Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007838

Physical Location & Seq

Genomic Coordinates Forward (+)

9338292 .. 9343091

Gene Structure 4800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1953 bp

ATGATAGTGGCCACGTCAGCGTCGTCGTCGTCGTCTTCGGCCAGTGTGGCGGTGGACAAGGCGACGAGCGATCTTCTGATAAACCCTGATTGGACGATGAACATCGATATCTGTGATTCCGTCAATTCTCATCAGTGGCAGGCAAAAGATGTCGTAAAAGCTGTAAAAAGAAGGTTGCAGCATAAGAACCCCAAAGTTCAATTCCTTGCTTTGACGCTATTGGAGACAATGGTGAAGAATTGTGGTGATTATATCCATTTTCAAATTGCAGAGAGGAATATTTTGGGAGAGATGATAAAAATTGTGAGGAAGAAGTCAGATATGCAGGTAAGGGATAAGATTTTGATATTGGTGGACTCTTGGCAAGCAGCTTTTGGTGGGCCTTCAGGAAAGCATCCTCAGTACTATTGGGCATATGATGAGCTAAGGCGGTCTGGAGTAGAGTTTCCTAAGCATTCCTTAGATGCAGCTCCAATGTTTGCACCACCTGTTGCAAATTCAGTACCAAGACCTTCTCAAGCTGGATATGGAATGCCTAGCAATTCCTCAAGGCGGCTTGATGAGACAATGGCTACAGAAAACGAAAATTTAACTTTGACAAGCCTGGATTCTATGAGGGATGTTATGGAGCTCTTGAGTGACATGCTGCAAGCTGTGAACCCTAATGACCGATTGGGTGTAAAAGATGAAGTCATAGTTGAACTTGTCAACCAGTGTCGTGCCAACCAGAAAAAGCTGATTCATATGCTAACTACAACCGGAGATGAAGAACTTCTTGGACGGGGTCTCGAATTAAACGACAGTCTGCAAAGTTTGCTTGCAAAGCATGATGCTATAGCTTCTGGTTTACCTTTGCCAACTGCAAACTTTAGTCCTCAATCAGCTGAAATGCCCGCATCCAGTTCCAAGCATACTGAAGCAAAAGACTCCAGCATAAGTGACTCCAGTCCAAGACCTAAGGCCAGTCCCTCTGCACCAGTTGTTACCACGTCAAGGGTCCAAATTGATGAAGATGAAGAAGAGGAAGATGAATTTGCACAGCTAGCTCGAAGGCATTCCAAACAAAGTACCTCCAAGCCTACTGAAAGCACACCTAATGGTACCAGTGAAGGTTTGGCATTGGTAAGCGTAGATCCGTCTCAGTCTGCATCAGTGGCAACATCTGTCCCAAACAACGCGTTAGTTCTGTCTGATCCACCTGCTTCAAGTAAGACTACACAAGAGCAGAACATAATTGACCTACTGAGTATCACTTTGTCGACAACAGCAATCTCCAGTGACACCTCTCCTCCTCCTCCTCCTCCTCCTCCAACATCTGTCCCTCCCCCACTTCCGGCATCTAACGGTAATGTTCATCAGATACCGGCTTCCCCCGCTATACAAGGCAATCCCTATCCTTCCCAAGCTTATCCTGGAAATCCTGGGCTTGGATCCTACAACAGCTATGTTGTTCCTTGGGCACAACCTCAGGCCCAACAACCTCAATTCAGGCCACAATTACAGCCACAGCAACAGCAGCTACCTCAATTCCAGTCGCAGTTTCAACCTCAATATCCCCAATACTCTTCTGCCTACCCTCCTCCACCATGGGCATCTTCTCCTGGTTATGCTAACAACCAAAATCATGTGTCCGCCAATAGTACGTATGCGGCTCCTCACACCAACACAACGGCTTACATGCCAGCGCAAGGAGCAAGGCCTTTGCAGCAGTATAATTCGTTCTCCGCGAGAGGAACCACTGGGTCAGATAACAACGGAGGTTTCCCAACAAATCCTGGTCCTAGGAGCCCTGGACCTGCTGCAGGACAAAAGCCCTTCATTCCCTCGTACAGATTATTTGAAGATCTGAATGTTTTTGGCAATGCTGATGGAAAGCTTAAGGTGGCGAACAGCAACCCATCATCTGGCTTCTCTGGAACTCCAGGCCAAGGTATGGTGGGTGGGAGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005886 GO:0006508 GO:0006511 GO:0006807 GO:0006810 GO:0006886 GO:0007034 GO:0007088 GO:0007154 GO:0007165 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010564 GO:0010639 GO:0010948 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016192 GO:0016197 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0019941 GO:0023052 GO:0030163 GO:0030276 GO:0031410 GO:0031982 GO:0032182 GO:0032509 GO:0032511 GO:0033036 GO:0033043 GO:0033365 GO:0034613 GO:0042886 GO:0043130 GO:0043162 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043328 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045184 GO:0045324 GO:0045786 GO:0045839 GO:0045930 GO:0046907 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051179 GO:0051234 GO:0051603 GO:0051641 GO:0051649 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0065007 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071944 GO:0071985 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GAT VHS

Protein Analysis

650

Amino Acids

69.95

Weight (kDa)

5.88

Isoelectric Point (pI)

57.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VHS	PF00790	10 - 130	7e-33	VHS domain
GAT	PF03127	208 - 282	8.8e-19	GAT domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007838)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38410
fragaria_vesca	FvH4_6g10390 FvH4_6g10390 FvH4_6g10390 FvH4_6g10390 FvH4_6g10390
malus_domestica	MD04G1169500.v1.1 MD12G1183500.v1.1
prunus_persica	Prupe.6G288000_v2.0.a1 Prupe.6G288000_v2.0.a1
pyrus_communis	pycom04g15020 pycom04g15030 pycom12g17210
rosa_chinensis	RchiOBHm_Chr3g0461281
rosa_laevigata	RLG00000024944
rosa_multiflora	Rmu_ssc0000326.1_g000008
rosa_roxburghii	Rroxscaffold_6G00418440 Rroxscaffold_6G00418730
rosa_rugosa	Rorug03G0049400
rosa_samantha	Rh3AG106700 Rh3BG110900 Rh3CG112800 Rh3DG112900
rosa_wichuraiana	Rw3G009140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1207
Acc36I	ACCTGC	3 cut(s)	316, 1207, 1804
Acc65I	GGTACC	1 cut(s)	1100
AccB1I	GGYRCC	1 cut(s)	1100
AccB7I	CCANNNNNTGG	2 cut(s)	1904, 1933
AccI	GTMKAC	1 cut(s)	1259
AccII	CGCG	2 cut(s)	1178, 1727
AciI	CCGC	8 cut(s)	50, 430, 553, 894, 1374, 1632, 1649, 1725
AclWI	GGATC	4 cut(s)	1127, 1187, 1425, 1438
AcoI	YGGCCR	2 cut(s)	9, 39
AcsI	RAATTY	3 cut(s)	496, 586, 1031
AcuI	CTGAAG	2 cut(s)	369, 936
AfaI	GTAC	6 cut(s)	404, 504, 1069, 1102, 1642, 1829
AfiI	CCNNNNNNNGG	9 cut(s)	552, 993, 1333, 1427, 1688, 1802, 1904, 1928, 1933
AflII	CTTAAG	1 cut(s)	1877
AflIII	ACRYGT	1 cut(s)	1176
AgsI	TTSAA	6 cut(s)	200, 263, 701, 1206, 1544, 1841
AjiI	CACGTC	2 cut(s)	15, 990
AjnI	CCWGG	7 cut(s)	603, 1411, 1420, 1600, 1774, 1789, 1921
AjuI	GAANNNNNNNTTGG	4 cut(s)	185, 217, 759, 791
Alw21I	GWGCWC	1 cut(s)	633
Alw26I	GTCTC	4 cut(s)	218, 557, 791, 1143
AlwI	GGATC	4 cut(s)	1127, 1187, 1425, 1438
AoxI	GGCC	8 cut(s)	9, 39, 380, 960, 1470, 1490, 1697, 1924
ApeKI	GCWGC	7 cut(s)	178, 368, 467, 646, 1516, 1705, 1799
ApoI	RAATTY	3 cut(s)	496, 586, 1031
Asp700I	GAANNNNTTC	2 cut(s)	771, 1054
Asp718I	GGTACC	1 cut(s)	1100
AspA2I	CCTAGG	1 cut(s)	1781
AspLEI	GCGC	1 cut(s)	1687
AspS9I	GGNCC	5 cut(s)	380, 997, 1471, 1778, 1793
AsuHPI	GGTGA	2 cut(s)	244, 257
AsuNHI	GCTAGC	1 cut(s)	1042
AvaII	GGWCC	3 cut(s)	997, 1778, 1793
AvrII	CCTAGG	1 cut(s)	1781
AxyI	CCTNAGG	2 cut(s)	957, 1467
BaeGI	GKGCMC	1 cut(s)	1462
BalI	TGGCCA	1 cut(s)	11
BamHI	GGATCC	1 cut(s)	1430
BanI	GGYRCC	1 cut(s)	1100
BanII	GRGCYC	2 cut(s)	633, 1790
BbsI	GAAGAC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	633
BbvI	GCAGC	7 cut(s)	190, 380, 479, 633, 1528, 1717, 1786
BccI	CCATC	2 cut(s)	1862, 1906
BceAI	ACGGC	1 cut(s)	1686
BciT130I	CCWGG	7 cut(s)	605, 1413, 1422, 1602, 1776, 1791, 1923
BcoDI	GTCTC	4 cut(s)	218, 557, 791, 1143
BfaI	CTAG	3 cut(s)	537, 1043, 1782
BfmI	CTRYAG	3 cut(s)	573, 834, 1800
BfrI	CTTAAG	1 cut(s)	1877
BfuAI	ACCTGC	3 cut(s)	316, 1207, 1804
BglI	GCCNNNNNGGC	1 cut(s)	47
BglII	AGATCT	1 cut(s)	1843
BisI	GCNGC	9 cut(s)	179, 369, 468, 554, 647, 1517, 1650, 1706, 1800
BlnI	CCTAGG	1 cut(s)	1781
BlsI	GCNGC	9 cut(s)	180, 370, 469, 555, 648, 1518, 1651, 1707, 1801
BmcAI	AGTACT	1 cut(s)	404
Bme1390I	CCNGG	7 cut(s)	605, 1413, 1422, 1602, 1776, 1791, 1923
Bme18I	GGWCC	3 cut(s)	997, 1778, 1793
BmgBI	CACGTC	2 cut(s)	15, 990
BmgT120I	GGNCC	5 cut(s)	380, 997, 1471, 1778, 1793
BmiI	GGNNCC	6 cut(s)	998, 1102, 1432, 1653, 1735, 1787
BmrFI	CCNGG	7 cut(s)	605, 1413, 1422, 1602, 1776, 1791, 1923
BmrI	ACTGGG	1 cut(s)	1749
BmsI	GCATC	7 cut(s)	403, 454, 820, 905, 1157, 1346, 1601
BmtI	GCTAGC	1 cut(s)	1046
BmuI	ACTGGG	1 cut(s)	1749
BoxI	GACNNNNGTC	1 cut(s)	945
BpiI	GAAGAC	1 cut(s)	27
BpmI	CTGGAG	5 cut(s)	456, 913, 928, 1258, 1905
Bpu10I	CCTNAGC	2 cut(s)	425, 450
BpuEI	CTTGAG	3 cut(s)	501, 532, 655
Bsa29I	ATCGAT	1 cut(s)	105
BsaAI	YACGTR	1 cut(s)	1644
BsaBI	GATNNNNATC	1 cut(s)	101
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	6 cut(s)	1421, 1454, 1586, 1781, 1789, 1927
BsaWI	WCCGGW	1 cut(s)	758
BsaXI	ACNNNNNCTCC	2 cut(s)	1273, 1303
Bsc4I	CCNNNNNNNGG	9 cut(s)	552, 993, 1333, 1427, 1688, 1802, 1904, 1928, 1933
Bse118I	RCCGGY	1 cut(s)	1363
Bse21I	CCTNAGG	2 cut(s)	957, 1467
Bse3DI	GCAATG	1 cut(s)	1867
Bse8I	GATNNNNATC	1 cut(s)	101
BseBI	CCWGG	7 cut(s)	605, 1413, 1422, 1602, 1776, 1791, 1923
BseCI	ATCGAT	1 cut(s)	105
BseDI	CCNNGG	6 cut(s)	1421, 1454, 1586, 1781, 1789, 1927
BseGI	GGATG	3 cut(s)	394, 625, 896
BseJI	GATNNNNATC	1 cut(s)	101
BseLI	CCNNNNNNNGG	9 cut(s)	552, 993, 1333, 1427, 1688, 1802, 1904, 1928, 1933
BseMI	GCAATG	1 cut(s)	1867
BseMII	CTCAG	4 cut(s)	413, 1154, 1235, 1481
BseRI	GAGGAG	9 cut(s)	1278, 1281, 1284, 1287, 1290, 1293, 1296, 1569, 1644
BseSI	GKGCMC	1 cut(s)	1462
BseXI	GCAGC	7 cut(s)	190, 380, 479, 633, 1528, 1717, 1786
BsgI	GTGCAG	1 cut(s)	957
Bsh1236I	CGCG	2 cut(s)	1178, 1727
BshFI	GGCC	8 cut(s)	11, 41, 382, 962, 1472, 1492, 1699, 1926
BshNI	GGYRCC	1 cut(s)	1100
BshVI	ATCGAT	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	633
BsiSI	CCGG	3 cut(s)	759, 1334, 1364
BslFI	GGGAC	3 cut(s)	951, 1151, 1304
BslI	CCNNNNNNNGG	9 cut(s)	552, 993, 1333, 1427, 1688, 1802, 1904, 1928, 1933
BsmAI	GTCTC	4 cut(s)	218, 557, 791, 1143
BsmBI	CGTCTC	1 cut(s)	1143
BsmFI	GGGAC	3 cut(s)	951, 1151, 1304
BsmI	GAATGC	3 cut(s)	454, 537, 1054
BsnI	GGCC	8 cut(s)	11, 41, 382, 962, 1472, 1492, 1699, 1926
Bso31I	GGTCTC	1 cut(s)	791
Bsp1286I	GDGCHC	3 cut(s)	633, 1462, 1790
Bsp143I	GATC	5 cut(s)	70, 1132, 1192, 1430, 1843
Bsp19I	CCATGG	1 cut(s)	1586
BspACI	CCGC	8 cut(s)	50, 430, 553, 894, 1374, 1632, 1649, 1725
BspANI	GGCC	8 cut(s)	11, 41, 382, 962, 1472, 1492, 1699, 1926
BspCNI	CTCAG	4 cut(s)	412, 1153, 1236, 1480
BspDI	ATCGAT	1 cut(s)	105
BspFNI	CGCG	2 cut(s)	1178, 1727
BspLI	GGNNCC	6 cut(s)	998, 1102, 1432, 1653, 1735, 1787
BspMAI	CTGCAG	1 cut(s)	1804
BspMI	ACCTGC	3 cut(s)	316, 1207, 1804
BspOI	GCTAGC	1 cut(s)	1046
BspPI	GGATC	4 cut(s)	1127, 1187, 1425, 1438
BspT107I	GGYRCC	1 cut(s)	1100
BspTI	CTTAAG	1 cut(s)	1877
BspTNI	GGTCTC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	1867
BsrFI	RCCGGY	1 cut(s)	1363
BssAI	RCCGGY	1 cut(s)	1363
BssECI	CCNNGG	6 cut(s)	1421, 1454, 1586, 1781, 1789, 1927
BssMI	GATC	5 cut(s)	70, 1132, 1192, 1430, 1843
BssT1I	CCWWGG	4 cut(s)	1454, 1586, 1781, 1927
Bst2UI	CCWGG	7 cut(s)	605, 1413, 1422, 1602, 1776, 1791, 1923
Bst4CI	ACNGT	2 cut(s)	803, 1346
Bst6I	CTCTTC	2 cut(s)	1014, 1570
BstAFI	CTTAAG	1 cut(s)	1877
BstAPI	GCANNNNNTGC	1 cut(s)	814
BstBAI	YACGTR	1 cut(s)	1644
BstC8I	GCNNGC	7 cut(s)	141, 366, 651, 819, 894, 1044, 1683
BstDEI	CTNAG	8 cut(s)	399, 425, 450, 460, 957, 1140, 1244, 1467
BstDSI	CCRYGG	1 cut(s)	1586
BstENI	CCTNNNNNAGG	1 cut(s)	1800
BstF5I	GGATG	3 cut(s)	394, 625, 896
BstFNI	CGCG	2 cut(s)	1178, 1727
BstHHI	GCGC	1 cut(s)	1687
BstKTI	GATC	5 cut(s)	73, 1135, 1195, 1433, 1846
BstMAI	GTCTC	4 cut(s)	218, 557, 791, 1143
BstMBI	GATC	5 cut(s)	70, 1132, 1192, 1430, 1843
BstNI	CCWGG	7 cut(s)	605, 1413, 1422, 1602, 1776, 1791, 1923
BstNSI	RCATGY	2 cut(s)	646, 1681
BstPAI	GACNNNNGTC	1 cut(s)	945
BstSCI	CCNGG	7 cut(s)	603, 1411, 1420, 1600, 1774, 1789, 1921
BstSFI	CTRYAG	3 cut(s)	573, 834, 1800
BstSLI	GKGCMC	1 cut(s)	1462
BstSNI	TACGTA	1 cut(s)	1644
BstUI	CGCG	2 cut(s)	1178, 1727
BstV1I	GCAGC	7 cut(s)	190, 380, 479, 633, 1528, 1717, 1786
BstV2I	GAAGAC	1 cut(s)	27
BstX2I	RGATCY	3 cut(s)	1132, 1430, 1843
BstYI	RGATCY	3 cut(s)	1132, 1430, 1843
Bsu15I	ATCGAT	1 cut(s)	105
Bsu36I	CCTNAGG	2 cut(s)	957, 1467
BsuRI	GGCC	8 cut(s)	11, 41, 382, 962, 1472, 1492, 1699, 1926
BsuTUI	ATCGAT	1 cut(s)	105
BtgI	CCRYGG	1 cut(s)	1586
BtrI	CACGTC	2 cut(s)	15, 990
BtsCI	GGATG	3 cut(s)	394, 625, 896
BtsIMutI	CAGTG	7 cut(s)	49, 140, 719, 1111, 1158, 1282, 1737
BveI	ACCTGC	3 cut(s)	316, 1207, 1804
Cac8I	GCNNGC	7 cut(s)	141, 366, 651, 819, 894, 1044, 1683
CfoI	GCGC	1 cut(s)	1687
Cfr10I	RCCGGY	1 cut(s)	1363
Cfr13I	GGNCC	5 cut(s)	380, 997, 1471, 1778, 1793
ClaI	ATCGAT	1 cut(s)	105
CseI	GACGC	2 cut(s)	9, 223
Csp6I	GTAC	6 cut(s)	403, 503, 1068, 1101, 1641, 1828
CviAII	CATG	5 cut(s)	643, 827, 1587, 1625, 1678
CviQI	GTAC	6 cut(s)	403, 503, 1068, 1101, 1641, 1828
DdeI	CTNAG	8 cut(s)	399, 425, 450, 460, 957, 1140, 1244, 1467
DpnI	GATC	5 cut(s)	72, 1134, 1194, 1432, 1845
DpnII	GATC	5 cut(s)	70, 1132, 1192, 1430, 1843
EaeI	YGGCCR	2 cut(s)	9, 39
Eam1104I	CTCTTC	2 cut(s)	1014, 1570
EarI	CTCTTC	2 cut(s)	1014, 1570
EciI	GGCGGA	1 cut(s)	1621
Ecl136II	GAGCTC	1 cut(s)	631
Eco105I	TACGTA	1 cut(s)	1644
Eco130I	CCWWGG	4 cut(s)	1454, 1586, 1781, 1927
Eco147I	AGGCCT	1 cut(s)	1699
Eco24I	GRGCYC	2 cut(s)	633, 1790
Eco31I	GGTCTC	1 cut(s)	791
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	3 cut(s)	997, 1778, 1793
Eco53kI	GAGCTC	1 cut(s)	631
Eco57I	CTGAAG	2 cut(s)	369, 936
Eco81I	CCTNAGG	2 cut(s)	957, 1467
EcoICRI	GAGCTC	1 cut(s)	631
EcoNI	CCTNNNNNAGG	1 cut(s)	1800
EcoRII	CCWGG	7 cut(s)	603, 1411, 1420, 1600, 1774, 1789, 1921
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	4 cut(s)	1454, 1586, 1781, 1927
EcoT38I	GRGCYC	2 cut(s)	633, 1790
ErhI	CCWWGG	4 cut(s)	1454, 1586, 1781, 1927
Esp3I	CGTCTC	1 cut(s)	1143
FaeI	CATG	5 cut(s)	646, 830, 1590, 1628, 1681
FalI	AAGNNNNNCTT	4 cut(s)	443, 475, 759, 791
FaqI	GGGAC	3 cut(s)	951, 1151, 1304
FatI	CATG	5 cut(s)	642, 826, 1586, 1624, 1677
FauI	CCCGC	2 cut(s)	901, 1381
FauNDI	CATATG	2 cut(s)	415, 744
FblI	GTMKAC	1 cut(s)	1259
Fnu4HI	GCNGC	9 cut(s)	179, 369, 468, 554, 647, 1517, 1650, 1706, 1800
FokI	GGATG	3 cut(s)	381, 632, 883
FriOI	GRGCYC	2 cut(s)	633, 1790
Fsp4HI	GCNGC	9 cut(s)	179, 369, 468, 554, 647, 1517, 1650, 1706, 1800
FspBI	CTAG	3 cut(s)	537, 1043, 1782
GlaI	GCGC	1 cut(s)	1686
GluI	GCNGC	9 cut(s)	179, 369, 468, 554, 647, 1517, 1650, 1706, 1800
GsuI	CTGGAG	5 cut(s)	456, 913, 928, 1258, 1905
HaeIII	GGCC	8 cut(s)	11, 41, 382, 962, 1472, 1492, 1699, 1926
HapII	CCGG	3 cut(s)	759, 1334, 1364
HgaI	GACGC	2 cut(s)	9, 223
HhaI	GCGC	1 cut(s)	1687
Hin1II	CATG	5 cut(s)	646, 830, 1590, 1628, 1681
Hin6I	GCGC	1 cut(s)	1685
HinP1I	GCGC	1 cut(s)	1685
HincII	GTYRAC	2 cut(s)	709, 1260
HindII	GTYRAC	2 cut(s)	709, 1260
HindIII	AAGCTT	2 cut(s)	1404, 1874
HinfI	GANTC	6 cut(s)	116, 356, 608, 739, 926, 941
HpaII	CCGG	3 cut(s)	759, 1334, 1364
HphI	GGTGA	2 cut(s)	244, 257
Hpy166II	GTNNAC	6 cut(s)	55, 355, 658, 709, 848, 1260
Hpy188I	TCNGA	6 cut(s)	78, 319, 1192, 1359, 1747, 1848
Hpy188III	TCNNGA	5 cut(s)	387, 435, 634, 788, 1914
Hpy8I	GTNNAC	6 cut(s)	55, 355, 658, 709, 848, 1260
Hpy99I	CGWCG	5 cut(s)	25, 28, 31, 34, 67
HpyAV	CCTTC	7 cut(s)	165, 393, 522, 1044, 1103, 1407, 1825
HpyCH4III	ACNGT	2 cut(s)	803, 1346
HpyCH4IV	ACGT	3 cut(s)	14, 989, 1643
HpyF3I	CTNAG	8 cut(s)	399, 425, 450, 460, 957, 1140, 1244, 1467
HpySE526I	ACGT	3 cut(s)	14, 989, 1643
Hsp92II	CATG	5 cut(s)	646, 830, 1590, 1628, 1681
HspAI	GCGC	1 cut(s)	1685
KpnI	GGTACC	1 cut(s)	1104
Kzo9I	GATC	5 cut(s)	70, 1132, 1192, 1430, 1843
LmnI	GCTCC	5 cut(s)	475, 628, 1657, 1691, 1785
Lsp1109I	GCAGC	7 cut(s)	190, 380, 479, 633, 1528, 1717, 1786
LweI	GCATC	7 cut(s)	403, 454, 820, 905, 1157, 1346, 1601
MaeI	CTAG	3 cut(s)	537, 1043, 1782
MaeII	ACGT	3 cut(s)	14, 989, 1643
MaeIII	GTNAC	4 cut(s)	638, 938, 982, 1277
MalI	GATC	5 cut(s)	72, 1134, 1194, 1432, 1845
MboI	GATC	5 cut(s)	70, 1132, 1192, 1430, 1843
MflI	RGATCY	3 cut(s)	1132, 1430, 1843
MhlI	GDGCHC	3 cut(s)	633, 1462, 1790
MlsI	TGGCCA	1 cut(s)	11
MluI	ACGCGT	1 cut(s)	1176
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	3 cut(s)	350, 920, 935
MmeI	TCCRAC	1 cut(s)	1334
Mox20I	TGGCCA	1 cut(s)	11
MroXI	GAANNNNTTC	2 cut(s)	771, 1054
MscI	TGGCCA	1 cut(s)	11
MseI	TTAA	3 cut(s)	590, 794, 1878
Msp20I	TGGCCA	1 cut(s)	11
MspA1I	CMGCKG	1 cut(s)	884
MspCI	CTTAAG	1 cut(s)	1877
MspI	CCGG	3 cut(s)	759, 1334, 1364
MspR9I	CCNGG	7 cut(s)	605, 1413, 1422, 1602, 1776, 1791, 1923
Mva1269I	GAATGC	3 cut(s)	454, 537, 1054
MvaI	CCWGG	7 cut(s)	605, 1413, 1422, 1602, 1776, 1791, 1923
MvnI	CGCG	2 cut(s)	1178, 1727
NcoI	CCATGG	1 cut(s)	1586
NdeI	CATATG	2 cut(s)	415, 744
NdeII	GATC	5 cut(s)	70, 1132, 1192, 1430, 1843
NheI	GCTAGC	1 cut(s)	1042
NlaIII	CATG	5 cut(s)	646, 830, 1590, 1628, 1681
NlaIV	GGNNCC	6 cut(s)	998, 1102, 1432, 1653, 1735, 1787
NmuCI	GTSAC	3 cut(s)	638, 938, 1277
NspI	RCATGY	2 cut(s)	646, 1681
PaqCI	CACCTGC	1 cut(s)	1207
PceI	AGGCCT	1 cut(s)	1699
PcsI	WCGNNNNNNNCGW	4 cut(s)	20, 29, 795, 1724
PctI	GAATGC	3 cut(s)	454, 537, 1054
PdmI	GAANNNNTTC	2 cut(s)	771, 1054
PfeI	GAWTC	3 cut(s)	116, 608, 739
PflFI	GACNNNGTC	1 cut(s)	783
PflMI	CCANNNNNTGG	2 cut(s)	1904, 1933
PfoI	TCCNGGA	1 cut(s)	1411
PkrI	GCNGC	9 cut(s)	180, 370, 469, 555, 648, 1518, 1651, 1707, 1801
PleI	GAGTC	3 cut(s)	350, 920, 935
PpsI	GAGTC	3 cut(s)	350, 920, 935
Ppu21I	YACGTR	1 cut(s)	1644
PshAI	GACNNNNGTC	1 cut(s)	945
Psp124BI	GAGCTC	1 cut(s)	633
Psp6I	CCWGG	7 cut(s)	603, 1411, 1420, 1600, 1774, 1789, 1921
PspGI	CCWGG	7 cut(s)	603, 1411, 1420, 1600, 1774, 1789, 1921
PspN4I	GGNNCC	6 cut(s)	998, 1102, 1432, 1653, 1735, 1787
PspPI	GGNCC	5 cut(s)	380, 997, 1471, 1778, 1793
PsrI	GAACNNNNNNTAC	2 cut(s)	1703, 1735
PstI	CTGCAG	1 cut(s)	1804
PsuI	RGATCY	3 cut(s)	1132, 1430, 1843
PsyI	GACNNNGTC	1 cut(s)	783
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	6 cut(s)	404, 504, 1069, 1102, 1642, 1829
RsaNI	GTAC	6 cut(s)	403, 503, 1068, 1101, 1641, 1828
SacI	GAGCTC	1 cut(s)	633
SalI	GTCGAC	1 cut(s)	1258
SaqAI	TTAA	3 cut(s)	590, 794, 1878
SatI	GCNGC	9 cut(s)	179, 369, 468, 554, 647, 1517, 1650, 1706, 1800
Sau3AI	GATC	5 cut(s)	70, 1132, 1192, 1430, 1843
Sau96I	GGNCC	5 cut(s)	380, 997, 1471, 1778, 1793
ScaI	AGTACT	1 cut(s)	404
SchI	GAGTC	3 cut(s)	350, 920, 935
ScrFI	CCNGG	7 cut(s)	605, 1413, 1422, 1602, 1776, 1791, 1923
SduI	GDGCHC	3 cut(s)	633, 1462, 1790
SfaNI	GCATC	7 cut(s)	403, 454, 820, 905, 1157, 1346, 1601
SfcI	CTRYAG	3 cut(s)	573, 834, 1800
SinI	GGWCC	3 cut(s)	997, 1778, 1793
SmlI	CTYRAG	4 cut(s)	516, 547, 634, 1877
SmoI	CTYRAG	4 cut(s)	516, 547, 634, 1877
SnaBI	TACGTA	1 cut(s)	1644
SseBI	AGGCCT	1 cut(s)	1699
SsiI	CCGC	8 cut(s)	50, 430, 553, 894, 1374, 1632, 1649, 1725
SspI	AATATT	1 cut(s)	280
SspMI	CTAG	3 cut(s)	537, 1043, 1782
SstI	GAGCTC	1 cut(s)	633
StuI	AGGCCT	1 cut(s)	1699
StyD4I	CCNGG	7 cut(s)	603, 1411, 1420, 1600, 1774, 1789, 1921
StyI	CCWWGG	4 cut(s)	1454, 1586, 1781, 1927
TaaI	ACNGT	2 cut(s)	803, 1346
TaiI	ACGT	3 cut(s)	17, 992, 1646
TaqI	TCGA	4 cut(s)	105, 789, 1048, 1259
TaqII	GACCGA	1 cut(s)	684
TatI	WGTACW	1 cut(s)	402
TauI	GCSGC	2 cut(s)	556, 1652
TfiI	GAWTC	3 cut(s)	116, 608, 739
Tru1I	TTAA	3 cut(s)	590, 794, 1878
Tru9I	TTAA	3 cut(s)	590, 794, 1878
TscAI	CASTG	7 cut(s)	49, 140, 719, 1111, 1158, 1282, 1744
TseFI	GTSAC	3 cut(s)	638, 938, 1277
TseI	GCWGC	7 cut(s)	178, 368, 467, 646, 1516, 1705, 1799
Tsp45I	GTSAC	3 cut(s)	638, 938, 1277
TspDTI	ATGAA	9 cut(s)	113, 702, 731, 780, 1023, 1029, 1044, 1343, 1807
TspGWI	ACGGA	3 cut(s)	109, 1125, 1770
TspRI	CASTG	7 cut(s)	49, 140, 719, 1111, 1158, 1282, 1744
Tth111I	GACNNNGTC	1 cut(s)	783
Van91I	CCANNNNNTGG	2 cut(s)	1904, 1933
Vha464I	CTTAAG	1 cut(s)	1877
VpaK11BI	GGWCC	3 cut(s)	997, 1778, 1793
XagI	CCTNNNNNAGG	1 cut(s)	1800
XapI	RAATTY	3 cut(s)	496, 586, 1031
XceI	RCATGY	2 cut(s)	646, 1681
XcmI	CCANNNNNNNNNTGG	3 cut(s)	49, 1111, 1409
XmaJI	CCTAGG	1 cut(s)	1781
XmiI	GTMKAC	1 cut(s)	1259
XmnI	GAANNNNTTC	2 cut(s)	771, 1054
XspI	CTAG	3 cut(s)	537, 1043, 1782
ZrmI	AGTACT	1 cut(s)	404

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.