RchiOBHm_Chr3g0461071

Wound-induced protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016874
Physical Location & Seq
Forward (+)
9144438 .. 9145274
837 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 615 bp
ATGAGCTCAAATATTCAGAGAAGGGGTTCTTCTTCTTCTTCTTCTTCTTCTTCTCGGAAGCAAAGAAGAAGGTCTCGCCCTAGAAGCCTTAATCCACTCAACATTAACGTTGCTGAAGCTAGGAGACAGGTTTACCATGCCTTGATCCTCCACAGAACATCATCAAAGTCATCATTTCAATCTTCTTCATCCTCATCATCCTCGCATGATGTTGTCAGTGGTACTTCTACGCAGCTATTGCAGTCGATGCCTCTGCCGGAGCCAGTTTGGTCAACCACGGCGCCTTCGGTGCCGCCTCATGTGCCATATTCTGGGGGACCAGCCATGGAAGCAGCAGACATTGAATTTGAGTGGGGAGAGAACCAAGCTTCTTCCTATACTTGGTGGTTGGCTTTTTTGAAGACTTTAGATGGTAATAATAGCACTACTAGTACTGTTCCTCAAGAGTTTAAGTACCCACTGGCATTGGGGAGTTCTAATTTGTTTTTTGGCCGGAGGCCTGGTGGTAATTTTAAAGTCGAAGAGGCAGATGAGCAGATCCCTTCACCAGATGAATGGTTGATAATTCCAACCACAGAAAATCATGAAGGTGAGTTTAATCATGTAATTCCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
WI12

Protein Analysis

204

Amino Acids

22.52

Weight (kDa)

6.6

Isoelectric Point (pI)

80.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016874)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g10310
malus_domestica MD04G1168500.v1.1 MD12G1182100.v1.1
prunus_persica Prupe.6G286800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0461071
rosa_laevigata RLG00000024954
rosa_multiflora Rmu_sc0001521.1_g000061 Rmu_sc0009375.1_g000005
rosa_roxburghii Rroxscaffold_6G00418880
rosa_rugosa Rorug03G0048100
rosa_samantha Rh3AG105500 Rh3BG109500 Rh3CG111100 Rh3DG111200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 280, 289
AccB7I CCANNNNNTGG 1 cut(s) 311
AciI CCGC 1 cut(s) 293
AclI AACGTT 1 cut(s) 108
AclWI GGATC 2 cut(s) 139, 532
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 135
AcyI GRCGYC 1 cut(s) 281
AfaI GTAC 3 cut(s) 223, 433, 455
AfiI CCNNNNNNNGG 2 cut(s) 311, 381
AgsI TTSAA 3 cut(s) 179, 344, 400
AhlI ACTAGT 1 cut(s) 428
AjnI CCWGG 1 cut(s) 499
AluBI AGCT 4 cut(s) 6, 119, 235, 368
AluI AGCT 4 cut(s) 6, 119, 235, 368
Alw21I GWGCWC 1 cut(s) 8
Alw26I GTCTC 2 cut(s) 78, 118
AlwI GGATC 2 cut(s) 139, 532
AoxI GGCC 2 cut(s) 490, 497
ApeKI GCWGC 2 cut(s) 232, 332
ApoI RAATTY 1 cut(s) 344
ArsI GACNNNNNNTTYG 2 cut(s) 329, 361
Asp700I GAANNNNTTC 1 cut(s) 25
AspLEI GCGC 1 cut(s) 283
AspS9I GGNCC 1 cut(s) 317
AsuHPI GGTGA 2 cut(s) 537, 602
AvaII GGWCC 1 cut(s) 317
BanI GGYRCC 2 cut(s) 280, 289
BanII GRGCYC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 8
BbvI GCAGC 2 cut(s) 244, 344
BccI CCATC 1 cut(s) 404
BceAI ACGGC 1 cut(s) 294
BcgI CGANNNNNNTGC 2 cut(s) 235, 269
BciT130I CCWGG 1 cut(s) 501
BcoDI GTCTC 2 cut(s) 78, 118
BcuI ACTAGT 1 cut(s) 428
BfaI CTAG 3 cut(s) 81, 120, 429
BfoI RGCGCY 1 cut(s) 284
BisI GCNGC 3 cut(s) 233, 293, 333
BlsI GCNGC 3 cut(s) 234, 294, 334
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 1 cut(s) 501
Bme18I GGWCC 1 cut(s) 317
BmgT120I GGNCC 1 cut(s) 317
BmiI GGNNCC 4 cut(s) 261, 282, 291, 318
BmrFI CCNGG 1 cut(s) 501
BmsI GCATC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 407
BpuEI CTTGAG 1 cut(s) 426
BsaHI GRCGYC 1 cut(s) 281
BsaI GGTCTC 1 cut(s) 78
BsaJI CCNNGG 2 cut(s) 276, 324
BsaXI ACNNNNNCTCC 2 cut(s) 487, 517
Bsc4I CCNNNNNNNGG 2 cut(s) 311, 381
Bse1I ACTGG 2 cut(s) 263, 465
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 2 cut(s) 276, 324
BseGI GGATG 2 cut(s) 188, 197
BseLI CCNNNNNNNGG 2 cut(s) 311, 381
BseNI ACTGG 2 cut(s) 263, 465
BseXI GCAGC 2 cut(s) 244, 344
BshFI GGCC 2 cut(s) 492, 499
BshNI GGYRCC 2 cut(s) 280, 289
BsiHKAI GWGCWC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 257, 493
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 2 cut(s) 311, 381
BsmAI GTCTC 2 cut(s) 78, 118
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 2 cut(s) 492, 499
Bso31I GGTCTC 1 cut(s) 78
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 2 cut(s) 144, 537
Bsp19I CCATGG 1 cut(s) 324
BspACI CCGC 1 cut(s) 293
BspANI GGCC 2 cut(s) 492, 499
BspHI TCATGA 1 cut(s) 583
BspLI GGNNCC 4 cut(s) 261, 282, 291, 318
BspPI GGATC 2 cut(s) 139, 532
BspT107I GGYRCC 2 cut(s) 280, 289
BspTNI GGTCTC 1 cut(s) 78
BsrI ACTGG 2 cut(s) 263, 465
BssECI CCNNGG 2 cut(s) 276, 324
BssMI GATC 2 cut(s) 144, 537
BssNI GRCGYC 1 cut(s) 281
BssT1I CCWWGG 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 1 cut(s) 516
BstACI GRCGYC 1 cut(s) 281
BstAPI GCANNNNNTGC 2 cut(s) 238, 247
BstDSI CCRYGG 2 cut(s) 276, 324
BstF5I GGATG 2 cut(s) 188, 197
BstH2I RGCGCY 1 cut(s) 284
BstHHI GCGC 1 cut(s) 283
BstKTI GATC 2 cut(s) 147, 540
BstMAI GTCTC 2 cut(s) 78, 118
BstMBI GATC 2 cut(s) 144, 537
BstMWI GCNNNNNNNGC 6 cut(s) 84, 238, 247, 289, 301, 329
BstNI CCWGG 1 cut(s) 501
BstSCI CCNGG 1 cut(s) 499
BstV1I GCAGC 2 cut(s) 244, 344
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 1 cut(s) 537
BstXI CCANNNNNNTGG 1 cut(s) 555
BstYI RGATCY 1 cut(s) 537
BsuRI GGCC 2 cut(s) 492, 499
BtgI CCRYGG 2 cut(s) 276, 324
BtsCI GGATG 2 cut(s) 188, 197
BtsIMutI CAGTG 2 cut(s) 223, 458
CciI TCATGA 1 cut(s) 583
CfoI GCGC 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 317
Csp6I GTAC 3 cut(s) 222, 432, 454
CspCI CAANNNNNGTGG 2 cut(s) 447, 482
CviAII CATG 6 cut(s) 137, 206, 299, 325, 584, 602
CviQI GTAC 3 cut(s) 222, 432, 454
DinI GGCGCC 1 cut(s) 282
DpnI GATC 2 cut(s) 146, 539
DpnII GATC 2 cut(s) 144, 537
DraI TTTAAA 1 cut(s) 514
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Ecl136II GAGCTC 1 cut(s) 6
Eco130I CCWWGG 1 cut(s) 324
Eco147I AGGCCT 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 8
Eco31I GGTCTC 1 cut(s) 78
Eco47I GGWCC 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 6
Eco57I CTGAAG 1 cut(s) 135
EcoICRI GAGCTC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 499
EcoT14I CCWWGG 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 8
EgeI GGCGCC 1 cut(s) 282
EheI GGCGCC 1 cut(s) 282
ErhI CCWWGG 1 cut(s) 324
FaeI CATG 6 cut(s) 140, 209, 302, 328, 587, 605
FaiI YATR 8 cut(s) 138, 207, 300, 307, 326, 378, 585, 603
FalI AAGNNNNNCTT 2 cut(s) 13, 45
FaqI GGGAC 1 cut(s) 330
FatI CATG 6 cut(s) 136, 205, 298, 324, 583, 601
Fnu4HI GCNGC 3 cut(s) 233, 293, 333
FokI GGATG 2 cut(s) 175, 184
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 3 cut(s) 233, 293, 333
FspBI CTAG 3 cut(s) 81, 120, 429
GlaI GCGC 1 cut(s) 282
GluI GCNGC 3 cut(s) 233, 293, 333
HaeII RGCGCY 1 cut(s) 284
HaeIII GGCC 2 cut(s) 492, 499
HapII CCGG 2 cut(s) 257, 493
HhaI GCGC 1 cut(s) 283
Hin1I GRCGYC 1 cut(s) 281
Hin1II CATG 6 cut(s) 140, 209, 302, 328, 587, 605
Hin6I GCGC 1 cut(s) 281
HinP1I GCGC 1 cut(s) 281
HincII GTYRAC 1 cut(s) 273
HindII GTYRAC 1 cut(s) 273
HindIII AAGCTT 1 cut(s) 366
HpaII CCGG 2 cut(s) 257, 493
HphI GGTGA 2 cut(s) 537, 602
Hpy166II GTNNAC 2 cut(s) 133, 273
Hpy188I TCNGA 2 cut(s) 18, 57
Hpy188III TCNNGA 2 cut(s) 443, 584
Hpy8I GTNNAC 2 cut(s) 133, 273
HpyAV CCTTC 5 cut(s) 15, 63, 294, 552, 581
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 1 cut(s) 241
HpyF10VI GCNNNNNNNGC 6 cut(s) 84, 238, 247, 289, 301, 329
HpySE526I ACGT 1 cut(s) 108
Hsp92I GRCGYC 1 cut(s) 281
Hsp92II CATG 6 cut(s) 140, 209, 302, 328, 587, 605
HspAI GCGC 1 cut(s) 281
KasI GGCGCC 1 cut(s) 280
Kzo9I GATC 2 cut(s) 144, 537
LmnI GCTCC 1 cut(s) 259
Lsp1109I GCAGC 2 cut(s) 244, 344
LweI GCATC 1 cut(s) 237
MaeI CTAG 3 cut(s) 81, 120, 429
MaeII ACGT 1 cut(s) 108
MalI GATC 2 cut(s) 146, 539
MboI GATC 2 cut(s) 144, 537
MflI RGATCY 1 cut(s) 537
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 5 cut(s) 344, 478, 508, 564, 606
Mly113I GGCGCC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 593
MnlI CCTC 8 cut(s) 158, 202, 211, 261, 306, 450, 489, 517
MroXI GAANNNNTTC 1 cut(s) 25
MseI TTAA 5 cut(s) 90, 105, 450, 513, 597
MslI CAYNNNNRTG 1 cut(s) 588
MspI CCGG 2 cut(s) 257, 493
MspR9I CCNGG 1 cut(s) 501
MvaI CCWGG 1 cut(s) 501
MwoI GCNNNNNNNGC 6 cut(s) 84, 238, 247, 289, 301, 329
NarI GGCGCC 1 cut(s) 281
NcoI CCATGG 1 cut(s) 324
NdeII GATC 2 cut(s) 144, 537
NlaIII CATG 6 cut(s) 140, 209, 302, 328, 587, 605
NlaIV GGNNCC 4 cut(s) 261, 282, 291, 318
PagI TCATGA 1 cut(s) 583
PceI AGGCCT 1 cut(s) 499
PdmI GAANNNNTTC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 311
PkrI GCNGC 3 cut(s) 234, 294, 334
PluTI GGCGCC 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 8
Psp1406I AACGTT 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 4 cut(s) 261, 282, 291, 318
PspPI GGNCC 1 cut(s) 317
PsuI RGATCY 1 cut(s) 537
RsaI GTAC 3 cut(s) 223, 433, 455
RsaNI GTAC 3 cut(s) 222, 432, 454
RseI CAYNNNNRTG 1 cut(s) 588
SacI GAGCTC 1 cut(s) 8
SaqAI TTAA 5 cut(s) 90, 105, 450, 513, 597
SatI GCNGC 3 cut(s) 233, 293, 333
Sau3AI GATC 2 cut(s) 144, 537
Sau96I GGNCC 1 cut(s) 317
ScaI AGTACT 1 cut(s) 433
ScrFI CCNGG 1 cut(s) 501
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 8, 74, 111, 121, 132, 237, 370, 592
SfaNI GCATC 1 cut(s) 237
SfoI GGCGCC 1 cut(s) 282
SinI GGWCC 1 cut(s) 317
SmiMI CAYNNNNRTG 1 cut(s) 588
SmlI CTYRAG 1 cut(s) 441
SmoI CTYRAG 1 cut(s) 441
SpeI ACTAGT 1 cut(s) 428
Sse9I AATT 5 cut(s) 344, 478, 508, 564, 606
SseBI AGGCCT 1 cut(s) 499
SsiI CCGC 1 cut(s) 293
SspDI GGCGCC 1 cut(s) 280
SspI AATATT 1 cut(s) 13
SspMI CTAG 3 cut(s) 81, 120, 429
SstI GAGCTC 1 cut(s) 8
StuI AGGCCT 1 cut(s) 499
StyD4I CCNGG 1 cut(s) 499
StyI CCWWGG 1 cut(s) 324
TaaI ACNGT 1 cut(s) 436
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 245, 519
TasI AATT 5 cut(s) 344, 478, 508, 564, 606
TatI WGTACW 1 cut(s) 431
TauI GCSGC 1 cut(s) 295
Tru1I TTAA 5 cut(s) 90, 105, 450, 513, 597
Tru9I TTAA 5 cut(s) 90, 105, 450, 513, 597
TscAI CASTG 2 cut(s) 223, 465
TseI GCWGC 2 cut(s) 232, 332
TspDTI ATGAA 3 cut(s) 177, 567, 600
TspRI CASTG 2 cut(s) 223, 465
Van91I CCANNNNNTGG 1 cut(s) 311
VpaK11BI GGWCC 1 cut(s) 317
XapI RAATTY 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 25
XspI CTAG 3 cut(s) 81, 120, 429
ZrmI AGTACT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.