RchiOBHm_Chr3g0462881

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0011783
Physical Location & Seq
Forward (+)
10400414 .. 10402161
1748 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1239 bp
ATGACCGAGAACTCTAGCTGTTTCAACGGCATCGTACGCCGGCTTTTATGCACCGGCAACGTTCCGACTCACCCGTCATCAGATTACATTCTAGACTCTAACCCAACCCAACTCGTTAAACCACCCAAAACTCCAAACCATGAACCCAAGTTCCAAACTTTTCCTTCGCCTTCGGCTACAGCCACGCCTGGAATAGTAGCCAGGTTAATGGGGCTGGAGTCTCTTCCCGAGACGAACTGGGTGAGAGCCCCGGATTTGGTTACCAGAAGTAAGTCGGTGAGCTTTGCAGATTACTTGATGGATTTTGATTTGACTCCGACTAATCAGCACCGCCGTGTCCGGACCTCCGTCTCTTTCCGGGAGGTTCCGGGGGTTATGAGTCAGCAGGAGAGTCAGGATTTTCTGGTGGTGTATTTGGATAGTGTGGATAAGGGGAAGGAGTTCGGGTCGAAAGTGAAGAAAACAGAGGAAGTGAAACAGGGGAAGGAACAGAGGAGTAAGAACAGGGAGAGTAGTGAGGTGATTAAGAAGAAGAATGAAGAGAAGGTAGTGAAGAAAAATAGCAAGAAGGTTTCGAAGTTGAAAGATGAGCCTAGAAGAGAATGTAGTGCCCAATCTTCGAAGGTTAGTCGTAATTGCAAAGGAGACGAGGGTTTGGGGTACTCTGTTCCTTATAAGAAGGTTGTGAGCAAAAATGGTGGAGCAAATTTAAGTGAAGGTAGTGGGGAACATACTCCACCGAAGAAAACAACGACTCAGAAGAAGAAGAAAGTGGTGCAAGAGCCAAAATGCAAGAAGGGAAAACATCAGAATGAAGCTAAGAAAAGAGTGGCTGTTGACAATAGTTCGTGCTCGGAGAATTCAAGTCCTGTTTCGGTTTTTGATATTGATGACATTTTGATCCAACATGAAACTTGGGTATCAGAATATTCAAGTCCCAAGGATTTGAAATCCCAGATGAAATCTCCACCAAGAGTTTCTTACAATGAAGACCCTGAATTGAGAGCAGTCAAAATCAAAGATATGGAGCCAATTAAGAACGAGGACAGCGGAGATTCCACGGAGCTTTTGGCGACAAAAGTCTTCAGTTTGACAGAAGAAGAATTGAAAGAGTCAAATTGGGTATCAAAGAATGTGGTCGAGTATGAAAGATTCGAAGAAATCTGTGTGGAAGTTGAGGGGCTGATCCTTGACGTGCTATTGAACCAGGCCATTGATGACATTGTGCAACTTTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

412

Amino Acids

46.23

Weight (kDa)

8.45

Isoelectric Point (pI)

45.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 62 - 79 2.2e-07 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01370
fragaria_vesca FvH4_6g11320 FvH4_6g11320
malus_domestica MD04G1154900.v1.1 MD12G1168500.v1.1
prunus_persica Prupe.6G278700_v2.0.a1
pyrus_communis pycom04g13970 pycom12g16000
rosa_chinensis RchiOBHm_Chr3g0462881
rosa_laevigata RLG00000024826
rosa_multiflora Rmu_sc0000766.1_g000014 Rmu_sc0000766.1_g000015
rosa_roxburghii Rroxscaffold_6G00417130
rosa_rugosa Rorug03G0059600
rosa_samantha Rh3AG117900 Rh3BG121700 Rh3CG124600 Rh3DG123300
rosa_wichuraiana Rw3G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 675
AasI GACNNNNNNGTC 1 cut(s) 73
AccIII TCCGGA 1 cut(s) 339
AciI CCGC 2 cut(s) 331, 1050
AclI AACGTT 1 cut(s) 60
AclWI GGATC 2 cut(s) 895, 1180
AcsI RAATTY 2 cut(s) 706, 859
AcuI CTGAAG 1 cut(s) 1069
AfaI GTAC 2 cut(s) 36, 662
AfiI CCNNNNNNNGG 1 cut(s) 256
AgsI TTSAA 7 cut(s) 25, 583, 864, 933, 949, 1108, 1204
AjiI CACGTC 1 cut(s) 1195
AjnI CCWGG 3 cut(s) 187, 200, 1206
AleI CACNNNNGTG 1 cut(s) 333
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
AluBI AGCT 4 cut(s) 18, 282, 818, 1066
AluI AGCT 4 cut(s) 18, 282, 818, 1066
Alw21I GWGCWC 1 cut(s) 854
Alw26I GTCTC 4 cut(s) 224, 225, 355, 639
AlwI GGATC 2 cut(s) 895, 1180
Ama87I CYCGRG 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 339
AoxI GGCC 1 cut(s) 1209
ApoI RAATTY 2 cut(s) 706, 859
Asp700I GAANNNNTTC 1 cut(s) 440
AspS9I GGNCC 1 cut(s) 342
AsuC2I CCSGG 3 cut(s) 251, 359, 369
AsuHPI GGTGA 4 cut(s) 62, 253, 289, 532
AsuII TTCGAA 3 cut(s) 575, 620, 1155
AvaI CYCGRG 1 cut(s) 227
AvaII GGWCC 1 cut(s) 342
BaeGI GKGCMC 1 cut(s) 613
BaeI ACNNNNGTAYC 2 cut(s) 903, 936
BanII GRGCYC 1 cut(s) 250
BbsI GAAGAC 2 cut(s) 996, 1075
Bbv12I GWGCWC 1 cut(s) 854
BccI CCATC 1 cut(s) 292
BceAI ACGGC 2 cut(s) 43, 318
BciT130I CCWGG 3 cut(s) 189, 202, 1208
BcnI CCSGG 3 cut(s) 251, 359, 369
BcoDI GTCTC 4 cut(s) 224, 225, 355, 639
BfaI CTAG 3 cut(s) 15, 92, 594
BfmI CTRYAG 1 cut(s) 177
Bme1390I CCNGG 6 cut(s) 189, 202, 251, 359, 369, 1208
Bme18I GGWCC 1 cut(s) 342
BmeT110I CYCGRG 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 1195
BmgT120I GGNCC 1 cut(s) 342
BmiI GGNNCC 2 cut(s) 366, 1029
BmrFI CCNGG 6 cut(s) 189, 202, 251, 359, 369, 1208
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 1 cut(s) 39
BmuI ACTGGG 1 cut(s) 247
BoxI GACNNNNGTC 2 cut(s) 347, 1079
BpiI GAAGAC 2 cut(s) 996, 1075
BpmI CTGGAG 1 cut(s) 236
Bpu14I TTCGAA 3 cut(s) 575, 620, 1155
BpuMI CCSGG 3 cut(s) 251, 359, 369
BsaJI CCNNGG 4 cut(s) 249, 368, 939, 1059
BsaWI WCCGGW 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 431, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 256
Bse118I RCCGGY 2 cut(s) 39, 53
Bse1I ACTGG 1 cut(s) 242
BseAI TCCGGA 1 cut(s) 339
BseBI CCWGG 3 cut(s) 189, 202, 1208
BseDI CCNNGG 4 cut(s) 249, 368, 939, 1059
BseLI CCNNNNNNNGG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 770
BseNI ACTGG 1 cut(s) 242
BseRI GAGGAG 1 cut(s) 508
BseSI GKGCMC 1 cut(s) 613
BshFI GGCC 1 cut(s) 1211
BsiHKAI GWGCWC 1 cut(s) 854
BsiHKCI CYCGRG 1 cut(s) 227
BsiSI CCGG 6 cut(s) 40, 54, 251, 340, 358, 368
BsiWI CGTACG 1 cut(s) 34
BslFI GGGAC 1 cut(s) 921
BslI CCNNNNNNNGG 1 cut(s) 256
BsmAI GTCTC 4 cut(s) 224, 225, 355, 639
BsmBI CGTCTC 3 cut(s) 224, 355, 639
BsmFI GGGAC 1 cut(s) 921
BsnI GGCC 1 cut(s) 1211
BsoBI CYCGRG 1 cut(s) 227
Bsp119I TTCGAA 3 cut(s) 575, 620, 1155
Bsp1286I GDGCHC 3 cut(s) 250, 613, 854
Bsp13I TCCGGA 1 cut(s) 339
Bsp143I GATC 2 cut(s) 900, 1185
BspACI CCGC 2 cut(s) 331, 1050
BspANI GGCC 1 cut(s) 1211
BspCNI CTCAG 1 cut(s) 769
BspEI TCCGGA 1 cut(s) 339
BspLI GGNNCC 2 cut(s) 366, 1029
BspPI GGATC 2 cut(s) 895, 1180
BspT104I TTCGAA 3 cut(s) 575, 620, 1155
BsrFI RCCGGY 2 cut(s) 39, 53
BsrI ACTGG 1 cut(s) 242
BssAI RCCGGY 2 cut(s) 39, 53
BssECI CCNNGG 4 cut(s) 249, 368, 939, 1059
BssMI GATC 2 cut(s) 900, 1185
BssT1I CCWWGG 1 cut(s) 939
Bst2UI CCWGG 3 cut(s) 189, 202, 1208
Bst6I CTCTTC 3 cut(s) 228, 534, 592
BstBI TTCGAA 3 cut(s) 575, 620, 1155
BstC8I GCNNGC 1 cut(s) 41
BstDEI CTNAG 2 cut(s) 756, 819
BstDSI CCRYGG 1 cut(s) 1059
BstEII GGTNACC 1 cut(s) 259
BstKTI GATC 2 cut(s) 903, 1188
BstMAI GTCTC 4 cut(s) 224, 225, 355, 639
BstMBI GATC 2 cut(s) 900, 1185
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 3 cut(s) 189, 202, 1208
BstPAI GACNNNNGTC 2 cut(s) 347, 1079
BstPI GGTNACC 1 cut(s) 259
BstSCI CCNGG 6 cut(s) 187, 200, 249, 357, 367, 1206
BstSFI CTRYAG 1 cut(s) 177
BstSLI GKGCMC 1 cut(s) 613
BstV2I GAAGAC 2 cut(s) 996, 1075
BstXI CCANNNNNNTGG 1 cut(s) 208
BsuRI GGCC 1 cut(s) 1211
BtgI CCRYGG 1 cut(s) 1059
BtrI CACGTC 1 cut(s) 1195
Cac8I GCNNGC 1 cut(s) 41
Cfr10I RCCGGY 2 cut(s) 39, 53
Cfr13I GGNCC 1 cut(s) 342
Csp6I GTAC 2 cut(s) 35, 661
CspCI CAANNNNNGTGG 4 cut(s) 679, 714, 1116, 1151
CviAII CATG 2 cut(s) 140, 908
CviQI GTAC 2 cut(s) 35, 661
DdeI CTNAG 2 cut(s) 756, 819
DpnI GATC 2 cut(s) 902, 1187
DpnII GATC 2 cut(s) 900, 1185
DrdI GACNNNNNNGTC 1 cut(s) 73
DseDI GACNNNNNNGTC 1 cut(s) 73
Eam1104I CTCTTC 3 cut(s) 228, 534, 592
EarI CTCTTC 3 cut(s) 228, 534, 592
Eco130I CCWWGG 1 cut(s) 939
Eco24I GRGCYC 1 cut(s) 250
Eco47I GGWCC 1 cut(s) 342
Eco57I CTGAAG 1 cut(s) 1069
Eco88I CYCGRG 1 cut(s) 227
Eco91I GGTNACC 1 cut(s) 259
EcoO65I GGTNACC 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 859
EcoRII CCWGG 3 cut(s) 187, 200, 1206
EcoT14I CCWWGG 1 cut(s) 939
EcoT38I GRGCYC 1 cut(s) 250
ErhI CCWWGG 1 cut(s) 939
Esp3I CGTCTC 3 cut(s) 224, 355, 639
FaeI CATG 2 cut(s) 143, 911
FaiI YATR 8 cut(s) 49, 141, 377, 675, 732, 909, 1025, 1146
FalI AAGNNNNNCTT 2 cut(s) 964, 996
FaqI GGGAC 1 cut(s) 921
FatI CATG 2 cut(s) 139, 907
FriOI GRGCYC 1 cut(s) 250
FspBI CTAG 3 cut(s) 15, 92, 594
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 1 cut(s) 1211
HapII CCGG 6 cut(s) 40, 54, 251, 340, 358, 368
Hin1II CATG 2 cut(s) 143, 911
HincII GTYRAC 1 cut(s) 838
HindII GTYRAC 1 cut(s) 838
HpaII CCGG 6 cut(s) 40, 54, 251, 340, 358, 368
HphI GGTGA 4 cut(s) 62, 253, 289, 532
Hpy166II GTNNAC 1 cut(s) 838
Hpy188I TCNGA 7 cut(s) 66, 82, 318, 759, 810, 856, 925
Hpy188III TCNNGA 4 cut(s) 92, 227, 340, 395
Hpy8I GTNNAC 1 cut(s) 838
HpyCH4IV ACGT 2 cut(s) 60, 1194
HpyCH4V TGCA 6 cut(s) 51, 287, 639, 778, 792, 1228
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 2 cut(s) 756, 819
HpySE526I ACGT 2 cut(s) 60, 1194
Hsp92II CATG 2 cut(s) 143, 911
Kpn2I TCCGGA 1 cut(s) 339
KroI GCCGGC 1 cut(s) 39
KroNI GCCGGC 1 cut(s) 41
Kzo9I GATC 2 cut(s) 900, 1185
LmnI GCTCC 3 cut(s) 701, 1027, 1063
LweI GCATC 1 cut(s) 39
MaeI CTAG 3 cut(s) 15, 92, 594
MaeII ACGT 2 cut(s) 60, 1194
MaeIII GTNAC 1 cut(s) 259
MalI GATC 2 cut(s) 902, 1187
MboI GATC 2 cut(s) 900, 1185
MhlI GDGCHC 3 cut(s) 250, 613, 854
MluCI AATT 7 cut(s) 634, 706, 859, 998, 1032, 1103, 1117
MlyI GAGTC 8 cut(s) 61, 89, 227, 307, 388, 400, 748, 1121
MmeI TCCRAC 3 cut(s) 89, 341, 928
MnlI CCTC 8 cut(s) 355, 355, 460, 486, 511, 643, 1036, 1171
MroI TCCGGA 1 cut(s) 339
MroNI GCCGGC 1 cut(s) 39
MroXI GAANNNNTTC 1 cut(s) 440
MseI TTAA 6 cut(s) 117, 206, 525, 710, 1035, 1237
MslI CAYNNNNRTG 2 cut(s) 333, 810
MspA1I CMGCKG 1 cut(s) 1050
MspI CCGG 6 cut(s) 40, 54, 251, 340, 358, 368
MspR9I CCNGG 6 cut(s) 189, 202, 251, 359, 369, 1208
MvaI CCWGG 3 cut(s) 189, 202, 1208
MwoI GCNNNNNNNGC 1 cut(s) 36
NaeI GCCGGC 1 cut(s) 41
NciI CCSGG 3 cut(s) 251, 359, 369
NdeII GATC 2 cut(s) 900, 1185
NgoMIV GCCGGC 1 cut(s) 39
NlaIII CATG 2 cut(s) 143, 911
NlaIV GGNNCC 2 cut(s) 366, 1029
NspV TTCGAA 3 cut(s) 575, 620, 1155
OliI CACNNNNGTG 1 cut(s) 333
PdiI GCCGGC 1 cut(s) 41
PdmI GAANNNNTTC 1 cut(s) 440
PfeI GAWTC 2 cut(s) 1055, 1152
Pfl23II CGTACG 1 cut(s) 34
PfoI TCCNGGA 1 cut(s) 357
PleI GAGTC 8 cut(s) 61, 89, 226, 307, 387, 399, 748, 1120
PpsI GAGTC 8 cut(s) 61, 89, 226, 307, 387, 399, 748, 1120
PshAI GACNNNNGTC 2 cut(s) 347, 1079
PsiI TTATAA 1 cut(s) 675
Psp1406I AACGTT 1 cut(s) 60
Psp6I CCWGG 3 cut(s) 187, 200, 1206
PspEI GGTNACC 1 cut(s) 259
PspGI CCWGG 3 cut(s) 187, 200, 1206
PspLI CGTACG 1 cut(s) 34
PspN4I GGNNCC 2 cut(s) 366, 1029
PspPI GGNCC 1 cut(s) 342
RsaI GTAC 2 cut(s) 36, 662
RsaNI GTAC 2 cut(s) 35, 661
RseI CAYNNNNRTG 2 cut(s) 333, 810
SaqAI TTAA 6 cut(s) 117, 206, 525, 710, 1035, 1237
Sau3AI GATC 2 cut(s) 900, 1185
Sau96I GGNCC 1 cut(s) 342
SchI GAGTC 8 cut(s) 61, 89, 227, 307, 388, 400, 748, 1121
ScrFI CCNGG 6 cut(s) 189, 202, 251, 359, 369, 1208
SduI GDGCHC 3 cut(s) 250, 613, 854
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 177
SfuI TTCGAA 3 cut(s) 575, 620, 1155
SinI GGWCC 1 cut(s) 342
SmiMI CAYNNNNRTG 2 cut(s) 333, 810
Sse9I AATT 7 cut(s) 634, 706, 859, 998, 1032, 1103, 1117
SsiI CCGC 2 cut(s) 331, 1050
SspI AATATT 1 cut(s) 929
SspMI CTAG 3 cut(s) 15, 92, 594
StyD4I CCNGG 6 cut(s) 187, 200, 249, 357, 367, 1206
StyI CCWWGG 1 cut(s) 939
TaiI ACGT 2 cut(s) 63, 1197
TaqI TCGA 5 cut(s) 449, 575, 620, 1140, 1155
TaqII GACCGA 1 cut(s) 20
TasI AATT 7 cut(s) 634, 706, 859, 998, 1032, 1103, 1117
TfiI GAWTC 2 cut(s) 1055, 1152
Tru1I TTAA 6 cut(s) 117, 206, 525, 710, 1035, 1237
Tru9I TTAA 6 cut(s) 117, 206, 525, 710, 1035, 1237
TspDTI ATGAA 7 cut(s) 156, 552, 828, 924, 974, 1002, 1161
TspGWI ACGGA 2 cut(s) 337, 1076
VpaK11BI GGWCC 1 cut(s) 342
XapI RAATTY 2 cut(s) 706, 859
XbaI TCTAGA 1 cut(s) 91
XcmI CCANNNNNNNNNTGG 1 cut(s) 1066
XmnI GAANNNNTTC 1 cut(s) 440
XspI CTAG 3 cut(s) 15, 92, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.