 694
HinfI GANTC 2 cut(s) 41, 68
HpaII CCGG 1 cut(s) 168
HphI GGTGA 1 cut(s) 28
Hpy166II GTNNAC 1 cut(s) 548
Hpy188I TCNGA 2 cut(s) 77, 210
Hpy188III TCNNGA 1 cut(s) 698
Hpy8I GTNNAC 1 cut(s) 548
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 8 cut(s) 235, 472, 496, 502, 508, 520, 620, 695
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 2 cut(s) 327, 617
HpyF10VI GCNNNNNNNGC 2 cut(s) 333, 536
HpyF3I CTNAG 4 cut(s) 74, 209, 332, 567
Hsp92II CATG 1 cut(s) 694
Kzo9I GATC 1 cut(s) 84
LguI GCTCTTC 2 cut(s) 105, 113
LmnI GCTCC 2 cut(s) 142, 217
LweI GCATC 4 cut(s) 193, 361, 367, 373
MalI GATC 1 cut(s) 86
MboI GATC 1 cut(s) 84
MboII GAAGA 8 cut(s) 3, 41, 94, 122, 130, 199, 604, 734
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 1 cut(s) 583
MlyI GAGTC 2 cut(s) 50, 62
MmeI TCCRAC 1 cut(s) 633
MnlI CCTC 9 cut(s) 204, 369, 372, 562, 565, 588, 651, 705, 738
MseI TTAA 2 cut(s) 399, 429
MspA1I CMGCKG 1 cut(s) 336
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 168, 169
Mva1269I GAATGC 1 cut(s) 619
MvnI CGCG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 333, 536
NciI CCSGG 2 cut(s) 168, 169
NdeII GATC 1 cut(s) 84
NlaIII CATG 1 cut(s) 694
NlaIV GGNNCC 2 cut(s) 61, 172
NmeAIII GCCGAG 2 cut(s) 176, 199
NotI GCGGCCGC 1 cut(s) 337
PciSI GCTCTTC 2 cut(s) 105, 113
PctI GAATGC 1 cut(s) 619
PflMI CCANNNNNTGG 1 cut(s) 235
PkrI GCNGC 3 cut(s) 338, 341, 541
PleI GAGTC 2 cut(s) 49, 62
PpsI GAGTC 2 cut(s) 49, 62
PpuMI RGGWCCY 1 cut(s) 704
Psp5II RGGWCCY 1 cut(s) 704
PspN4I GGNNCC 2 cut(s) 61, 172
PspPI GGNCC 3 cut(s) 171, 655, 704
PspPPI RGGWCCY 1 cut(s) 704
SapI GCTCTTC 2 cut(s) 105, 113
SaqAI TTAA 2 cut(s) 399, 429
SatI GCNGC 3 cut(s) 337, 340, 540
Sau3AI GATC 1 cut(s) 84
Sau96I GGNCC 3 cut(s) 171, 655, 704
SchI GAGTC 2 cut(s) 50, 62
ScrFI CCNGG 2 cut(s) 168, 169
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 4 cut(s) 193, 361, 367, 373
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 2 cut(s) 655, 704
SmaI CCCGGG 1 cut(s) 169
SmlI CTYRAG 3 cut(s) 221, 696, 729
SmoI CTYRAG 3 cut(s) 221, 696, 729
Sse9I AATT 1 cut(s) 583
SsiI CCGC 6 cut(s) 140, 336, 340, 347, 539, 719
StyD4I CCNGG 2 cut(s) 166, 167
StyI CCWWGG 1 cut(s) 465
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 581
TasI AATT 1 cut(s) 583
TauI GCSGC 3 cut(s) 339, 342, 542
Tru1I TTAA 2 cut(s) 399, 429
Tru9I TTAA 2 cut(s) 399, 429
TscAI CASTG 1 cut(s) 610
TspDTI ATGAA 2 cut(s) 65, 123
TspMI CCCGGG 1 cut(s) 167
TspRI CASTG 1 cut(s) 610
Van91I CCANNNNNTGG 1 cut(s) 235
VpaK11BI GGWCC 2 cut(s) 655, 704
XagI CCTNNNNNAGG 1 cut(s) 699
XapI RAATTY 1 cut(s) 583
XmaI CCCGGG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.