Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0014364

Physical Location & Seq

Genomic Coordinates Reverse (-)

14913278 .. 14914871

Gene Structure 1594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCTTCCTATAAATATAAGCAGCACTCTTTGGTTTTAAGCTTCATGATCACGTTATTTCTGTTGCTCTTGCAATTTCAAGTTGGTATAAGTGAGCTGCAACAGAACTATTATTCCCAGAGTTGCCCTAATGCTGAAGAAATCATCAAGCAAGAGGTCACTAACCTTTACGAGGAACATGGAAATACCGCCGTCTCCTGGATCAGAAATCTCTTCCACGATTGCATTGTTGAGGGATGTGATGCGTCTCTGTTGTTAGAGGCGGCAGACGGGATGGAGTCAGAGAAAGCGTCGGATCGGAGCTTTGGGATGAGAAATTTTAAGTACGTGAACACCATCAAACAGGCCCTAGAGAAGGAATGTCCTCTTACAGTTTCTTGCGCTGATGTTATAACTCTTTCTGCAAGAGATGGCATTGTCATGTTAGGAGGGCCTCGGATTGAAATGAAAACGGGAAGGAGAGACAGCAAGGAGAGTCATGCAAGAGTGGTGGATGAGTCTATACCTAATCACAATGATTCCATCTCCTTAGTGCTCTCTCGATTTCAATCGATTGGCATCGATGTTGAAGGCACGGTTGCCCTTTTAGCTCACTCCGTGGGTCGAGTTCACTGCCTGAACCTTGTGCACAGACTCTACCCTACTGTTGATCCAACTTTGGATCCCGACCATGCTGCGTACCTCAAAGTTCGCTGCCCGAATCCAATTCCTGACCCGGAAGCAGTGCAGTATTCAAGATTCGACCGCGAAACACCCATGATTCTGGATAACATGTACTACAAGAACGTCTTGAACCACAAGGGTTTGCTCATAATCGATCAACAACTGAGTTCTGACCCAGAGACATTGCCTTTTGTGGAGAAAATGGCTTCCGATAATGGATACTTCTACGAGCAGTTTTCGAGAGCTGCAATTCTTTTGTCGGAGAACAATCCACTTACTGGAGACCAAGGAGAGATCAGAAAGGATTGCCGCTATGTGAACCGCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009636 GO:0009664 GO:0009987 GO:0016043 GO:0016209 GO:0016491 GO:0016684 GO:0030054 GO:0030312 GO:0042221 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0045229 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0055044 GO:0055114 GO:0070887 GO:0071554 GO:0071555 GO:0071669 GO:0071840 GO:0071944 GO:0097237 GO:0098542 GO:0098754 GO:0098869 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

330

Amino Acids

37.3

Weight (kDa)

5.32

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	49 - 292	9.1e-68	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014364)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37130 AT2G37130
fragaria_vesca	FvH4_6g15580
malus_domestica	MD04G1101700.v1.1
prunus_persica	Prupe.6G239400_v2.0.a1 Prupe.6G239400_v2.0.a1
pyrus_communis	pycom04g09720
rosa_chinensis	RchiOBHm_Chr3g0469141
rosa_laevigata	RLG00000024370
rosa_multiflora	Rmu_sc0000302.1_g000012
rosa_roxburghii	Rroxscaffold_6G00412160
rosa_rugosa	Rorug03G0100000 Rorug03G0100000
rosa_samantha	Rh3AG149100 Rh3BG172300 Rh3DG203300
rosa_wichuraiana	Rw3G014060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	392
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccII	CGCG	1 cut(s)	747
AciI	CCGC	5 cut(s)	189, 263, 745, 973, 985
AclWI	GGATC	5 cut(s)	209, 303, 644, 656, 669
AcsI	RAATTY	1 cut(s)	316
AcuI	CTGAAG	1 cut(s)	156
AdeI	CACNNNGTG	1 cut(s)	598
AfaI	GTAC	3 cut(s)	326, 680, 776
AfiI	CCNNNNNNNGG	4 cut(s)	172, 198, 355, 941
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	6 cut(s)	80, 443, 548, 569, 735, 793
AjnI	CCWGG	1 cut(s)	197
AloI	GAACNNNNNNTCC	2 cut(s)	98, 130
AluBI	AGCT	5 cut(s)	42, 97, 303, 590, 908
AluI	AGCT	5 cut(s)	42, 97, 303, 590, 908
Alw21I	GWGCWC	2 cut(s)	537, 630
Alw26I	GTCTC	5 cut(s)	199, 252, 456, 836, 939
Alw44I	GTGCAC	1 cut(s)	626
AlwI	GGATC	5 cut(s)	209, 303, 644, 656, 669
AoxI	GGCC	2 cut(s)	345, 431
ApaLI	GTGCAC	1 cut(s)	626
ApeKI	GCWGC	5 cut(s)	22, 97, 674, 693, 908
ApoI	RAATTY	1 cut(s)	316
AspLEI	GCGC	1 cut(s)	383
AspS9I	GGNCC	2 cut(s)	346, 431
AsuC2I	CCSGG	1 cut(s)	716
BaeGI	GKGCMC	1 cut(s)	630
BamHI	GGATCC	1 cut(s)	661
Bbv12I	GWGCWC	2 cut(s)	537, 630
BbvI	GCAGC	5 cut(s)	34, 84, 661, 680, 895
BccI	CCATC	4 cut(s)	268, 344, 404, 530
BceAI	ACGGC	1 cut(s)	176
BcgI	CGANNNNNNTGC	4 cut(s)	594, 628, 656, 690
BciT130I	CCWGG	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	875
BclI	TGATCA	1 cut(s)	48
BcnI	CCSGG	1 cut(s)	716
BcoDI	GTCTC	5 cut(s)	199, 252, 456, 836, 939
BfaI	CTAG	1 cut(s)	350
BfuI	GTATCC	1 cut(s)	875
BisI	GCNGC	7 cut(s)	23, 98, 264, 675, 694, 909, 973
BlsI	GCNGC	7 cut(s)	24, 99, 265, 676, 695, 910, 974
Bme1390I	CCNGG	2 cut(s)	199, 716
BmgT120I	GGNCC	2 cut(s)	346, 431
BmiI	GGNNCC	1 cut(s)	663
BmrFI	CCNGG	2 cut(s)	199, 716
BmsI	GCATC	2 cut(s)	232, 567
BpmI	CTGGAG	1 cut(s)	963
BpuMI	CCSGG	1 cut(s)	716
Bsa29I	ATCGAT	3 cut(s)	551, 561, 816
BsaAI	YACGTR	1 cut(s)	328
BsaBI	GATNNNNATC	2 cut(s)	547, 557
BsaI	GGTCTC	1 cut(s)	939
BsaJI	CCNNGG	3 cut(s)	434, 597, 949
Bsc4I	CCNNNNNNNGG	4 cut(s)	172, 198, 355, 941
Bse1I	ACTGG	1 cut(s)	946
Bse3DI	GCAATG	1 cut(s)	845
Bse8I	GATNNNNATC	2 cut(s)	547, 557
BseBI	CCWGG	1 cut(s)	199
BseCI	ATCGAT	3 cut(s)	551, 561, 816
BseDI	CCNNGG	3 cut(s)	434, 597, 949
BseGI	GGATG	4 cut(s)	242, 279, 315, 499
BseJI	GATNNNNATC	2 cut(s)	547, 557
BseLI	CCNNNNNNNGG	4 cut(s)	172, 198, 355, 941
BseMI	GCAATG	1 cut(s)	845
BseMII	CTCAG	1 cut(s)	818
BseNI	ACTGG	1 cut(s)	946
BseSI	GKGCMC	1 cut(s)	630
BseXI	GCAGC	5 cut(s)	34, 84, 661, 680, 895
BsgI	GTGCAG	1 cut(s)	746
Bsh1236I	CGCG	1 cut(s)	747
Bsh1285I	CGRYCG	1 cut(s)	745
BshFI	GGCC	2 cut(s)	347, 433
BshVI	ATCGAT	3 cut(s)	551, 561, 816
BsiEI	CGRYCG	1 cut(s)	745
BsiHKAI	GWGCWC	2 cut(s)	537, 630
BsiSI	CCGG	1 cut(s)	716
BslI	CCNNNNNNNGG	4 cut(s)	172, 198, 355, 941
BsmAI	GTCTC	5 cut(s)	199, 252, 456, 836, 939
BsmBI	CGTCTC	2 cut(s)	199, 252
BsnI	GGCC	2 cut(s)	347, 433
Bso31I	GGTCTC	1 cut(s)	939
Bsp1286I	GDGCHC	2 cut(s)	537, 630
Bsp143I	GATC	7 cut(s)	48, 201, 295, 649, 661, 817, 957
BspACI	CCGC	5 cut(s)	189, 263, 745, 973, 985
BspANI	GGCC	2 cut(s)	347, 433
BspCNI	CTCAG	1 cut(s)	819
BspDI	ATCGAT	3 cut(s)	551, 561, 816
BspFNI	CGCG	1 cut(s)	747
BspHI	TCATGA	1 cut(s)	45
BspLI	GGNNCC	1 cut(s)	663
BspPI	GGATC	5 cut(s)	209, 303, 644, 656, 669
BspTNI	GGTCTC	1 cut(s)	939
BsrDI	GCAATG	1 cut(s)	845
BsrI	ACTGG	1 cut(s)	946
BssECI	CCNNGG	3 cut(s)	434, 597, 949
BssMI	GATC	7 cut(s)	48, 201, 295, 649, 661, 817, 957
BssT1I	CCWWGG	1 cut(s)	949
Bst2UI	CCWGG	1 cut(s)	199
Bst4CI	ACNGT	3 cut(s)	373, 577, 646
Bst6I	CTCTTC	1 cut(s)	218
BstBAI	YACGTR	1 cut(s)	328
BstDEI	CTNAG	2 cut(s)	529, 827
BstDSI	CCRYGG	1 cut(s)	597
BstENI	CCTNNNNNAGG	2 cut(s)	170, 353
BstF5I	GGATG	4 cut(s)	242, 279, 315, 499
BstFNI	CGCG	1 cut(s)	747
BstHHI	GCGC	1 cut(s)	383
BstKTI	GATC	7 cut(s)	51, 204, 298, 652, 664, 820, 960
BstMAI	GTCTC	5 cut(s)	199, 252, 456, 836, 939
BstMBI	GATC	7 cut(s)	48, 201, 295, 649, 661, 817, 957
BstMCI	CGRYCG	1 cut(s)	745
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstNI	CCWGG	1 cut(s)	199
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	2 cut(s)	197, 714
BstSLI	GKGCMC	1 cut(s)	630
BstUI	CGCG	1 cut(s)	747
BstV1I	GCAGC	5 cut(s)	34, 84, 661, 680, 895
BstX2I	RGATCY	1 cut(s)	661
BstXI	CCANNNNNNTGG	1 cut(s)	763
BstYI	RGATCY	1 cut(s)	661
Bsu15I	ATCGAT	3 cut(s)	551, 561, 816
BsuI	GTATCC	1 cut(s)	875
BsuRI	GGCC	2 cut(s)	347, 433
BsuTUI	ATCGAT	3 cut(s)	551, 561, 816
BtgI	CCRYGG	1 cut(s)	597
BtsCI	GGATG	4 cut(s)	242, 279, 315, 499
BtsI	GCAGTG	2 cut(s)	610, 729
BtsIMutI	CAGTG	2 cut(s)	610, 729
CciI	TCATGA	1 cut(s)	45
CfoI	GCGC	1 cut(s)	383
Cfr13I	GGNCC	2 cut(s)	346, 431
ClaI	ATCGAT	3 cut(s)	551, 561, 816
CseI	GACGC	2 cut(s)	234, 279
Csp6I	GTAC	3 cut(s)	325, 679, 775
CspCI	CAANNNNNGTGG	2 cut(s)	471, 506
CviAII	CATG	7 cut(s)	46, 179, 421, 479, 671, 757, 772
CviJI	RGCY	9 cut(s)	5, 42, 97, 303, 347, 433, 590, 869, 908
CviKI_1	RGCY	9 cut(s)	5, 42, 97, 303, 347, 433, 590, 869, 908
CviQI	GTAC	3 cut(s)	325, 679, 775
DdeI	CTNAG	2 cut(s)	529, 827
DpnI	GATC	7 cut(s)	50, 203, 297, 651, 663, 819, 959
DpnII	GATC	7 cut(s)	48, 201, 295, 649, 661, 817, 957
DraIII	CACNNNGTG	1 cut(s)	598
Eam1104I	CTCTTC	1 cut(s)	218
EarI	CTCTTC	1 cut(s)	218
Eco130I	CCWWGG	1 cut(s)	949
Eco31I	GGTCTC	1 cut(s)	939
Eco57I	CTGAAG	1 cut(s)	156
EcoNI	CCTNNNNNAGG	2 cut(s)	170, 353
EcoO109I	RGGNCCY	2 cut(s)	346, 431
EcoRII	CCWGG	1 cut(s)	197
EcoT14I	CCWWGG	1 cut(s)	949
ErhI	CCWWGG	1 cut(s)	949
Esp3I	CGTCTC	2 cut(s)	199, 252
FaeI	CATG	7 cut(s)	49, 182, 424, 482, 674, 760, 775
FalI	AAGNNNNNCTT	2 cut(s)	773, 805
FatI	CATG	7 cut(s)	45, 178, 420, 478, 670, 756, 771
FbaI	TGATCA	1 cut(s)	48
Fnu4HI	GCNGC	7 cut(s)	23, 98, 264, 675, 694, 909, 973
FokI	GGATG	4 cut(s)	249, 286, 322, 506
Fsp4HI	GCNGC	7 cut(s)	23, 98, 264, 675, 694, 909, 973
FspBI	CTAG	1 cut(s)	350
GlaI	GCGC	1 cut(s)	382
GluI	GCNGC	7 cut(s)	23, 98, 264, 675, 694, 909, 973
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	2 cut(s)	347, 433
HapII	CCGG	1 cut(s)	716
HgaI	GACGC	2 cut(s)	234, 279
HhaI	GCGC	1 cut(s)	383
Hin1II	CATG	7 cut(s)	49, 182, 424, 482, 674, 760, 775
Hin6I	GCGC	1 cut(s)	381
HinP1I	GCGC	1 cut(s)	381
HindIII	AAGCTT	1 cut(s)	40
HinfI	GANTC	8 cut(s)	278, 475, 497, 518, 633, 700, 738, 760
HpaII	CCGG	1 cut(s)	716
Hpy166II	GTNNAC	4 cut(s)	331, 610, 628, 982
Hpy188I	TCNGA	9 cut(s)	206, 283, 295, 300, 438, 835, 874, 925, 962
Hpy188III	TCNNGA	8 cut(s)	46, 540, 665, 710, 735, 764, 790, 903
Hpy8I	GTNNAC	4 cut(s)	331, 610, 628, 982
Hpy99I	CGWCG	1 cut(s)	295
HpyAV	CCTTC	3 cut(s)	349, 450, 563
HpyCH4III	ACNGT	3 cut(s)	373, 577, 646
HpyCH4IV	ACGT	3 cut(s)	53, 327, 786
HpyCH4V	TGCA	8 cut(s)	73, 100, 225, 404, 482, 628, 727, 911
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpyF3I	CTNAG	2 cut(s)	529, 827
HpySE526I	ACGT	3 cut(s)	53, 327, 786
Hsp92II	CATG	7 cut(s)	49, 182, 424, 482, 674, 760, 775
HspAI	GCGC	1 cut(s)	381
Ksp22I	TGATCA	1 cut(s)	48
Kzo9I	GATC	7 cut(s)	48, 201, 295, 649, 661, 817, 957
LmnI	GCTCC	1 cut(s)	300
Lsp1109I	GCAGC	5 cut(s)	34, 84, 661, 680, 895
LweI	GCATC	2 cut(s)	232, 567
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	3 cut(s)	53, 327, 786
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	7 cut(s)	50, 203, 297, 651, 663, 819, 959
MboI	GATC	7 cut(s)	48, 201, 295, 649, 661, 817, 957
MboII	GAAGA	2 cut(s)	149, 205
MflI	RGATCY	1 cut(s)	661
MhlI	GDGCHC	2 cut(s)	537, 630
MluCI	AATT	4 cut(s)	74, 316, 705, 912
MlyI	GAGTC	4 cut(s)	287, 484, 506, 627
MmeI	TCCRAC	3 cut(s)	273, 677, 903
MnlI	CCTC	8 cut(s)	148, 166, 226, 253, 375, 422, 444, 692
MseI	TTAA	2 cut(s)	38, 321
MslI	CAYNNNNRTG	1 cut(s)	419
MspI	CCGG	1 cut(s)	716
MspR9I	CCNGG	2 cut(s)	199, 716
MvaI	CCWGG	1 cut(s)	199
MvnI	CGCG	1 cut(s)	747
MwoI	GCNNNNNNNGC	1 cut(s)	587
NciI	CCSGG	1 cut(s)	716
NdeII	GATC	7 cut(s)	48, 201, 295, 649, 661, 817, 957
NlaIII	CATG	7 cut(s)	49, 182, 424, 482, 674, 760, 775
NlaIV	GGNNCC	1 cut(s)	663
NmuCI	GTSAC	1 cut(s)	157
NspI	RCATGY	1 cut(s)	775
PagI	TCATGA	1 cut(s)	45
PciI	ACATGT	1 cut(s)	771
PfeI	GAWTC	4 cut(s)	518, 700, 738, 760
PflMI	CCANNNNNTGG	1 cut(s)	941
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	7 cut(s)	24, 99, 265, 676, 695, 910, 974
PleI	GAGTC	4 cut(s)	286, 483, 505, 627
PpsI	GAGTC	4 cut(s)	286, 483, 505, 627
Ppu21I	YACGTR	1 cut(s)	328
PscI	ACATGT	1 cut(s)	771
PsiI	TTATAA	1 cut(s)	392
Psp6I	CCWGG	1 cut(s)	197
PspGI	CCWGG	1 cut(s)	197
PspN4I	GGNNCC	1 cut(s)	663
PspPI	GGNCC	2 cut(s)	346, 431
PsuI	RGATCY	1 cut(s)	661
RsaI	GTAC	3 cut(s)	326, 680, 776
RsaNI	GTAC	3 cut(s)	325, 679, 775
RseI	CAYNNNNRTG	1 cut(s)	419
SaqAI	TTAA	2 cut(s)	38, 321
SatI	GCNGC	7 cut(s)	23, 98, 264, 675, 694, 909, 973
Sau3AI	GATC	7 cut(s)	48, 201, 295, 649, 661, 817, 957
Sau96I	GGNCC	2 cut(s)	346, 431
SchI	GAGTC	4 cut(s)	287, 484, 506, 627
ScrFI	CCNGG	2 cut(s)	199, 716
SduI	GDGCHC	2 cut(s)	537, 630
SfaNI	GCATC	2 cut(s)	232, 567
SmiMI	CAYNNNNRTG	1 cut(s)	419
Sse9I	AATT	4 cut(s)	74, 316, 705, 912
SsiI	CCGC	5 cut(s)	189, 263, 745, 973, 985
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	2 cut(s)	197, 714
StyI	CCWWGG	1 cut(s)	949
TaaI	ACNGT	3 cut(s)	373, 577, 646
TaiI	ACGT	3 cut(s)	56, 330, 789
TaqI	TCGA	7 cut(s)	541, 551, 561, 604, 741, 816, 902
TasI	AATT	4 cut(s)	74, 316, 705, 912
TatI	WGTACW	1 cut(s)	774
TauI	GCSGC	2 cut(s)	266, 975
TfiI	GAWTC	4 cut(s)	518, 700, 738, 760
Tru1I	TTAA	2 cut(s)	38, 321
Tru9I	TTAA	2 cut(s)	38, 321
TscAI	CASTG	2 cut(s)	617, 729
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	5 cut(s)	22, 97, 674, 693, 908
Tsp45I	GTSAC	1 cut(s)	157
TspDTI	ATGAA	2 cut(s)	34, 461
TspGWI	ACGGA	1 cut(s)	586
TspRI	CASTG	2 cut(s)	617, 729
Van91I	CCANNNNNTGG	1 cut(s)	941
VneI	GTGCAC	1 cut(s)	626
XagI	CCTNNNNNAGG	2 cut(s)	170, 353
XapI	RAATTY	1 cut(s)	316
XceI	RCATGY	1 cut(s)	775
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.