RchiOBHm_Chr3g0465371

Regulator of chromosome condensation (RCC1) repeat

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0007631
Physical Location & Seq
Reverse (-)
12157334 .. 12159531
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
ATGGGACAGGTTTGGGGTTGGGGCTATGGAGGCGAAGGACAGCTAGGTTTGGGTTCACGGATGAAGATGGTCTCTTCTCCTCATCTCATACCCTGCATCGATCAATCTGCTTCTGGGAAGGACAAGTTTTCTGCAGTATCTCAAGGATCAAAATTTCCTGGAAGTTATGTGAAGGAAATCGCTTGTGGGGGTCGACATAGTGCAGTAATAACAGATGCAGGAGCACTGCTTACTTTTGGCTGGGGCCTGTATGGACAGTGTGGGCAAGGGAATACGAAAGATCAGCTAAAAGTTACTCGTGTGGAGTCATTAGTGGATACTAGAGTGAAAAGTATAGCTGCTGGACTATGGCATACTCTCTGTATATCTGTTGATGGCCGTGTATATGCTTTTGGGGGTAATCAGTTTGGACAATTGGGAACAGGTGCTGAGGAAGCTGAGACTCTACCTAGGCTTCTGAACTCTTCAAGTCTGGAAAATAAGCATGCCAAAGCAGTTTCCTGTGGAGCACGCCATAGTACTATACTGACGGAAGATGGTCAGTTATTTAGCTGGGGATGGAACAAGTATGGGCAGCTTGGTCTGGGTGATTCTGTGGATAGGAACATTCCTTGTCAAGTTTCTATAGATGGCTGCTTGCCTAAGCATATTGCATGTGGCTGGTGGCACACGCTATTGCTGGCGGAAATACCCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RCC1 RCC1_2

Protein Analysis

232

Amino Acids

24.75

Weight (kDa)

7.6

Isoelectric Point (pI)

36.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RCC1 PF00415 2 - 70 4.5e-08 Regulator of chromosome condensation (RCC1) repeat
WD40_RLD PF25390 2 - 228 4.2e-50 RCC1-like domain
RCC1_2 PF13540 57 - 86 2.7e-06 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 74 - 122 3.7e-10 Regulator of chromosome condensation (RCC1) repeat
Alsin_RLD PF25384 76 - 144 3.5e-07 Alsin RCC1-like domain
RCC1_2 PF13540 109 - 138 1.3e-09 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 125 - 176 1.4e-13 Regulator of chromosome condensation (RCC1) repeat
RCC1_2 PF13540 164 - 192 9.6e-12 Regulator of chromosome condensation (RCC1) repeat
RCC1 PF00415 179 - 227 9.2e-16 Regulator of chromosome condensation (RCC1) repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 193
AciI CCGC 1 cut(s) 683
AclWI GGATC 1 cut(s) 154
AcoI YGGCCR 1 cut(s) 376
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 1 cut(s) 520
AgsI TTSAA 1 cut(s) 468
AjnI CCWGG 1 cut(s) 157
AluBI AGCT 6 cut(s) 43, 286, 338, 437, 552, 577
AluI AGCT 6 cut(s) 43, 286, 338, 437, 552, 577
Alw21I GWGCWC 2 cut(s) 226, 511
Alw26I GTCTC 2 cut(s) 76, 434
AlwI GGATC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 2 cut(s) 244, 376
ApeKI GCWGC 3 cut(s) 338, 574, 633
ApoI RAATTY 1 cut(s) 152
AspA2I CCTAGG 1 cut(s) 449
AspS9I GGNCC 1 cut(s) 244
AsuHPI GGTGA 1 cut(s) 599
AvrII CCTAGG 1 cut(s) 449
BaeI ACNNNNGTAYC 2 cut(s) 309, 342
BauI CACGAG 1 cut(s) 297
Bbv12I GWGCWC 2 cut(s) 226, 511
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 3 cut(s) 325, 586, 620
BccI CCATC 5 cut(s) 61, 368, 530, 552, 623
BceAI ACGGC 1 cut(s) 363
BcgI CGANNNNNNTGC 2 cut(s) 89, 123
BciT130I CCWGG 1 cut(s) 159
BciVI GTATCC 1 cut(s) 310
BcoDI GTCTC 2 cut(s) 76, 434
BfaI CTAG 3 cut(s) 44, 321, 450
BfmI CTRYAG 2 cut(s) 132, 624
BfuI GTATCC 1 cut(s) 310
BisI GCNGC 3 cut(s) 339, 575, 634
BlnI CCTAGG 1 cut(s) 449
BlsI GCNGC 3 cut(s) 340, 576, 635
BmcAI AGTACT 1 cut(s) 520
Bme1390I CCNGG 1 cut(s) 159
BmgT120I GGNCC 1 cut(s) 244
BmiI GGNNCC 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 159
BmsI GCATC 2 cut(s) 105, 205
Bpu10I CCTNAGC 2 cut(s) 429, 642
BpuEI CTTGAG 1 cut(s) 126
Bsa29I ATCGAT 1 cut(s) 99
BsaI GGTCTC 1 cut(s) 76
BsaJI CCNNGG 1 cut(s) 449
BseBI CCWGG 1 cut(s) 159
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 449
BseGI GGATG 2 cut(s) 66, 563
BseMII CTCAG 2 cut(s) 420, 429
BseRI GAGGAG 1 cut(s) 69
BseXI GCAGC 3 cut(s) 325, 586, 620
BseYI CCCAGC 2 cut(s) 240, 552
BsgI GTGCAG 1 cut(s) 222
BshFI GGCC 2 cut(s) 246, 378
BshVI ATCGAT 1 cut(s) 99
BsiHKAI GWGCWC 2 cut(s) 226, 511
BslFI GGGAC 1 cut(s) 18
BsmAI GTCTC 2 cut(s) 76, 434
BsmFI GGGAC 1 cut(s) 18
BsnI GGCC 2 cut(s) 246, 378
Bso31I GGTCTC 1 cut(s) 76
Bsp1286I GDGCHC 2 cut(s) 226, 511
Bsp143I GATC 3 cut(s) 100, 146, 280
BspACI CCGC 1 cut(s) 683
BspANI GGCC 2 cut(s) 246, 378
BspCNI CTCAG 2 cut(s) 421, 430
BspDI ATCGAT 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 245
BspMAI CTGCAG 1 cut(s) 136
BspPI GGATC 1 cut(s) 154
BspTNI GGTCTC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 449
BssMI GATC 3 cut(s) 100, 146, 280
BssSI CACGAG 1 cut(s) 297
BssT1I CCWWGG 1 cut(s) 449
Bst2BI CACGAG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 159
Bst4CI ACNGT 1 cut(s) 258
Bst6I CTCTTC 2 cut(s) 79, 469
BstC8I GCNNGC 4 cut(s) 486, 511, 638, 681
BstDEI CTNAG 3 cut(s) 429, 438, 642
BstF5I GGATG 2 cut(s) 66, 563
BstKTI GATC 3 cut(s) 103, 149, 283
BstMAI GTCTC 2 cut(s) 76, 434
BstMBI GATC 3 cut(s) 100, 146, 280
BstMWI GCNNNNNNNGC 2 cut(s) 30, 434
BstNI CCWGG 1 cut(s) 159
BstNSI RCATGY 2 cut(s) 488, 657
BstSCI CCNGG 1 cut(s) 157
BstSFI CTRYAG 2 cut(s) 132, 624
BstV1I GCAGC 3 cut(s) 325, 586, 620
Bsu15I ATCGAT 1 cut(s) 99
BsuI GTATCC 1 cut(s) 310
BsuRI GGCC 2 cut(s) 246, 378
BsuTUI ATCGAT 1 cut(s) 99
BtsCI GGATG 2 cut(s) 66, 563
BtsI GCAGTG 1 cut(s) 224
BtsIMutI CAGTG 2 cut(s) 224, 263
Cac8I GCNNGC 4 cut(s) 486, 511, 638, 681
CaiI CAGNNNCTG 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 244
ClaI ATCGAT 1 cut(s) 99
Csp6I GTAC 1 cut(s) 519
CviAII CATG 2 cut(s) 485, 654
CviQI GTAC 1 cut(s) 519
DdeI CTNAG 3 cut(s) 429, 438, 642
DpnI GATC 3 cut(s) 102, 148, 282
DpnII GATC 3 cut(s) 100, 146, 280
EaeI YGGCCR 1 cut(s) 376
Eam1104I CTCTTC 2 cut(s) 79, 469
EarI CTCTTC 2 cut(s) 79, 469
EciI GGCGGA 1 cut(s) 698
Eco130I CCWWGG 1 cut(s) 449
Eco31I GGTCTC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 449
ErhI CCWWGG 1 cut(s) 449
FaeI CATG 2 cut(s) 488, 657
FaqI GGGAC 1 cut(s) 18
FatI CATG 2 cut(s) 484, 653
FblI GTMKAC 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 339, 575, 634
FokI GGATG 2 cut(s) 73, 570
Fsp4HI GCNGC 3 cut(s) 339, 575, 634
FspBI CTAG 3 cut(s) 44, 321, 450
GluI GCNGC 3 cut(s) 339, 575, 634
GsaI CCCAGC 2 cut(s) 244, 556
HaeIII GGCC 2 cut(s) 246, 378
Hin1II CATG 2 cut(s) 488, 657
HincII GTYRAC 1 cut(s) 194
HindII GTYRAC 1 cut(s) 194
HinfI GANTC 3 cut(s) 305, 442, 590
HphI GGTGA 1 cut(s) 599
Hpy166II GTNNAC 2 cut(s) 56, 194
Hpy188I TCNGA 1 cut(s) 459
Hpy188III TCNNGA 1 cut(s) 473
Hpy8I GTNNAC 2 cut(s) 56, 194
HpyAV CCTTC 3 cut(s) 29, 112, 166
HpyCH4III ACNGT 1 cut(s) 258
HpyCH4V TGCA 5 cut(s) 96, 134, 203, 218, 653
HpyF10VI GCNNNNNNNGC 2 cut(s) 30, 434
HpyF3I CTNAG 3 cut(s) 429, 438, 642
Hsp92II CATG 2 cut(s) 488, 657
Kzo9I GATC 3 cut(s) 100, 146, 280
LmnI GCTCC 2 cut(s) 221, 506
Lsp1109I GCAGC 3 cut(s) 325, 586, 620
LweI GCATC 2 cut(s) 105, 205
MaeI CTAG 3 cut(s) 44, 321, 450
MaeIII GTNAC 1 cut(s) 292
MalI GATC 3 cut(s) 102, 148, 282
MboI GATC 3 cut(s) 100, 146, 280
MboII GAAGA 4 cut(s) 66, 76, 456, 545
MfeI CAATTG 1 cut(s) 413
MhlI GDGCHC 2 cut(s) 226, 511
MluCI AATT 2 cut(s) 152, 413
MlyI GAGTC 2 cut(s) 314, 436
MnlI CCTC 3 cut(s) 23, 90, 424
MspR9I CCNGG 1 cut(s) 159
MunI CAATTG 1 cut(s) 413
MvaI CCWGG 1 cut(s) 159
MwoI GCNNNNNNNGC 2 cut(s) 30, 434
NdeII GATC 3 cut(s) 100, 146, 280
NlaIII CATG 2 cut(s) 488, 657
NlaIV GGNNCC 1 cut(s) 245
NspI RCATGY 2 cut(s) 488, 657
PaeI GCATGC 1 cut(s) 488
PfeI GAWTC 1 cut(s) 590
PfoI TCCNGGA 1 cut(s) 157
PkrI GCNGC 3 cut(s) 340, 576, 635
PleI GAGTC 2 cut(s) 313, 436
PpsI GAGTC 2 cut(s) 313, 436
Psp6I CCWGG 1 cut(s) 157
PspFI CCCAGC 2 cut(s) 240, 552
PspGI CCWGG 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 245
PspPI GGNCC 1 cut(s) 244
PstI CTGCAG 1 cut(s) 136
PstNI CAGNNNCTG 1 cut(s) 428
RsaI GTAC 1 cut(s) 520
RsaNI GTAC 1 cut(s) 519
SalI GTCGAC 1 cut(s) 192
SatI GCNGC 3 cut(s) 339, 575, 634
Sau3AI GATC 3 cut(s) 100, 146, 280
Sau96I GGNCC 1 cut(s) 244
ScaI AGTACT 1 cut(s) 520
SchI GAGTC 2 cut(s) 314, 436
ScrFI CCNGG 1 cut(s) 159
SduI GDGCHC 2 cut(s) 226, 511
SfaNI GCATC 2 cut(s) 105, 205
SfcI CTRYAG 2 cut(s) 132, 624
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
SphI GCATGC 1 cut(s) 488
Sse9I AATT 2 cut(s) 152, 413
SsiI CCGC 1 cut(s) 683
SspMI CTAG 3 cut(s) 44, 321, 450
StyD4I CCNGG 1 cut(s) 157
StyI CCWWGG 1 cut(s) 449
TaaI ACNGT 1 cut(s) 258
TaqI TCGA 2 cut(s) 99, 193
TasI AATT 2 cut(s) 152, 413
TatI WGTACW 1 cut(s) 518
TfiI GAWTC 1 cut(s) 590
TscAI CASTG 2 cut(s) 231, 263
TseI GCWGC 3 cut(s) 338, 574, 633
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 2 cut(s) 73, 545
TspRI CASTG 2 cut(s) 231, 263
XapI RAATTY 1 cut(s) 152
XceI RCATGY 2 cut(s) 488, 657
XmaJI CCTAGG 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 193
XspI CTAG 3 cut(s) 44, 321, 450
ZrmI AGTACT 1 cut(s) 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.