RchiOBHm_Chr3g0482531

Protein N-terminal glutamine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0014502
Physical Location & Seq
Reverse (-)
28573823 .. 28577619
3797 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 681 bp
ATGACGACCTCAAAATTGGAAGCCAGCACTAGCACTGTGGAAGCTTCGCAATTCCAGCACACCCCTTTTTACTGTGAGGAGAATGTGTACTTGCTTTGCAAGGAATTGAGCAAAAAGGGAATCGCAGATGAAAAAAGCTCTGATCTTTTTGTGGTTTTGATTTCCAATGAGAAGAAACAGATACCATTGTGGCATCAAAAGGCGAGCAACCGAGCAGATGGAGTTGTTCTCTGGGATTATCATGTCATTTGCGTACAGAGAAAAGTTGGTGGAGGTGACTCACCCTCACAGCATTTAGTGTGGGATTTGGATTCAACTCTTTCGTTTCCTTGTGATTTAGCAACTTATGTCTCCGAAACCATCCGCCCCACATTTCAGACCTTTCCTGAATTCCAGAGGTATTTCCGGATCGTGCATGCCCCAATATTCCTCCGTAACTTTGCATCTGATAGAAGGCACATGAAAGATTCTCTTGGCGAATGGCTTCATCAGCCTCCTCTATATGAGCCGATTGTTTCTGAAGATGGAACTGTACATAACCTGAATGACTACCTTGACATCAGGGCTACAGATGTTGTGAAGGAGGCAGGTCATGATATGACCGATCCAGTTTTTACCCAAAAGCTTGGTGTGGTTGTAGGTGAAAACCAACTGGAGGAATTCTTTTCCCAAATTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Nt_Gln_amidase

Protein Analysis

226

Amino Acids

25.85

Weight (kDa)

5.22

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Nt_Gln_amidase PF09764 20 - 222 1.2e-66 N-terminal glutamine amidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014502)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41760
fragaria_vesca FvH4_6g23850
malus_domestica MD12G1074200.v1.1
prunus_persica Prupe.7G059700_v2.0.a1
pyrus_communis pycom12g06400
rosa_chinensis RchiOBHm_Chr3g0482531
rosa_laevigata RLG00000023347
rosa_multiflora Rmu_sc0002969.1_g000011 Rmu_sc0005613.1_g000003
rosa_roxburghii Rroxscaffold_6G00399310
rosa_rugosa Rorug03G0196700
rosa_samantha Rh3AG248200 Rh3BG283200 Rh3CG279800 Rh3DG276100
rosa_wichuraiana Rw0G013140 Rw3G022350

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 578
AccIII TCCGGA 1 cut(s) 405
AciI CCGC 1 cut(s) 364
AclWI GGATC 2 cut(s) 416, 599
AcsI RAATTY 3 cut(s) 389, 659, 672
AcuI CTGAAG 1 cut(s) 540
AfaI GTAC 3 cut(s) 89, 255, 534
AfiI CCNNNNNNNGG 1 cut(s) 655
AgsI TTSAA 1 cut(s) 315
AluBI AGCT 3 cut(s) 44, 138, 625
AluI AGCT 3 cut(s) 44, 138, 625
Alw26I GTCTC 1 cut(s) 355
AlwI GGATC 2 cut(s) 416, 599
Aor13HI TCCGGA 1 cut(s) 405
ApoI RAATTY 3 cut(s) 389, 659, 672
Asp700I GAANNNNTTC 1 cut(s) 483
AsuHPI GGTGA 3 cut(s) 273, 287, 653
BaeI ACNNNNGTAYC 2 cut(s) 173, 206
BccI CCATC 3 cut(s) 212, 368, 518
BcoDI GTCTC 1 cut(s) 355
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 1 cut(s) 567
BfuAI ACCTGC 1 cut(s) 578
BmsI GCATC 2 cut(s) 202, 452
BplI GAGNNNNNCTC 2 cut(s) 213, 245
BpmI CTGGAG 1 cut(s) 674
BsaWI WCCGGW 1 cut(s) 405
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 655
Bse1I ACTGG 2 cut(s) 608, 657
BseAI TCCGGA 1 cut(s) 405
BseGI GGATG 1 cut(s) 360
BseLI CCNNNNNNNGG 1 cut(s) 655
BseNI ACTGG 2 cut(s) 608, 657
BseRI GAGGAG 2 cut(s) 92, 486
BsiSI CCGG 1 cut(s) 406
BslI CCNNNNNNNGG 1 cut(s) 655
BsmAI GTCTC 1 cut(s) 355
Bsp13I TCCGGA 1 cut(s) 405
Bsp1407I TGTACA 1 cut(s) 532
Bsp143I GATC 3 cut(s) 142, 408, 604
BspACI CCGC 1 cut(s) 364
BspEI TCCGGA 1 cut(s) 405
BspHI TCATGA 1 cut(s) 592
BspMI ACCTGC 1 cut(s) 578
BspPI GGATC 2 cut(s) 416, 599
BsrGI TGTACA 1 cut(s) 532
BsrI ACTGG 2 cut(s) 608, 657
BssMI GATC 3 cut(s) 142, 408, 604
Bst4CI ACNGT 3 cut(s) 37, 74, 532
BstAUI TGTACA 1 cut(s) 532
BstC8I GCNNGC 3 cut(s) 25, 205, 417
BstF5I GGATG 1 cut(s) 360
BstKTI GATC 3 cut(s) 145, 411, 607
BstMAI GTCTC 1 cut(s) 355
BstMBI GATC 3 cut(s) 142, 408, 604
BstMWI GCNNNNNNNGC 2 cut(s) 55, 490
BstNSI RCATGY 1 cut(s) 419
BstSFI CTRYAG 1 cut(s) 567
BstXI CCANNNNNNTGG 1 cut(s) 626
BtsCI GGATG 1 cut(s) 360
BtsIMutI CAGTG 1 cut(s) 33
BveI ACCTGC 1 cut(s) 578
Cac8I GCNNGC 3 cut(s) 25, 205, 417
CciI TCATGA 1 cut(s) 592
Csp6I GTAC 3 cut(s) 88, 254, 533
CviAII CATG 4 cut(s) 242, 416, 460, 593
CviJI RGCY 8 cut(s) 23, 44, 138, 484, 493, 508, 566, 625
CviKI_1 RGCY 8 cut(s) 23, 44, 138, 484, 493, 508, 566, 625
CviQI GTAC 3 cut(s) 88, 254, 533
DpnI GATC 3 cut(s) 144, 410, 606
DpnII GATC 3 cut(s) 142, 408, 604
EciI GGCGGA 1 cut(s) 353
Eco57I CTGAAG 1 cut(s) 540
EcoRI GAATTC 2 cut(s) 389, 659
FaeI CATG 4 cut(s) 245, 419, 463, 596
FaiI YATR 9 cut(s) 243, 348, 417, 461, 502, 504, 537, 594, 599
FalI AAGNNNNNCTT 2 cut(s) 456, 488
FatI CATG 4 cut(s) 241, 415, 459, 592
FokI GGATG 1 cut(s) 347
FspBI CTAG 1 cut(s) 30
GsuI CTGGAG 1 cut(s) 674
HapII CCGG 1 cut(s) 406
Hin1II CATG 4 cut(s) 245, 419, 463, 596
HindIII AAGCTT 2 cut(s) 42, 623
HinfI GANTC 4 cut(s) 120, 278, 311, 467
HpaII CCGG 1 cut(s) 406
HphI GGTGA 3 cut(s) 273, 287, 653
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 5 cut(s) 142, 355, 378, 448, 520
Hpy188III TCNNGA 4 cut(s) 386, 394, 406, 593
Hpy8I GTNNAC 1 cut(s) 88
HpyAV CCTTC 2 cut(s) 447, 574
HpyCH4III ACNGT 3 cut(s) 37, 74, 532
HpyCH4V TGCA 3 cut(s) 99, 415, 443
HpyF10VI GCNNNNNNNGC 2 cut(s) 55, 490
Hsp92II CATG 4 cut(s) 245, 419, 463, 596
Kpn2I TCCGGA 1 cut(s) 405
Kzo9I GATC 3 cut(s) 142, 408, 604
LweI GCATC 2 cut(s) 202, 452
MaeI CTAG 1 cut(s) 30
MaeIII GTNAC 2 cut(s) 275, 434
MalI GATC 3 cut(s) 144, 410, 606
MboI GATC 3 cut(s) 142, 408, 604
MboII GAAGA 2 cut(s) 184, 533
MluCI AATT 6 cut(s) 14, 50, 104, 389, 659, 672
MlyI GAGTC 1 cut(s) 272
MroI TCCGGA 1 cut(s) 405
MroXI GAANNNNTTC 1 cut(s) 483
MspI CCGG 1 cut(s) 406
MwoI GCNNNNNNNGC 2 cut(s) 55, 490
NdeII GATC 3 cut(s) 142, 408, 604
NlaIII CATG 4 cut(s) 245, 419, 463, 596
NmuCI GTSAC 1 cut(s) 275
NspI RCATGY 1 cut(s) 419
PaeI GCATGC 1 cut(s) 419
PagI TCATGA 1 cut(s) 592
PdmI GAANNNNTTC 1 cut(s) 483
PfeI GAWTC 3 cut(s) 120, 311, 467
PleI GAGTC 1 cut(s) 272
PpsI GAGTC 1 cut(s) 272
RsaI GTAC 3 cut(s) 89, 255, 534
RsaNI GTAC 3 cut(s) 88, 254, 533
Sau3AI GATC 3 cut(s) 142, 408, 604
SchI GAGTC 1 cut(s) 272
SfaNI GCATC 2 cut(s) 202, 452
SfcI CTRYAG 1 cut(s) 567
SphI GCATGC 1 cut(s) 419
Sse9I AATT 6 cut(s) 14, 50, 104, 389, 659, 672
SsiI CCGC 1 cut(s) 364
SspI AATATT 1 cut(s) 426
SspMI CTAG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 37, 74, 532
TaqII GACCGA 1 cut(s) 617
TasI AATT 6 cut(s) 14, 50, 104, 389, 659, 672
TatI WGTACW 2 cut(s) 87, 532
TfiI GAWTC 3 cut(s) 120, 311, 467
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 275
Tsp45I GTSAC 1 cut(s) 275
TspDTI ATGAA 3 cut(s) 144, 476, 476
TspGWI ACGGA 1 cut(s) 422
TspRI CASTG 1 cut(s) 40
XapI RAATTY 3 cut(s) 389, 659, 672
XceI RCATGY 1 cut(s) 419
XmnI GAANNNNTTC 1 cut(s) 483
XspI CTAG 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.