RchiOBHm_Chr3g0459021

Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007386
Physical Location & Seq
Reverse (-)
7561608 .. 7567696
6089 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3381 bp
ATGTCGTCTTCAAGACCCAGTCACTCATCCAGCAATTCAGGGAGATCAAGGCACACTGCTAGAGTTATTGCTCAGACAACTGTAGATGCAAAGCTTCATGCAGATTTTGAGGAGTCGGGCAGTTCCTTTGACTACTCGAGCTCAGTGCGTGTTAGCAGTTCAGTTGCTGGGGATCAACAACCTAGGTCTGACAAAGTGACCACTGCTTATCTCCATCACATACAGAAAGGGAAGTTGATCCAGCCATTTGGCTGCTTGCTAGCCTTAGATGACAAAACTTTCAGGGTCATTGCATACAGTGAGAATGCCCCTGAAATGCTGACTATGGTTAGTCATGCCGTCCCAAGTGTTGGGGACCACCCAGTTCTTGGCATAGGAACAGATGTGAGAACAATTTTCACAGGCCCTAGTGCCTCTGCATTGCATAAGGCCCTCGGGTTCGGGGAGGTTTCTCTCTTAAATCCCATCTTAGTCCATTGCAAGTCATCTGGAAAGCCTTTCTATGCTATAGTCCACCGGGTAACAGGTAGCCTGGTCATTGATTTTGAACCGGTGAAGCCTTATGAAGTCCCCATGACTGCTGCTGGAGCTCTGCAATCATACAAACTTGCAGCCAAAGCAATTGCACGATTGCAGTCTTTGCCTAGTGGGAGCCTGGAGAGGCTTTGTGATACAATGGTTCAAGAGGTTTTTGAGCTCACTGGTTATGACAGGGTGATGGCCTATAAATTTCATGATGATGATCATGGGGAAGTTATTGCAGAGCTTACGAAGCCTGGCCTGGAGCCATATCTGGGTTTGCATTATCCATCCACTGATATACCTCAAGCTTCACGGTTCCTGTTTATGAAGAATAAGGTCCGTATGATTGTTGACTGTCGTGCTAAAAATGTCAAGGTCCTTCAAGATGAGAAGCTTCCTTTGGATCTAACATTGTGTGGTTCAACCCTCAGAGCCCCACATAGTTGCCATTTGCAATATATGGAGAACATGAATTCCATTGCTTCTCTTGTTATGGCAGTAGTGGTCAATGAAGGGGAAGGGGATGATGAGGTTGCCGGTCCTGATGCTGCGCAGACTCAAAAGAGAAAGAGACTGTGGGGTTTAGTAGTATGTCATAACACAACTCCAAGGTTTGTCCCTTTCCCTCTCAGATATGCCTGTGAGTTTCTAGCTCAAGTGTTTGCCATCCATGTGAATAAGGAATTAGAGTTGGAGGATCAGATTATTGAAAAGAACATCCTGCGTACCCAAACGCTGTTGTGTGATATGCTTTTGCGCGATGCTCCTTTGGGTATAGTGTCACAAACCCCTAATATTATGGATCTAGTGAAATGTGATGGGGCTGCCCTGCTATACAAGAACAAGATATGGAGACTTGGATTAACTCCAAGTGACTACCAGATTCAGGACATATCCTTGTGGCTCACTGAGAGCCATATGGATTCCACAGGTTTGAGTACAGATAGCTTGTATGACGCGGGGTTCCCTGGGGCTCTTGCTCTTGGTGATGTAGTGTGTGGAATGGCAGCTGTGAAGATAACTTCCAAGGACACAATTTTTTGGTTCCGATCCCACACTGCTGCAGAAATCCGATGGGGTGGTGCAAAACATGATCCGGATGAGAAGGACGATGGCTGGAAAATGCACCCCAGATCATCATTCAAGGCTTTCCTTGAAGTTGTGAAGACAAGGAGCTTACCTTGGAAGGACTATGAAATGGATGCAATTCATTCTTTGCAGCTTATTCTGAGGAATGCATTCAAGGATGTGGGAACCATGGATGTAAACAACAGTGGAATCCAGATGAGGCTTAGTGACTTGAAAGTTGATGGTATGCAAGAACTGGAAGCAGTGACAGGTGAGATGGTCCGGTTGATTGAAACAGCAACAGTGCCAATTTTGGCAGTTGATGTTGATGGGTCAGTTAATGGGTGGAACACAAAAATTTCCGAGTTAACTGGTCTTCCTGTTGATGAAGCAATTGGAAAGAATTTACTCACACTTGTGGAAGAATCTTCAACTAGCATGGTGGAAAGGATGCTGGAGTTGGCATTGCAAGGCAAAGAGGAACAAAACATCCAATTCGAGATAAAAACACACGGTGATAGGACTGACTTTGGTCCCATCAGGTTAGTTGTGAATGCTTGTGCAAGCAGAGATATTCATGAAAAAGTTGTGGGAGTGTGTTTTGTGGCCCAAGATATCACTGGTCAGAAGACTGTGATGGACAAGTTCACTCGCATTGAAGGTGATTATAAAGCAATTGTACAAAACCCAAGTCCATTGATCCCCCCAATATTTGGCACTGATGAATTTGGCTGGTGTTCTGAGTGGAATCCAGCAATGACTAAGTTAACTGGGTGGAAACGAGAGGAGGTAATGGATAAAATGCTGTTGGGGGAGGTTTTTGGGATCAACATGGCTTGTTGTCCTCTCAAGAATCAAGAAGCTTTTGTGAATCTTGGTGTTGTAATCAATCACGCCATGACTGGTCAGGTGTCTGAAAAGGTTCCTTTTGGTTTCTGGAATCGAGTTGGAAAGTACACTGAATGTTTGTTGTGTGTAAGTAAGAAATTGGACAGTGAGGGTGCAGTCACTGGGGTCTTTTGCTTCTTGCAGCTTGCTAGCCCAGAATTGCAACAAGCACTTCATGTCCAACGTTTATCTGAACAAACCGCTATGAAGAGATTAAAAGCATTAGCTTATATTAAAAGGCAGGTCAGGAATCCTTTATCTGGAATACTATTTTCTCGGAAAATGATCGAGGGTACTGAGTTGGGAGCAGAACAAAAAAAGCTCGTGCATACCAGTGCCCAGTGCCAGCAGCAGCTCAGCAAAATACTTGACGACTCTGATCTTGATAGCATCATTGATGGCTACTTGGACCTGGAAATGGTTGAGTTCACTTTGCATGAAGTATTGGTTGCCTCTATTAGTCAAGTCATGATTAAGAGCAACGCCAAGAGTATCCCGATTGTCCAAGATGCAAATGAAGAGATCATGACTGAGACAATGTATGGCGATAGTCTTAGGCTTCAACAAGTCTTGGCTGATTTCTTGTCAGTGTCGGTTAATTATATGCCAACCGGAGGCCAGCTTACTGTAGCAGTTAATTTGACAAAAGATCAGCTGGGACAATCTGTTCATCTCGTACATTTGGAACTCAGGATATCACATGGGGGTAGTGGGATTCCAGAAGGATTACTGAACCAGATGTTTGGAACAGATGGAGACGTATCTGAAGAAGGCATTAGCCTACTCATAAGCAGAAAGCTAGTGAAGCTCATGAATGGAGATGTACAGTACCTCCGGGAAGCAGGAAAGTCAACCTTCATCATATCTGCTGAACTTGCTGCTGCACATAAGATGAGTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0006417 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0007602 GO:0008150 GO:0008152 GO:0009314 GO:0009416 GO:0009581 GO:0009582 GO:0009583 GO:0009585 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009639 GO:0009640 GO:0009642 GO:0009791 GO:0009881 GO:0009883 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010017 GO:0010018 GO:0010114 GO:0010161 GO:0010201 GO:0010203 GO:0010218 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0016301 GO:0016310 GO:0016604 GO:0016740 GO:0016772 GO:0016773 GO:0017148 GO:0019222 GO:0019538 GO:0023052 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031516 GO:0031974 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0034248 GO:0034249 GO:0036211 GO:0038023 GO:0042221 GO:0042802 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0046685 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051606 GO:0051716 GO:0055122 GO:0060089 GO:0060255 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071490 GO:0071491 GO:0071704 GO:0080090 GO:0097159 GO:0104004 GO:0140096 GO:1901363 GO:1901564 GO:2000112 GO:2000113
KEGG Pathways
Metabolic & Signaling
ko04712 map04712
Pfam Domains
Protein Families
GAF HATPase_c HisKA PAS PAS_2 PHY

Protein Analysis

1126

Amino Acids

124.29

Weight (kDa)

5.67

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAS_2 PF08446 69 - 185 3.4e-35 PAS fold
GAF PF01590 219 - 402 5.3e-16 GAF domain
PHY PF00360 416 - 589 3.2e-55 Phytochrome region
PAS PF00989 622 - 736 2.3e-23 PAS fold
PAS_4 PF08448 630 - 740 1.4e-07 PAS fold
PAS PF00989 752 - 874 7.9e-21 PAS fold
HisKA PF00512 897 - 956 2.9e-08 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 1008 - 1115 7.4e-13 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 2259
Acc16I TGCGCA 1 cut(s) 1074
Acc36I ACCTGC 1 cut(s) 2710
AccB7I CCANNNNNTGG 3 cut(s) 350, 368, 2303
AccII CGCG 2 cut(s) 1281, 1481
AccIII TCCGGA 1 cut(s) 1618
AciI CCGC 2 cut(s) 1481, 2679
AclI AACGTT 1 cut(s) 2662
AclWI GGATC 9 cut(s) 180, 232, 933, 1227, 1332, 1566, 1610, 2284, 2423
AcsI RAATTY 5 cut(s) 728, 994, 1947, 1993, 2315
AcuI CTGAAG 1 cut(s) 3264
AdeI CACNNNGTG 1 cut(s) 2105
AfaI GTAC 8 cut(s) 1249, 1462, 2271, 2546, 2773, 3156, 3303, 3308
AfiI CCNNNNNNNGG 8 cut(s) 350, 368, 794, 1408, 2303, 2738, 2896, 3092
AgeI ACCGGT 1 cut(s) 550
AjnI CCWGG 6 cut(s) 531, 654, 775, 780, 1489, 2889
AjuI GAANNNNNNNTTGG 2 cut(s) 905, 937
AleI CACNNNNGTG 1 cut(s) 2006
AloI GAACNNNNNNTCC 6 cut(s) 980, 1012, 2064, 2096, 3129, 3161
Alw21I GWGCWC 3 cut(s) 143, 592, 699
Alw26I GTCTC 4 cut(s) 1087, 1369, 3005, 3228
AlwI GGATC 9 cut(s) 180, 232, 933, 1227, 1332, 1566, 1610, 2284, 2423
AlwNI CAGNNNCTG 2 cut(s) 167, 2600
Ama87I CYCGRG 2 cut(s) 136, 434
Aor13HI TCCGGA 1 cut(s) 1618
AoxI GGCC 6 cut(s) 403, 429, 720, 778, 2196, 3094
ApoI RAATTY 5 cut(s) 728, 994, 1947, 1993, 2315
ArsI GACNNNNNNTTYG 2 cut(s) 2266, 2298
AsiGI ACCGGT 1 cut(s) 550
Asp700I GAANNNNTTC 2 cut(s) 1760, 2511
AspA2I CCTAGG 1 cut(s) 182
AspLEI GCGC 2 cut(s) 1075, 1281
AsuC2I CCSGG 2 cut(s) 518, 3314
AsuHPI GGTGA 6 cut(s) 565, 727, 1520, 1874, 2117, 2264
AsuNHI GCTAGC 2 cut(s) 259, 2627
AvaI CYCGRG 2 cut(s) 136, 434
AvaII GGWCC 7 cut(s) 355, 859, 898, 1061, 1870, 2123, 2887
AvrII CCTAGG 1 cut(s) 182
BaeGI GKGCMC 1 cut(s) 2818
BaeI ACNNNNGTAYC 2 cut(s) 663, 696
BanII GRGCYC 5 cut(s) 143, 592, 699, 958, 1498
BauI CACGAG 1 cut(s) 2801
BbsI GAAGAC 3 cut(s) 1694, 1958, 2225
Bbv12I GWGCWC 3 cut(s) 143, 592, 699
BceAI ACGGC 1 cut(s) 323
BcgI CGANNNNNNTGC 2 cut(s) 127, 161
BciT130I CCWGG 6 cut(s) 533, 656, 777, 782, 1491, 2891
BciVI GTATCC 1 cut(s) 2981
BclI TGATCA 1 cut(s) 742
BcnI CCSGG 2 cut(s) 518, 3314
BcoDI GTCTC 4 cut(s) 1087, 1369, 3005, 3228
BfmI CTRYAG 4 cut(s) 81, 507, 1584, 3105
BfuAI ACCTGC 1 cut(s) 2710
BfuI GTATCC 1 cut(s) 2981
BlnI CCTAGG 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 2834
Bme1390I CCNGG 8 cut(s) 518, 533, 656, 777, 782, 1491, 2891, 3314
Bme18I GGWCC 7 cut(s) 355, 859, 898, 1061, 1870, 2123, 2887
BmeT110I CYCGRG 2 cut(s) 136, 434
BmiI GGNNCC 9 cut(s) 356, 653, 786, 839, 1487, 1568, 1777, 2125, 2514
BmrFI CCNGG 8 cut(s) 518, 533, 656, 777, 782, 1491, 2891, 3314
BmrI ACTGGG 5 cut(s) 12, 356, 2370, 2610, 2812
BmsI GCATC 7 cut(s) 76, 1057, 1273, 1714, 2031, 2877, 2977
BmtI GCTAGC 2 cut(s) 263, 2631
BmuI ACTGGG 5 cut(s) 12, 356, 2370, 2610, 2812
BoxI GACNNNNGTC 1 cut(s) 2121
BpiI GAAGAC 3 cut(s) 1694, 1958, 2225
BpmI CTGGAG 4 cut(s) 606, 677, 803, 2066
Bpu1102I GCTNAGC 1 cut(s) 2834
BpuEI CTTGAG 3 cut(s) 810, 1161, 2423
BpuMI CCSGG 2 cut(s) 518, 3314
BsaBI GATNNNNATC 1 cut(s) 741
BsaJI CCNNGG 8 cut(s) 182, 433, 1130, 1489, 1490, 1548, 1703, 1779
BsaWI WCCGGW 4 cut(s) 550, 1618, 1872, 3089
BsaXI ACNNNNNCTCC 2 cut(s) 3294, 3324
Bsc4I CCNNNNNNNGG 8 cut(s) 350, 368, 794, 1408, 2303, 2738, 2896, 3092
Bse118I RCCGGY 2 cut(s) 550, 1058
Bse3DI GCAATG 6 cut(s) 288, 419, 475, 999, 2054, 2352
Bse8I GATNNNNATC 1 cut(s) 741
BseAI TCCGGA 1 cut(s) 1618
BseBI CCWGG 6 cut(s) 533, 656, 777, 782, 1491, 2891
BseDI CCNNGG 8 cut(s) 182, 433, 1130, 1489, 1490, 1548, 1703, 1779
BseJI GATNNNNATC 1 cut(s) 741
BseLI CCNNNNNNNGG 8 cut(s) 350, 368, 794, 1408, 2303, 2738, 2896, 3092
BseMI GCAATG 6 cut(s) 288, 419, 475, 999, 2054, 2352
BseRI GAGGAG 2 cut(s) 125, 2390
BseSI GKGCMC 1 cut(s) 2818
BseYI CCCAGC 2 cut(s) 167, 3133
BsgI GTGCAG 2 cut(s) 2613, 3345
Bsh1236I CGCG 2 cut(s) 1281, 1481
BshFI GGCC 6 cut(s) 405, 431, 722, 780, 2198, 3096
BshTI ACCGGT 1 cut(s) 550
BsiHKAI GWGCWC 3 cut(s) 143, 592, 699
BsiHKCI CYCGRG 2 cut(s) 136, 434
BsiSI CCGG 7 cut(s) 517, 551, 1059, 1619, 1873, 3090, 3313
BslFI GGGAC 6 cut(s) 326, 368, 554, 1124, 2109, 3150
BslI CCNNNNNNNGG 8 cut(s) 350, 368, 794, 1408, 2303, 2738, 2896, 3092
BsmAI GTCTC 4 cut(s) 1087, 1369, 3005, 3228
BsmBI CGTCTC 1 cut(s) 3228
BsmFI GGGAC 6 cut(s) 326, 368, 554, 1124, 2109, 3150
BsmI GAATGC 4 cut(s) 310, 1760, 1762, 2149
BsnI GGCC 6 cut(s) 405, 431, 722, 780, 2198, 3096
BsoBI CYCGRG 2 cut(s) 136, 434
Bsp1286I GDGCHC 6 cut(s) 143, 592, 699, 958, 1498, 2818
Bsp13I TCCGGA 1 cut(s) 1618
Bsp1407I TGTACA 2 cut(s) 2269, 3301
Bsp1720I GCTNAGC 1 cut(s) 2834
Bsp19I CCATGG 1 cut(s) 1779
BspACI CCGC 2 cut(s) 1481, 2679
BspANI GGCC 6 cut(s) 405, 431, 722, 780, 2198, 3096
BspEI TCCGGA 1 cut(s) 1618
BspFNI CGCG 2 cut(s) 1281, 1481
BspHI TCATGA 5 cut(s) 733, 2167, 2946, 3003, 3288
BspLI GGNNCC 9 cut(s) 356, 653, 786, 839, 1487, 1568, 1777, 2125, 2514
BspMAI CTGCAG 1 cut(s) 1588
BspMI ACCTGC 1 cut(s) 2710
BspOI GCTAGC 2 cut(s) 263, 2631
BspPI GGATC 9 cut(s) 180, 232, 933, 1227, 1332, 1566, 1610, 2284, 2423
BsrDI GCAATG 6 cut(s) 288, 419, 475, 999, 2054, 2352
BsrFI RCCGGY 2 cut(s) 550, 1058
BsrGI TGTACA 2 cut(s) 2269, 3301
BssAI RCCGGY 2 cut(s) 550, 1058
BssECI CCNNGG 8 cut(s) 182, 433, 1130, 1489, 1490, 1548, 1703, 1779
BssSI CACGAG 1 cut(s) 2801
BssT1I CCWWGG 5 cut(s) 182, 1130, 1548, 1703, 1779
Bst2BI CACGAG 1 cut(s) 2801
Bst2UI CCWGG 6 cut(s) 533, 656, 777, 782, 1491, 2891
Bst6I CTCTTC 2 cut(s) 2681, 2991
BstAPI GCANNNNNTGC 1 cut(s) 640
BstAUI TGTACA 2 cut(s) 2269, 3301
BstC8I GCNNGC 7 cut(s) 257, 261, 2155, 2625, 2629, 2825, 3098
BstDSI CCRYGG 1 cut(s) 1779
BstFNI CGCG 2 cut(s) 1281, 1481
BstHHI GCGC 2 cut(s) 1075, 1281
BstMAI GTCTC 4 cut(s) 1087, 1369, 3005, 3228
BstMWI GCNNNNNNNGC 6 cut(s) 587, 617, 640, 772, 3283, 3353
BstNI CCWGG 6 cut(s) 533, 656, 777, 782, 1491, 2891
BstPAI GACNNNNGTC 1 cut(s) 2121
BstSCI CCNGG 8 cut(s) 516, 531, 654, 775, 780, 1489, 2889, 3312
BstSFI CTRYAG 4 cut(s) 81, 507, 1584, 3105
BstSLI GKGCMC 1 cut(s) 2818
BstUI CGCG 2 cut(s) 1281, 1481
BstV2I GAAGAC 3 cut(s) 1694, 1958, 2225
BstX2I RGATCY 2 cut(s) 925, 1324
BstXI CCANNNNNNTGG 2 cut(s) 248, 3221
BstYI RGATCY 2 cut(s) 925, 1324
BsuI GTATCC 1 cut(s) 2981
BsuRI GGCC 6 cut(s) 405, 431, 722, 780, 2198, 3096
BtgI CCRYGG 1 cut(s) 1779
BtgZI GCGATG 1 cut(s) 1296
BtsI GCAGTG 4 cut(s) 54, 201, 1578, 1860
BveI ACCTGC 1 cut(s) 2710
Cac8I GCNNGC 7 cut(s) 257, 261, 2155, 2625, 2629, 2825, 3098
CaiI CAGNNNCTG 2 cut(s) 167, 2600
CciI TCATGA 5 cut(s) 733, 2167, 2946, 3003, 3288
CfoI GCGC 2 cut(s) 1075, 1281
Cfr10I RCCGGY 2 cut(s) 550, 1058
CseI GACGC 1 cut(s) 1487
Csp6I GTAC 8 cut(s) 1248, 1461, 2270, 2545, 2772, 3155, 3302, 3307
CspAI ACCGGT 1 cut(s) 550
CviQI GTAC 8 cut(s) 1248, 1461, 2270, 2545, 2772, 3155, 3302, 3307
DraIII CACNNNGTG 1 cut(s) 2105
Eam1104I CTCTTC 2 cut(s) 2681, 2991
EarI CTCTTC 2 cut(s) 2681, 2991
Ecl136II GAGCTC 3 cut(s) 141, 590, 697
Eco130I CCWWGG 5 cut(s) 182, 1130, 1548, 1703, 1779
Eco24I GRGCYC 5 cut(s) 143, 592, 699, 958, 1498
Eco32I GATATC 2 cut(s) 2206, 3174
Eco47I GGWCC 7 cut(s) 355, 859, 898, 1061, 1870, 2123, 2887
Eco53kI GAGCTC 3 cut(s) 141, 590, 697
Eco57I CTGAAG 1 cut(s) 3264
Eco88I CYCGRG 2 cut(s) 136, 434
EcoICRI GAGCTC 3 cut(s) 141, 590, 697
EcoO109I RGGNCCY 3 cut(s) 404, 430, 898
EcoRI GAATTC 1 cut(s) 994
EcoRII CCWGG 6 cut(s) 531, 654, 775, 780, 1489, 2889
EcoRV GATATC 2 cut(s) 2206, 3174
EcoT14I CCWWGG 5 cut(s) 182, 1130, 1548, 1703, 1779
EcoT22I ATGCAT 1 cut(s) 1762
EcoT38I GRGCYC 5 cut(s) 143, 592, 699, 958, 1498
ErhI CCWWGG 5 cut(s) 182, 1130, 1548, 1703, 1779
Esp3I CGTCTC 1 cut(s) 3228
FalI AAGNNNNNCTT 2 cut(s) 3317, 3349
FaqI GGGAC 6 cut(s) 326, 368, 554, 1124, 2109, 3150
FauI CCCGC 1 cut(s) 1474
FauNDI CATATG 1 cut(s) 1440
FbaI TGATCA 1 cut(s) 742
FriOI GRGCYC 5 cut(s) 143, 592, 699, 958, 1498
FspI TGCGCA 1 cut(s) 1074
GlaI GCGC 2 cut(s) 1074, 1280
GsaI CCCAGC 2 cut(s) 171, 3137
GsuI CTGGAG 4 cut(s) 606, 677, 803, 2066
HaeIII GGCC 6 cut(s) 405, 431, 722, 780, 2198, 3096
HapII CCGG 7 cut(s) 517, 551, 1059, 1619, 1873, 3090, 3313
HgaI GACGC 1 cut(s) 1487
HhaI GCGC 2 cut(s) 1075, 1281
Hin6I GCGC 2 cut(s) 1073, 1279
HinP1I GCGC 2 cut(s) 1073, 1279
HincII GTYRAC 4 cut(s) 874, 1959, 2358, 3330
HindII GTYRAC 4 cut(s) 874, 1959, 2358, 3330
HindIII AAGCTT 4 cut(s) 92, 828, 914, 2451
HpaI GTTAAC 2 cut(s) 1959, 2358
HpaII CCGG 7 cut(s) 517, 551, 1059, 1619, 1873, 3090, 3313
HphI GGTGA 6 cut(s) 565, 727, 1520, 1874, 2117, 2264
Hpy166II GTNNAC 9 cut(s) 514, 874, 1789, 1959, 2238, 2358, 2547, 2907, 3330
Hpy8I GTNNAC 9 cut(s) 514, 874, 1789, 1959, 2238, 2358, 2547, 2907, 3330
HpyAV CCTTC 9 cut(s) 911, 1028, 1034, 1621, 1702, 2243, 3194, 3242, 3343
HpyCH4IV ACGT 2 cut(s) 2662, 3237
HpyF10VI GCNNNNNNNGC 6 cut(s) 587, 617, 640, 772, 3283, 3353
HpySE526I ACGT 2 cut(s) 2662, 3237
HspAI GCGC 2 cut(s) 1073, 1279
Kpn2I TCCGGA 1 cut(s) 1618
Ksp22I TGATCA 1 cut(s) 742
KspAI GTTAAC 2 cut(s) 1959, 2358
LmnI GCTCC 6 cut(s) 587, 651, 784, 1291, 1695, 2783
LweI GCATC 7 cut(s) 76, 1057, 1273, 1714, 2031, 2877, 2977
MaeII ACGT 2 cut(s) 2662, 3237
MaeIII GTNAC 8 cut(s) 20, 196, 520, 1302, 1394, 1817, 1855, 2596
MfeI CAATTG 3 cut(s) 621, 1983, 2265
MflI RGATCY 2 cut(s) 925, 1324
MhlI GDGCHC 6 cut(s) 143, 592, 699, 958, 1498, 2818
MlyI GAGTC 3 cut(s) 122, 1072, 2846
MmeI TCCRAC 3 cut(s) 1194, 2518, 2683
Mph1103I ATGCAT 1 cut(s) 1762
MroI TCCGGA 1 cut(s) 1618
MroXI GAANNNNTTC 2 cut(s) 1760, 2511
MslI CAYNNNNRTG 4 cut(s) 738, 1193, 2006, 2811
MspA1I CMGCKG 2 cut(s) 1532, 3133
MspI CCGG 7 cut(s) 517, 551, 1059, 1619, 1873, 3090, 3313
MspR9I CCNGG 8 cut(s) 518, 533, 656, 777, 782, 1491, 2891, 3314
MunI CAATTG 3 cut(s) 621, 1983, 2265
Mva1269I GAATGC 4 cut(s) 310, 1760, 1762, 2149
MvaI CCWGG 6 cut(s) 533, 656, 777, 782, 1491, 2891
MvnI CGCG 2 cut(s) 1281, 1481
MwoI GCNNNNNNNGC 6 cut(s) 587, 617, 640, 772, 3283, 3353
NciI CCSGG 2 cut(s) 518, 3314
NcoI CCATGG 1 cut(s) 1779
NdeI CATATG 1 cut(s) 1440
NheI GCTAGC 2 cut(s) 259, 2627
NlaIV GGNNCC 9 cut(s) 356, 653, 786, 839, 1487, 1568, 1777, 2125, 2514
NmuCI GTSAC 7 cut(s) 20, 196, 1302, 1394, 1817, 1855, 2596
NsbI TGCGCA 1 cut(s) 1074
NsiI ATGCAT 1 cut(s) 1762
OliI CACNNNNGTG 1 cut(s) 2006
PaeR7I CTCGAG 1 cut(s) 136
PagI TCATGA 5 cut(s) 733, 2167, 2946, 3003, 3288
PasI CCCWGGG 1 cut(s) 1490
PctI GAATGC 4 cut(s) 310, 1760, 1762, 2149
PdmI GAANNNNTTC 2 cut(s) 1760, 2511
PflFI GACNNNGTC 1 cut(s) 18
PflMI CCANNNNNTGG 3 cut(s) 350, 368, 2303
PfoI TCCNGGA 1 cut(s) 3312
PinAI ACCGGT 1 cut(s) 550
PleI GAGTC 3 cut(s) 121, 1072, 2846
PpsI GAGTC 3 cut(s) 121, 1072, 2846
PpuMI RGGWCCY 1 cut(s) 898
PshAI GACNNNNGTC 1 cut(s) 2121
PsiI TTATAA 1 cut(s) 2259
Psp124BI GAGCTC 3 cut(s) 143, 592, 699
Psp1406I AACGTT 1 cut(s) 2662
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 6 cut(s) 531, 654, 775, 780, 1489, 2889
PspFI CCCAGC 2 cut(s) 167, 3133
PspGI CCWGG 6 cut(s) 531, 654, 775, 780, 1489, 2889
PspN4I GGNNCC 9 cut(s) 356, 653, 786, 839, 1487, 1568, 1777, 2125, 2514
PspPPI RGGWCCY 1 cut(s) 898
PspXI VCTCGAGB 1 cut(s) 136
PstI CTGCAG 1 cut(s) 1588
PstNI CAGNNNCTG 2 cut(s) 167, 2600
PsuI RGATCY 2 cut(s) 925, 1324
PsyI GACNNNGTC 1 cut(s) 18
PvuII CAGCTG 2 cut(s) 1532, 3133
RsaI GTAC 8 cut(s) 1249, 1462, 2271, 2546, 2773, 3156, 3303, 3308
RsaNI GTAC 8 cut(s) 1248, 1461, 2270, 2545, 2772, 3155, 3302, 3307
RseI CAYNNNNRTG 4 cut(s) 738, 1193, 2006, 2811
SacI GAGCTC 3 cut(s) 143, 592, 699
SchI GAGTC 3 cut(s) 122, 1072, 2846
ScrFI CCNGG 8 cut(s) 518, 533, 656, 777, 782, 1491, 2891, 3314
SduI GDGCHC 6 cut(s) 143, 592, 699, 958, 1498, 2818
SfaNI GCATC 7 cut(s) 76, 1057, 1273, 1714, 2031, 2877, 2977
SfcI CTRYAG 4 cut(s) 81, 507, 1584, 3105
Sfr274I CTCGAG 1 cut(s) 136
SinI GGWCC 7 cut(s) 355, 859, 898, 1061, 1870, 2123, 2887
SlaI CTCGAG 1 cut(s) 136
SmiMI CAYNNNNRTG 4 cut(s) 738, 1193, 2006, 2811
SmlI CTYRAG 4 cut(s) 136, 825, 1176, 2438
SmoI CTYRAG 4 cut(s) 136, 825, 1176, 2438
SsiI CCGC 2 cut(s) 1481, 2679
SspI AATATT 2 cut(s) 1318, 2301
SstI GAGCTC 3 cut(s) 143, 592, 699
StyD4I CCNGG 8 cut(s) 516, 531, 654, 775, 780, 1489, 2889, 3312
StyI CCWWGG 5 cut(s) 182, 1130, 1548, 1703, 1779
TaiI ACGT 2 cut(s) 2665, 3240
TaqI TCGA 4 cut(s) 137, 2088, 2533, 2766
TatI WGTACW 4 cut(s) 1460, 2269, 2544, 3301
TseFI GTSAC 7 cut(s) 20, 196, 1302, 1394, 1817, 1855, 2596
Tsp45I GTSAC 7 cut(s) 20, 196, 1302, 1394, 1817, 1855, 2596
TspGWI ACGGA 1 cut(s) 851
Tth111I GACNNNGTC 1 cut(s) 18
Van91I CCANNNNNTGG 3 cut(s) 350, 368, 2303
VpaK11BI GGWCC 7 cut(s) 355, 859, 898, 1061, 1870, 2123, 2887
XapI RAATTY 5 cut(s) 728, 994, 1947, 1993, 2315
XcmI CCANNNNNNNNNTGG 2 cut(s) 365, 2207
XhoI CTCGAG 1 cut(s) 136
XmaJI CCTAGG 1 cut(s) 182
XmnI GAANNNNTTC 2 cut(s) 1760, 2511
Zsp2I ATGCAT 1 cut(s) 1762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.