RchiOBHm_Chr3g0464851

Protein of unknown function, DUF617

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016161
Physical Location & Seq
Reverse (-)
11824530 .. 11825264
735 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 513 bp
ATGGTGATCGGCACCATCTTCGGGCACCGCCGCGGCCACGTCTGGTTCTGCGTCCAGCACGACCGCCTCTCGACCCGACCCGCGCTCCTCCTGGAGCTCTCCATCTTGACCCACCAGCTCGTCAAGGAAATGCGGTTCGGGTTGGTCCGGATCACCCTCGAGTGCGACGACCGCTCCTCCGATCTCGCCACGTGTCCTCTCCGGTCCGTCCCCGTCTGGGCGCTGCACTGCAACGGCCGCAAGCTCGGGTTCGCCGCCCGGAGGAAAGCCGGCGACAAAGTCCGCCTGATGCTGAAGGCCATGGAGTCAACGACCGTCGGAGCCGGGGCCTTGCCAGCCGGGTTCGGGTTCGGGTCCGGGTCGTCGGACTCGGAGGGCCCGGTTATGTACATGAGGTCGAATTACGAGCACGTGGTTGGGAGCGCCGACTCGGAGTCGTTTCATCTGATCAACCCGGATCAGTTCCCGGGTCAAGAACTCAGTGTCTTCTTGCTCAGGTCCAGAAACTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF617

Protein Analysis

170

Amino Acids

18.79

Weight (kDa)

9.1

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF617 PF04759 2 - 166 9.9e-59 Protein of unknown function, DUF617
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016161)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G37880
fragaria_vesca FvH4_6g12850
malus_domestica MD04G1137600.v1.1 MD12G1152400.v1.1
prunus_persica Prupe.6G263600_v2.0.a1
pyrus_communis pycom04g12600
rosa_chinensis RchiOBHm_Chr3g0464851
rosa_laevigata RLG00000024669
rosa_multiflora Rmu_sc0007114.1_g000004
rosa_roxburghii Rroxscaffold_6G00415390
rosa_rugosa Rorug03G0074400
rosa_samantha Rh3BG137200 Rh3CG139800 Rh3DG138600
rosa_wichuraiana Rw3G011210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 11, 24
AccBSI CCGCTC 1 cut(s) 174
AccII CGCG 2 cut(s) 33, 83
AccIII TCCGGA 1 cut(s) 147
AclWI GGATC 2 cut(s) 158, 465
AcoI YGGCCR 2 cut(s) 34, 235
AcuI CTGAAG 1 cut(s) 314
AcvI CACGTG 2 cut(s) 192, 412
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 4 cut(s) 21, 217, 261, 345
AflIII ACRYGT 1 cut(s) 191
AhdI GACNNNNNGTC 1 cut(s) 433
AjiI CACGTC 1 cut(s) 40
AjnI CCWGG 1 cut(s) 90
AloI GAACNNNNNNTCC 2 cut(s) 119, 151
AluBI AGCT 3 cut(s) 97, 118, 244
AluI AGCT 3 cut(s) 97, 118, 244
Alw21I GWGCWC 2 cut(s) 99, 411
AlwI GGATC 2 cut(s) 158, 465
Ama87I CYCGRG 3 cut(s) 158, 245, 466
Aor13HI TCCGGA 1 cut(s) 147
AoxI GGCC 5 cut(s) 34, 235, 297, 327, 376
ApaI GGGCCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 223
AspLEI GCGC 3 cut(s) 85, 223, 425
AspS9I GGNCC 7 cut(s) 145, 204, 327, 354, 376, 377, 498
AsuC2I CCSGG 8 cut(s) 259, 325, 340, 358, 380, 455, 467, 468
AsuHPI GGTGA 2 cut(s) 16, 145
AvaI CYCGRG 3 cut(s) 158, 245, 466
AvaII GGWCC 4 cut(s) 145, 204, 354, 498
BaeGI GKGCMC 2 cut(s) 27, 380
BanI GGYRCC 2 cut(s) 11, 24
BanII GRGCYC 2 cut(s) 99, 380
BbrPI CACGTG 2 cut(s) 192, 412
BbsI GAAGAC 1 cut(s) 478
Bbv12I GWGCWC 2 cut(s) 99, 411
BbvI GCAGC 1 cut(s) 210
BccI CCATC 2 cut(s) 23, 110
BceAI ACGGC 1 cut(s) 250
BcgI CGANNNNNNTGC 1 cut(s) 35
BciT130I CCWGG 1 cut(s) 92
BclI TGATCA 1 cut(s) 447
BcnI CCSGG 8 cut(s) 259, 325, 340, 358, 380, 455, 467, 468
BfoI RGCGCY 2 cut(s) 224, 426
BisI GCNGC 5 cut(s) 31, 34, 224, 238, 255
BlsI GCNGC 5 cut(s) 32, 35, 225, 239, 256
Bme1390I CCNGG 9 cut(s) 92, 259, 325, 340, 358, 380, 455, 467, 468
Bme18I GGWCC 4 cut(s) 145, 204, 354, 498
BmeRI GACNNNNNGTC 1 cut(s) 433
BmeT110I CYCGRG 3 cut(s) 158, 245, 466
BmgBI CACGTC 1 cut(s) 40
BmgT120I GGNCC 7 cut(s) 145, 204, 327, 354, 376, 377, 498
BmiI GGNNCC 6 cut(s) 13, 26, 322, 328, 355, 378
BmrFI CCNGG 9 cut(s) 92, 259, 325, 340, 358, 380, 455, 467, 468
BmsI GCATC 1 cut(s) 279
BpiI GAAGAC 1 cut(s) 478
BpmI CTGGAG 1 cut(s) 113
Bpu10I CCTNAGC 1 cut(s) 494
BpuMI CCSGG 8 cut(s) 259, 325, 340, 358, 380, 455, 467, 468
BsaAI YACGTR 2 cut(s) 192, 412
BsaJI CCNNGG 4 cut(s) 31, 300, 324, 466
BsaWI WCCGGW 2 cut(s) 147, 201
BsaXI ACNNNNNCTCC 6 cut(s) 69, 99, 158, 161, 188, 191
Bsc4I CCNNNNNNNGG 4 cut(s) 21, 217, 261, 345
Bse118I RCCGGY 1 cut(s) 269
BseAI TCCGGA 1 cut(s) 147
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 4 cut(s) 31, 300, 324, 466
BseLI CCNNNNNNNGG 4 cut(s) 21, 217, 261, 345
BseMII CTCAG 2 cut(s) 493, 508
BseRI GAGGAG 2 cut(s) 77, 166
BseSI GKGCMC 2 cut(s) 27, 380
BseX3I CGGCCG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 210
BsgI GTGCAG 1 cut(s) 209
Bsh1236I CGCG 2 cut(s) 33, 83
Bsh1285I CGRYCG 4 cut(s) 64, 172, 238, 315
BshFI GGCC 5 cut(s) 36, 237, 299, 329, 378
BshNI GGYRCC 2 cut(s) 11, 24
BsiEI CGRYCG 4 cut(s) 64, 172, 238, 315
BsiHKAI GWGCWC 2 cut(s) 99, 411
BsiHKCI CYCGRG 3 cut(s) 158, 245, 466
BslFI GGGAC 1 cut(s) 194
BslI CCNNNNNNNGG 4 cut(s) 21, 217, 261, 345
BsmFI GGGAC 1 cut(s) 194
BsnI GGCC 5 cut(s) 36, 237, 299, 329, 378
BsoBI CYCGRG 3 cut(s) 158, 245, 466
Bsp120I GGGCCC 1 cut(s) 376
Bsp1286I GDGCHC 4 cut(s) 27, 99, 380, 411
Bsp13I TCCGGA 1 cut(s) 147
Bsp1407I TGTACA 1 cut(s) 387
Bsp143I GATC 5 cut(s) 6, 150, 181, 447, 457
Bsp19I CCATGG 1 cut(s) 300
BspANI GGCC 5 cut(s) 36, 237, 299, 329, 378
BspCNI CTCAG 2 cut(s) 492, 507
BspEI TCCGGA 1 cut(s) 147
BspFNI CGCG 2 cut(s) 33, 83
BspLI GGNNCC 6 cut(s) 13, 26, 322, 328, 355, 378
BspPI GGATC 2 cut(s) 158, 465
BspT107I GGYRCC 2 cut(s) 11, 24
BsrBI CCGCTC 1 cut(s) 174
BsrFI RCCGGY 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 387
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 4 cut(s) 31, 300, 324, 466
BssMI GATC 5 cut(s) 6, 150, 181, 447, 457
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 1 cut(s) 316
BstAUI TGTACA 1 cut(s) 387
BstBAI YACGTR 2 cut(s) 192, 412
BstC8I GCNNGC 3 cut(s) 242, 271, 336
BstDEI CTNAG 2 cut(s) 479, 494
BstDSI CCRYGG 2 cut(s) 31, 300
BstFNI CGCG 2 cut(s) 33, 83
BstH2I RGCGCY 2 cut(s) 224, 426
BstHHI GCGC 3 cut(s) 85, 223, 425
BstKTI GATC 5 cut(s) 9, 153, 184, 450, 460
BstMBI GATC 5 cut(s) 6, 150, 181, 447, 457
BstMCI CGRYCG 4 cut(s) 64, 172, 238, 315
BstMWI GCNNNNNNNGC 3 cut(s) 171, 237, 335
BstNI CCWGG 1 cut(s) 92
BstSCI CCNGG 9 cut(s) 90, 257, 323, 338, 356, 378, 453, 465, 466
BstSLI GKGCMC 2 cut(s) 27, 380
BstUI CGCG 2 cut(s) 33, 83
BstV1I GCAGC 1 cut(s) 210
BstV2I GAAGAC 1 cut(s) 478
BstZI CGGCCG 1 cut(s) 235
BsuRI GGCC 5 cut(s) 36, 237, 299, 329, 378
BtgI CCRYGG 2 cut(s) 31, 300
BtrI CACGTC 1 cut(s) 40
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 2 cut(s) 226, 487
Cac8I GCNNGC 3 cut(s) 242, 271, 336
CfoI GCGC 3 cut(s) 85, 223, 425
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 7 cut(s) 145, 204, 327, 354, 376, 377, 498
Cfr42I CCGCGG 1 cut(s) 34
Cfr9I CCCGGG 1 cut(s) 466
CpoI CGGWCCG 1 cut(s) 204
CseI GACGC 1 cut(s) 40
Csp6I GTAC 1 cut(s) 388
CspI CGGWCCG 1 cut(s) 204
CviAII CATG 2 cut(s) 301, 391
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 2 cut(s) 479, 494
DpnI GATC 5 cut(s) 8, 152, 183, 449, 459
DpnII GATC 5 cut(s) 6, 150, 181, 447, 457
DriI GACNNNNNGTC 1 cut(s) 433
EaeI YGGCCR 2 cut(s) 34, 235
EagI CGGCCG 1 cut(s) 235
Eam1105I GACNNNNNGTC 1 cut(s) 433
EciI GGCGGA 1 cut(s) 272
Ecl136II GAGCTC 1 cut(s) 97
EclXI CGGCCG 1 cut(s) 235
Eco130I CCWWGG 1 cut(s) 300
Eco24I GRGCYC 2 cut(s) 99, 380
Eco47I GGWCC 4 cut(s) 145, 204, 354, 498
Eco52I CGGCCG 1 cut(s) 235
Eco53kI GAGCTC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 314
Eco72I CACGTG 2 cut(s) 192, 412
Eco88I CYCGRG 3 cut(s) 158, 245, 466
EcoICRI GAGCTC 1 cut(s) 97
EcoO109I RGGNCCY 2 cut(s) 327, 376
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 300
EcoT38I GRGCYC 2 cut(s) 99, 380
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 2 cut(s) 304, 394
FaiI YATR 3 cut(s) 302, 386, 392
FaqI GGGAC 1 cut(s) 194
FatI CATG 2 cut(s) 300, 390
FauI CCCGC 1 cut(s) 88
FbaI TGATCA 1 cut(s) 447
Fnu4HI GCNGC 5 cut(s) 31, 34, 224, 238, 255
FriOI GRGCYC 2 cut(s) 99, 380
Fsp4HI GCNGC 5 cut(s) 31, 34, 224, 238, 255
GlaI GCGC 3 cut(s) 84, 222, 424
GluI GCNGC 5 cut(s) 31, 34, 224, 238, 255
GsuI CTGGAG 1 cut(s) 113
HaeII RGCGCY 2 cut(s) 224, 426
HaeIII GGCC 5 cut(s) 36, 237, 299, 329, 378
HgaI GACGC 1 cut(s) 40
HhaI GCGC 3 cut(s) 85, 223, 425
Hin1II CATG 2 cut(s) 304, 394
Hin6I GCGC 3 cut(s) 83, 221, 423
HinP1I GCGC 3 cut(s) 83, 221, 423
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 4 cut(s) 305, 368, 428, 434
HphI GGTGA 2 cut(s) 16, 145
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 6 cut(s) 181, 320, 367, 373, 433, 447
Hpy188III TCNNGA 5 cut(s) 70, 106, 148, 473, 501
Hpy8I GTNNAC 1 cut(s) 309
Hpy99I CGWCG 3 cut(s) 170, 320, 367
HpyAV CCTTC 1 cut(s) 289
HpyCH4III ACNGT 1 cut(s) 316
HpyCH4IV ACGT 3 cut(s) 39, 191, 411
HpyCH4V TGCA 2 cut(s) 226, 231
HpyF10VI GCNNNNNNNGC 3 cut(s) 171, 237, 335
HpyF3I CTNAG 2 cut(s) 479, 494
HpySE526I ACGT 3 cut(s) 39, 191, 411
Hsp92II CATG 2 cut(s) 304, 394
HspAI GCGC 3 cut(s) 83, 221, 423
Kpn2I TCCGGA 1 cut(s) 147
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 447
KspI CCGCGG 1 cut(s) 34
Kzo9I GATC 5 cut(s) 6, 150, 181, 447, 457
LmnI GCTCC 5 cut(s) 90, 94, 179, 320, 420
Lsp1109I GCAGC 1 cut(s) 210
LweI GCATC 1 cut(s) 279
MaeII ACGT 3 cut(s) 39, 191, 411
MalI GATC 5 cut(s) 8, 152, 183, 449, 459
MbiI CCGCTC 1 cut(s) 174
MboI GATC 5 cut(s) 6, 150, 181, 447, 457
MboII GAAGA 2 cut(s) 10, 478
MhlI GDGCHC 4 cut(s) 27, 99, 380, 411
MluCI AATT 1 cut(s) 400
MlyI GAGTC 4 cut(s) 314, 362, 422, 443
MmeI TCCRAC 2 cut(s) 298, 345
MnlI CCTC 8 cut(s) 77, 98, 167, 187, 207, 255, 367, 387
MroI TCCGGA 1 cut(s) 147
MroNI GCCGGC 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 33
MspR9I CCNGG 9 cut(s) 92, 259, 325, 340, 358, 380, 455, 467, 468
MvaI CCWGG 1 cut(s) 92
MvnI CGCG 2 cut(s) 33, 83
MwoI GCNNNNNNNGC 3 cut(s) 171, 237, 335
NaeI GCCGGC 1 cut(s) 271
NciI CCSGG 8 cut(s) 259, 325, 340, 358, 380, 455, 467, 468
NcoI CCATGG 1 cut(s) 300
NdeII GATC 5 cut(s) 6, 150, 181, 447, 457
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 2 cut(s) 304, 394
NlaIV GGNNCC 6 cut(s) 13, 26, 322, 328, 355, 378
PaeR7I CTCGAG 1 cut(s) 158
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PdiI GCCGGC 1 cut(s) 271
PflFI GACNNNGTC 1 cut(s) 278
PfoI TCCNGGA 1 cut(s) 90
PkrI GCNGC 5 cut(s) 32, 35, 225, 239, 256
PleI GAGTC 4 cut(s) 313, 362, 422, 442
PmaCI CACGTG 2 cut(s) 192, 412
PmlI CACGTG 2 cut(s) 192, 412
PpsI GAGTC 4 cut(s) 313, 362, 422, 442
Ppu21I YACGTR 2 cut(s) 192, 412
Psp124BI GAGCTC 1 cut(s) 99
Psp6I CCWGG 1 cut(s) 90
PspCI CACGTG 2 cut(s) 192, 412
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 6 cut(s) 13, 26, 322, 328, 355, 378
PspOMI GGGCCC 1 cut(s) 376
PspPI GGNCC 7 cut(s) 145, 204, 327, 354, 376, 377, 498
PspXI VCTCGAGB 1 cut(s) 158
PsyI GACNNNGTC 1 cut(s) 278
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
Rsr2I CGGWCCG 1 cut(s) 204
RsrII CGGWCCG 1 cut(s) 204
SacI GAGCTC 1 cut(s) 99
SacII CCGCGG 1 cut(s) 34
SatI GCNGC 5 cut(s) 31, 34, 224, 238, 255
Sau3AI GATC 5 cut(s) 6, 150, 181, 447, 457
Sau96I GGNCC 7 cut(s) 145, 204, 327, 354, 376, 377, 498
SchI GAGTC 4 cut(s) 314, 362, 422, 443
ScrFI CCNGG 9 cut(s) 92, 259, 325, 340, 358, 380, 455, 467, 468
SduI GDGCHC 4 cut(s) 27, 99, 380, 411
SetI ASST 8 cut(s) 42, 99, 120, 194, 246, 398, 414, 500
SfaNI GCATC 1 cut(s) 279
Sfr274I CTCGAG 1 cut(s) 158
Sfr303I CCGCGG 1 cut(s) 34
SgrBI CCGCGG 1 cut(s) 34
SinI GGWCC 4 cut(s) 145, 204, 354, 498
SlaI CTCGAG 1 cut(s) 158
SmaI CCCGGG 1 cut(s) 468
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 400
SstI GAGCTC 1 cut(s) 99
StyD4I CCNGG 9 cut(s) 90, 257, 323, 338, 356, 378, 453, 465, 466
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 316
TaiI ACGT 3 cut(s) 42, 194, 414
TaqI TCGA 3 cut(s) 71, 159, 398
TasI AATT 1 cut(s) 400
TatI WGTACW 1 cut(s) 387
TauI GCSGC 4 cut(s) 33, 36, 240, 257
TscAI CASTG 2 cut(s) 233, 487
TseI GCWGC 1 cut(s) 223
TspDTI ATGAA 1 cut(s) 431
TspGWI ACGGA 1 cut(s) 196
TspMI CCCGGG 1 cut(s) 466
TspRI CASTG 2 cut(s) 233, 487
Tth111I GACNNNGTC 1 cut(s) 278
VpaK11BI GGWCC 4 cut(s) 145, 204, 354, 498
XhoI CTCGAG 1 cut(s) 158
XmaI CCCGGG 1 cut(s) 466
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.