RchiOBHm_Chr3g0457551

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0018505
Physical Location & Seq
Forward (+)
6625429 .. 6628431
3003 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 2409 bp
ATGGGTTTGCCTTCAAAGTCCAAACCTTTGCAGTTGAAACACTTCATGTCCTCTTCAAAGTTCAAACCTTTAGCTATGAACTTGGGTAGATTGACCATAAACTTGTCAATTTTAGAAACCCATTTGCCCAAATGCAAGAATCTCAAGCAGTTCAATCAAATACTATCTCAGATGATCCTCACTGGTTTCATTAGGGACACATATGCTGCAAGTAGAGTCCTCAAGTTCTCCACTGACTCTTCTTTGAGTGACATTGATTTGTCATTAAGAATTTTCAACCACATTGAGAACTCAAATGGGTTCATTTGGAACACTATGATGAAAGCTTATATACAAAGAAGCTGTCCCCAAAAGACTTTGAGTCTTTACAAATTGATGTTGGGTAAGAATGGGGATAGAGATAATTATACATACCCAATCCTAGTTCAAGCTTGTGCTATGAGAGCATCAGAGTTTGAAGGGAAACAGATGCATAGTCATATTTTGAAGTTTGGGTTTGATTCAGATGTGTATGTGCAGAACACATTGATCAACATGTACTCAGTTTGTGACAATATGAGGGATGCACGCAATGTGTTTGATGAAATGCCTGTGTTGGATTCGGTGGCGTGGAATTCGATATTGGCTGGCTATGTTAGGGTGGGGGATGTAAAGCAGGCTAAGTGTATATATGATCAGATGCCAGTGAGGAACACGATTGCTTCGAATTCTATGATTGTGTTGTTTGGTAAAAGAGGTTGTGTGACTGAGGCTCGGCATTTGTTTGATGAACTGCCTGAGAAGGATATGGTTTCGTGGAGCGCGTTGATTTCTTGTTTCGAGCAAAATGAGATGTATGAGGAGGCTTTGGATATGTTTGTGAAAATGGTTGCTAATGGAGTTATGGTGGATGAGGTTGTGGTGGTTAGTGTGCTTTCGGCATGTGCACATTTGTCAGCTGTTCACACAGGGAAGTTGATCCATGGGTTAGTTGTGAAAATTGGAATTGAAAGTTATGTTAATCTTCAAAATGCTTTTATTCATATGTATTCCAGTTGTGGGGAGATAATGGTTGCCGAGAAACTGTTCAATGCAGCCTACAACCTGGATCAGATATCTTGGAACTCAATGATATCGGGGTACTTGAGATGTGGTTTAGTTGAAGCTGCTAAGACATCATTTGATTCCATGCCTGAGAAGGATGTAGTGTCTTGGAGTGCAATGATATCAGGCTATGCTCAGCATGACCGGTTTTCAGAAACTTTGGCATTGTTCCAGGAGATGCAGCTGTGTGGAATTAGGCCCGATGAGACCACTTTGGTGAGCGTCATCTCGGCTTGCACTCATTTGGCTGCCCTTGACCTGGGCCAATGGATTCATGCTTATATAAGGAAAAATAGCCTTAAAGTTAATGTCTTTCTTGGGACAACCCTTATTAACATGTACTTGAAATGTGGGTGTGTGGAAAATGCATTGGAGGTTTTCGAGGAGACAGCAGAAAAGGGAGTTTCTACTTGGAATGCTCTTATTCTTGGGTTGGCAATGAATGGGTTGGTGGAGAAGTCGCTTGAAATGTTTGCAAAGATGAAGACAAGGGGTGTGACACCTAATGAAATAACCTTTATGGGAGTTATTGGAGCTTGTCGTCACATGGGCTTGGTAGATGAGGGGCGTCGCCACTTCGATTCCATGATGCAGGAACACAAGATAGAACCCAATGTTAAGCATTACGGATGCATGGTTGATCTTCTTGGACGTGCTGGTATGCTCAAGGAGGCAGAGGACCTCATTGAAAGTATGCCTATGACACCAGATGTTGCTACTTGGGGTGCCTTACTGGGGGCTTGTAAGAAACATGGGGACCATGACAGGGGTGAGAGGATAGGAAGAAAGCTCATTGAGCTCGATCCTAACCATGATGGGTTCCATGTGTTGTTGTCCAATATATGTGCTTCGAAAGGTGATTGGGATGGTGTTCATGAGATTAGGGGAATAATGATGCAACATGGGGTGGTAAAGACCCCAGGTTGTAGCATGATCGAAGCAGATGGTGTAGTTCATGAATTTCTAGCAGGAGATAAGAAACACCCTCGAATGAAAGATATTGAGGTTATGCTAGATGAAATGGCTCAGAAATTGAAGAGGGAAGGTTATGCACCAGATACAAATGAGGTATCCTTTGACATTGATGAAGAGGAAAAGGAAACTGTTCTTTTCAGACACAGTGAGAAACTGGCAATTGCCTTTGGGCTAATCGCTATCAGTCCACCATCACCAATACGAATAATAAAGAATTTGCGAATATGTAACGATTGTCACATGGCAGCAAAGTTCGTCTCGAAAGCTTTTGGTCGTGACATTGTGGTGAGGGATAAGCACCGCTTTCACCACTTTAAGCAGGGATCTTGTTCCTGCAATGACTATTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

802

Amino Acids

90.18

Weight (kDa)

6.38

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 101 - 146 1.1e-06 PPR repeat family
PPR_2 PF13041 262 - 310 6e-06 PPR repeat family
PPR PF01535 264 - 294 2.1e-06 PPR repeat
PPR PF01535 365 - 394 8.3e-06 PPR repeat
PPR_2 PF13041 393 - 441 7.5e-10 PPR repeat family
PPR PF01535 396 - 426 9e-07 PPR repeat
PPR_2 PF13041 495 - 541 3.4e-10 PPR repeat family
PPR PF01535 497 - 527 1.2e-06 PPR repeat
E_motif PF20431 612 - 674 2.2e-13 E motif
DYW_deaminase PF14432 710 - 802 2.8e-40 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018505)

Species Orthologous Gene IDs
malus_domestica MD04G1191500.v1.1
prunus_persica Prupe.6G310100_v2.0.a1
pyrus_communis pycom04g16910
rosa_chinensis RchiOBHm_Chr3g0457551
rosa_laevigata RLG00000025211
rosa_multiflora Rmu_sc0007404.1_g000005
rosa_roxburghii Rroxscaffold_6G00421740
rosa_rugosa Rorug03G0021300
rosa_samantha Rh3DG085600
rosa_wichuraiana Rw3G007030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1808
AccII CGCG 1 cut(s) 803
AciI CCGC 1 cut(s) 2359
AclWI GGATC 5 cut(s) 169, 952, 1095, 1880, 2389
AcsI RAATTY 5 cut(s) 270, 613, 706, 2042, 2272
AcyI GRCGYC 1 cut(s) 1651
AfaI GTAC 3 cut(s) 539, 1121, 1424
AfiI CCNNNNNNNGG 4 cut(s) 1038, 1342, 1818, 1849
AflIII ACRYGT 2 cut(s) 534, 1419
AgeI ACCGGT 1 cut(s) 1227
AhdI GACNNNNNGTC 1 cut(s) 360
AjiI CACGTC 1 cut(s) 1736
AjnI CCWGG 4 cut(s) 1083, 1254, 1341, 2002
AjuI GAANNNNNNNTTGG 2 cut(s) 605, 637
AleI CACNNNNGTG 1 cut(s) 1298
Alw21I GWGCWC 2 cut(s) 928, 1884
Alw26I GTCTC 3 cut(s) 1283, 1463, 2320
Alw44I GTGCAC 1 cut(s) 924
AlwI GGATC 5 cut(s) 169, 952, 1095, 1880, 2389
AoxI GGCC 2 cut(s) 1280, 1345
ApaLI GTGCAC 1 cut(s) 924
ApeKI GCWGC 6 cut(s) 206, 1073, 1145, 1264, 1331, 2303
ApoI RAATTY 5 cut(s) 270, 613, 706, 2042, 2272
ArsI GACNNNNNNTTYG 2 cut(s) 328, 360
AsiGI ACCGGT 1 cut(s) 1227
Asp700I GAANNNNTTC 3 cut(s) 41, 1064, 2187
AspLEI GCGC 1 cut(s) 803
AspS9I GGNCC 4 cut(s) 1281, 1345, 1762, 1840
AsuHPI GGTGA 6 cut(s) 1312, 1865, 1952, 2244, 2356, 2357
AsuII TTCGAA 2 cut(s) 704, 1934
AvaII GGWCC 2 cut(s) 1762, 1840
BaeGI GKGCMC 1 cut(s) 928
BanI GGYRCC 1 cut(s) 1808
BanII GRGCYC 1 cut(s) 1884
BbsI GAAGAC 1 cut(s) 1574
Bbv12I GWGCWC 2 cut(s) 928, 1884
BbvI GCAGC 6 cut(s) 193, 1085, 1132, 1276, 1318, 2315
BccI CCATC 4 cut(s) 1892, 1943, 2021, 2257
BciT130I CCWGG 4 cut(s) 1085, 1256, 1343, 2004
BciVI GTATCC 1 cut(s) 2164
BclI TGATCA 2 cut(s) 528, 673
BcoDI GTCTC 3 cut(s) 1283, 1463, 2320
BfaI CTAG 3 cut(s) 422, 2048, 2096
BfuI GTATCC 1 cut(s) 2164
BisI GCNGC 6 cut(s) 207, 1074, 1146, 1265, 1332, 2304
BlpI GCTNAGC 1 cut(s) 1218
BlsI GCNGC 6 cut(s) 208, 1075, 1147, 1266, 1333, 2305
Bme1390I CCNGG 4 cut(s) 1085, 1256, 1343, 2004
Bme18I GGWCC 2 cut(s) 1762, 1840
BmeRI GACNNNNNGTC 1 cut(s) 360
BmgBI CACGTC 1 cut(s) 1736
BmgT120I GGNCC 4 cut(s) 1281, 1345, 1762, 1840
BmiI GGNNCC 3 cut(s) 1810, 1841, 1904
BmrFI CCNGG 4 cut(s) 1085, 1256, 1343, 2004
BmrI ACTGGG 1 cut(s) 1826
BmsI GCATC 8 cut(s) 455, 459, 553, 669, 1251, 1662, 1703, 1968
BmuI ACTGGG 1 cut(s) 1826
BpiI GAAGAC 1 cut(s) 1574
Bpu1102I GCTNAGC 1 cut(s) 1218
Bpu14I TTCGAA 2 cut(s) 704, 1934
BpuEI CTTGAG 4 cut(s) 128, 206, 1144, 1733
BsaHI GRCGYC 1 cut(s) 1651
BsaI GGTCTC 1 cut(s) 1283
BsaJI CCNNGG 3 cut(s) 961, 1342, 2002
BsaWI WCCGGW 1 cut(s) 1227
BsaXI ACNNNNNCTCC 2 cut(s) 870, 900
Bsc4I CCNNNNNNNGG 4 cut(s) 1038, 1342, 1818, 1849
Bse118I RCCGGY 1 cut(s) 1227
Bse1I ACTGG 5 cut(s) 187, 683, 1032, 1821, 2217
Bse3DI GCAATG 4 cut(s) 577, 1206, 1527, 2401
BseBI CCWGG 4 cut(s) 1085, 1256, 1343, 2004
BseDI CCNNGG 3 cut(s) 961, 1342, 2002
BseGI GGATG 6 cut(s) 568, 652, 895, 1186, 1718, 1954
BseLI CCNNNNNNNGG 4 cut(s) 1038, 1342, 1818, 1849
BseMI GCAATG 4 cut(s) 577, 1206, 1527, 2401
BseMII CTCAG 7 cut(s) 182, 555, 738, 768, 1164, 1232, 2123
BseNI ACTGG 5 cut(s) 187, 683, 1032, 1821, 2217
BseRI GAGGAG 2 cut(s) 854, 1481
BseSI GKGCMC 1 cut(s) 928
BseXI GCAGC 6 cut(s) 193, 1085, 1132, 1276, 1318, 2315
BsgI GTGCAG 1 cut(s) 536
Bsh1236I CGCG 1 cut(s) 803
BshFI GGCC 2 cut(s) 1282, 1347
BshNI GGYRCC 1 cut(s) 1808
BshTI ACCGGT 1 cut(s) 1227
BsiHKAI GWGCWC 2 cut(s) 928, 1884
BsiSI CCGG 1 cut(s) 1228
BslFI GGGAC 4 cut(s) 209, 330, 1417, 1853
BslI CCNNNNNNNGG 4 cut(s) 1038, 1342, 1818, 1849
BsmAI GTCTC 3 cut(s) 1283, 1463, 2320
BsmBI CGTCTC 1 cut(s) 2320
BsmFI GGGAC 4 cut(s) 209, 330, 1417, 1853
BsmI GAATGC 1 cut(s) 1504
BsnI GGCC 2 cut(s) 1282, 1347
Bso31I GGTCTC 1 cut(s) 1283
Bsp119I TTCGAA 2 cut(s) 704, 1934
Bsp1286I GDGCHC 2 cut(s) 928, 1884
Bsp143I GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
Bsp1720I GCTNAGC 1 cut(s) 1218
Bsp19I CCATGG 1 cut(s) 961
BspACI CCGC 1 cut(s) 2359
BspANI GGCC 2 cut(s) 1282, 1347
BspCNI CTCAG 7 cut(s) 181, 554, 739, 769, 1165, 1231, 2122
BspFNI CGCG 1 cut(s) 803
BspHI TCATGA 2 cut(s) 1957, 2038
BspLI GGNNCC 3 cut(s) 1810, 1841, 1904
BspPI GGATC 5 cut(s) 169, 952, 1095, 1880, 2389
BspT104I TTCGAA 2 cut(s) 704, 1934
BspT107I GGYRCC 1 cut(s) 1808
BspTNI GGTCTC 1 cut(s) 1283
BsrDI GCAATG 4 cut(s) 577, 1206, 1527, 2401
BsrFI RCCGGY 1 cut(s) 1227
BsrI ACTGG 5 cut(s) 187, 683, 1032, 1821, 2217
BssAI RCCGGY 1 cut(s) 1227
BssECI CCNNGG 3 cut(s) 961, 1342, 2002
BssMI GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
BssNI GRCGYC 1 cut(s) 1651
BssT1I CCWWGG 1 cut(s) 961
Bst2UI CCWGG 4 cut(s) 1085, 1256, 1343, 2004
Bst4CI ACNGT 3 cut(s) 1065, 2188, 2204
Bst6I CTCTTC 4 cut(s) 58, 244, 2114, 2166
BstACI GRCGYC 1 cut(s) 1651
BstBI TTCGAA 2 cut(s) 704, 1934
BstC8I GCNNGC 4 cut(s) 568, 628, 657, 1318
BstDEI CTNAG 9 cut(s) 168, 541, 660, 747, 777, 1149, 1173, 1218, 2109
BstDSI CCRYGG 1 cut(s) 961
BstF5I GGATG 6 cut(s) 568, 652, 895, 1186, 1718, 1954
BstFNI CGCG 1 cut(s) 803
BstHHI GCGC 1 cut(s) 803
BstKTI GATC 9 cut(s) 177, 531, 676, 960, 1090, 1726, 1888, 2019, 2384
BstMAI GTCTC 3 cut(s) 1283, 1463, 2320
BstMBI GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
BstMWI GCNNNNNNNGC 2 cut(s) 443, 1879
BstNI CCWGG 4 cut(s) 1085, 1256, 1343, 2004
BstNSI RCATGY 3 cut(s) 538, 924, 1423
BstSCI CCNGG 4 cut(s) 1083, 1254, 1341, 2002
BstSLI GKGCMC 1 cut(s) 928
BstUI CGCG 1 cut(s) 803
BstV1I GCAGC 6 cut(s) 193, 1085, 1132, 1276, 1318, 2315
BstV2I GAAGAC 1 cut(s) 1574
BstX2I RGATCY 1 cut(s) 2381
BstYI RGATCY 1 cut(s) 2381
BsuI GTATCC 1 cut(s) 2164
BsuRI GGCC 2 cut(s) 1282, 1347
BtgI CCRYGG 1 cut(s) 961
BtrI CACGTC 1 cut(s) 1736
BtsCI GGATG 6 cut(s) 568, 652, 895, 1186, 1718, 1954
BtsIMutI CAGTG 4 cut(s) 180, 231, 690, 2209
Cac8I GCNNGC 4 cut(s) 568, 628, 657, 1318
CciI TCATGA 2 cut(s) 1957, 2038
CfoI GCGC 1 cut(s) 803
Cfr10I RCCGGY 1 cut(s) 1227
Cfr13I GGNCC 4 cut(s) 1281, 1345, 1762, 1840
CseI GACGC 2 cut(s) 1294, 1640
Csp6I GTAC 3 cut(s) 538, 1120, 1423
CspAI ACCGGT 1 cut(s) 1227
CviQI GTAC 3 cut(s) 538, 1120, 1423
DdeI CTNAG 9 cut(s) 168, 541, 660, 747, 777, 1149, 1173, 1218, 2109
DpnI GATC 9 cut(s) 176, 530, 675, 959, 1089, 1725, 1887, 2018, 2383
DpnII GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
DriI GACNNNNNGTC 1 cut(s) 360
Eam1104I CTCTTC 4 cut(s) 58, 244, 2114, 2166
Eam1105I GACNNNNNGTC 1 cut(s) 360
EarI CTCTTC 4 cut(s) 58, 244, 2114, 2166
Ecl136II GAGCTC 1 cut(s) 1882
Eco130I CCWWGG 1 cut(s) 961
Eco24I GRGCYC 1 cut(s) 1884
Eco31I GGTCTC 1 cut(s) 1283
Eco32I GATATC 3 cut(s) 1095, 1113, 1206
Eco47I GGWCC 2 cut(s) 1762, 1840
Eco53kI GAGCTC 1 cut(s) 1882
EcoICRI GAGCTC 1 cut(s) 1882
EcoO109I RGGNCCY 1 cut(s) 1762
EcoRI GAATTC 2 cut(s) 613, 706
EcoRII CCWGG 4 cut(s) 1083, 1254, 1341, 2002
EcoRV GATATC 3 cut(s) 1095, 1113, 1206
EcoT14I CCWWGG 1 cut(s) 961
EcoT22I ATGCAT 3 cut(s) 474, 1453, 1718
EcoT38I GRGCYC 1 cut(s) 1884
ErhI CCWWGG 1 cut(s) 961
Esp3I CGTCTC 1 cut(s) 2320
FalI AAGNNNNNCTT 2 cut(s) 2345, 2377
FaqI GGGAC 4 cut(s) 209, 330, 1417, 1853
FauNDI CATATG 2 cut(s) 202, 1023
FbaI TGATCA 2 cut(s) 528, 673
Fnu4HI GCNGC 6 cut(s) 207, 1074, 1146, 1265, 1332, 2304
FokI GGATG 6 cut(s) 575, 659, 902, 1193, 1725, 1961
FriOI GRGCYC 1 cut(s) 1884
Fsp4HI GCNGC 6 cut(s) 207, 1074, 1146, 1265, 1332, 2304
FspBI CTAG 3 cut(s) 422, 2048, 2096
GlaI GCGC 1 cut(s) 802
GluI GCNGC 6 cut(s) 207, 1074, 1146, 1265, 1332, 2304
HaeIII GGCC 2 cut(s) 1282, 1347
HapII CCGG 1 cut(s) 1228
HgaI GACGC 2 cut(s) 1294, 1640
HhaI GCGC 1 cut(s) 803
Hin1I GRCGYC 1 cut(s) 1651
Hin6I GCGC 1 cut(s) 801
HinP1I GCGC 1 cut(s) 801
HindIII AAGCTT 3 cut(s) 324, 429, 2322
HinfI GANTC 9 cut(s) 139, 216, 236, 361, 500, 599, 1163, 1354, 1664
HpaII CCGG 1 cut(s) 1228
HphI GGTGA 6 cut(s) 1312, 1865, 1952, 2244, 2356, 2357
Hpy166II GTNNAC 3 cut(s) 926, 943, 2246
Hpy188I TCNGA 8 cut(s) 171, 451, 505, 678, 1092, 1237, 2112, 2198
Hpy188III TCNNGA 4 cut(s) 1958, 2039, 2317, 2333
Hpy8I GTNNAC 3 cut(s) 926, 943, 2246
Hpy99I CGWCG 1 cut(s) 1656
HpyAV CCTTC 5 cut(s) 21, 452, 775, 1171, 2120
HpyCH4III ACNGT 3 cut(s) 1065, 2188, 2204
HpyCH4IV ACGT 1 cut(s) 1735
HpyF10VI GCNNNNNNNGC 2 cut(s) 443, 1879
HpyF3I CTNAG 9 cut(s) 168, 541, 660, 747, 777, 1149, 1173, 1218, 2109
HpySE526I ACGT 1 cut(s) 1735
Hsp92I GRCGYC 1 cut(s) 1651
HspAI GCGC 1 cut(s) 801
Ksp22I TGATCA 2 cut(s) 528, 673
Kzo9I GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
LmnI GCTCC 2 cut(s) 798, 1616
Lsp1109I GCAGC 6 cut(s) 193, 1085, 1132, 1276, 1318, 2315
LweI GCATC 8 cut(s) 455, 459, 553, 669, 1251, 1662, 1703, 1968
MaeI CTAG 3 cut(s) 422, 2048, 2096
MaeII ACGT 1 cut(s) 1735
MaeIII GTNAC 8 cut(s) 248, 548, 742, 1579, 1625, 2285, 2294, 2333
MalI GATC 9 cut(s) 176, 530, 675, 959, 1089, 1725, 1887, 2018, 2383
MboI GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
MboII GAAGA 8 cut(s) 45, 231, 995, 1579, 1718, 1878, 2131, 2183
MfeI CAATTG 1 cut(s) 2217
MflI RGATCY 1 cut(s) 2381
MhlI GDGCHC 2 cut(s) 928, 1884
MlyI GAGTC 3 cut(s) 225, 230, 370
MmeI TCCRAC 1 cut(s) 576
Mph1103I ATGCAT 3 cut(s) 474, 1453, 1718
MroXI GAANNNNTTC 3 cut(s) 41, 1064, 2187
MseI TTAA 7 cut(s) 266, 999, 1383, 1389, 1416, 1701, 2373
MslI CAYNNNNRTG 3 cut(s) 317, 1298, 2342
MspA1I CMGCKG 2 cut(s) 938, 1267
MspI CCGG 1 cut(s) 1228
MspR9I CCNGG 4 cut(s) 1085, 1256, 1343, 2004
MunI CAATTG 1 cut(s) 2217
Mva1269I GAATGC 1 cut(s) 1504
MvaI CCWGG 4 cut(s) 1085, 1256, 1343, 2004
MvnI CGCG 1 cut(s) 803
MwoI GCNNNNNNNGC 2 cut(s) 443, 1879
NcoI CCATGG 1 cut(s) 961
NdeI CATATG 2 cut(s) 202, 1023
NdeII GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
NlaIV GGNNCC 3 cut(s) 1810, 1841, 1904
NmeAIII GCCGAG 3 cut(s) 733, 1081, 1292
NmuCI GTSAC 7 cut(s) 248, 548, 742, 1579, 1625, 2294, 2333
NsiI ATGCAT 3 cut(s) 474, 1453, 1718
NspI RCATGY 3 cut(s) 538, 924, 1423
NspV TTCGAA 2 cut(s) 704, 1934
OliI CACNNNNGTG 1 cut(s) 1298
PagI TCATGA 2 cut(s) 1957, 2038
PciI ACATGT 2 cut(s) 534, 1419
PcsI WCGNNNNNNNCGW 2 cut(s) 701, 800
PctI GAATGC 1 cut(s) 1504
PdmI GAANNNNTTC 3 cut(s) 41, 1064, 2187
PfeI GAWTC 6 cut(s) 139, 500, 599, 1163, 1354, 1664
PfoI TCCNGGA 1 cut(s) 1254
PinAI ACCGGT 1 cut(s) 1227
PkrI GCNGC 6 cut(s) 208, 1075, 1147, 1266, 1333, 2305
PleI GAGTC 3 cut(s) 224, 230, 369
PpsI GAGTC 3 cut(s) 224, 230, 369
PpuMI RGGWCCY 1 cut(s) 1762
PscI ACATGT 2 cut(s) 534, 1419
Psp124BI GAGCTC 1 cut(s) 1884
Psp5II RGGWCCY 1 cut(s) 1762
Psp6I CCWGG 4 cut(s) 1083, 1254, 1341, 2002
PspGI CCWGG 4 cut(s) 1083, 1254, 1341, 2002
PspN4I GGNNCC 3 cut(s) 1810, 1841, 1904
PspPI GGNCC 4 cut(s) 1281, 1345, 1762, 1840
PspPPI RGGWCCY 1 cut(s) 1762
PsuI RGATCY 1 cut(s) 2381
PvuII CAGCTG 2 cut(s) 938, 1267
RsaI GTAC 3 cut(s) 539, 1121, 1424
RsaNI GTAC 3 cut(s) 538, 1120, 1423
RseI CAYNNNNRTG 3 cut(s) 317, 1298, 2342
SacI GAGCTC 1 cut(s) 1884
SaqAI TTAA 7 cut(s) 266, 999, 1383, 1389, 1416, 1701, 2373
SatI GCNGC 6 cut(s) 207, 1074, 1146, 1265, 1332, 2304
Sau3AI GATC 9 cut(s) 174, 528, 673, 957, 1087, 1723, 1885, 2016, 2381
Sau96I GGNCC 4 cut(s) 1281, 1345, 1762, 1840
SchI GAGTC 3 cut(s) 225, 230, 370
ScrFI CCNGG 4 cut(s) 1085, 1256, 1343, 2004
SduI GDGCHC 2 cut(s) 928, 1884
SfaNI GCATC 8 cut(s) 455, 459, 553, 669, 1251, 1662, 1703, 1968
SfuI TTCGAA 2 cut(s) 704, 1934
SinI GGWCC 2 cut(s) 1762, 1840
SmiMI CAYNNNNRTG 3 cut(s) 317, 1298, 2342
SmlI CTYRAG 4 cut(s) 143, 221, 1123, 1748
SmoI CTYRAG 4 cut(s) 143, 221, 1123, 1748
SsiI CCGC 1 cut(s) 2359
SspMI CTAG 3 cut(s) 422, 2048, 2096
SstI GAGCTC 1 cut(s) 1884
StyD4I CCNGG 4 cut(s) 1083, 1254, 1341, 2002
StyI CCWWGG 1 cut(s) 961
TaaI ACNGT 3 cut(s) 1065, 2188, 2204
TaiI ACGT 1 cut(s) 1738
TatI WGTACW 2 cut(s) 537, 1422
TfiI GAWTC 6 cut(s) 139, 500, 599, 1163, 1354, 1664
Tru1I TTAA 7 cut(s) 266, 999, 1383, 1389, 1416, 1701, 2373
Tru9I TTAA 7 cut(s) 266, 999, 1383, 1389, 1416, 1701, 2373
TscAI CASTG 4 cut(s) 187, 238, 690, 2209
TseFI GTSAC 7 cut(s) 248, 548, 742, 1579, 1625, 2294, 2333
TseI GCWGC 6 cut(s) 206, 1073, 1145, 1264, 1331, 2303
Tsp45I GTSAC 7 cut(s) 248, 548, 742, 1579, 1625, 2294, 2333
TspGWI ACGGA 1 cut(s) 1725
TspRI CASTG 4 cut(s) 187, 238, 690, 2209
VneI GTGCAC 1 cut(s) 924
VpaK11BI GGWCC 2 cut(s) 1762, 1840
XapI RAATTY 5 cut(s) 270, 613, 706, 2042, 2272
XceI RCATGY 3 cut(s) 538, 924, 1423
XmnI GAANNNNTTC 3 cut(s) 41, 1064, 2187
XspI CTAG 3 cut(s) 422, 2048, 2096
Zsp2I ATGCAT 3 cut(s) 474, 1453, 1718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.