RchiOBHm_Chr3g0482541

DTW domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013032
Physical Location & Seq
Forward (+)
28577621 .. 28578484
864 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 798 bp
ATGGAAGCTGAAGACGACGAATTCGAAACCGCCTACAACGCCACCTCTTCGCCGCCGCGGAGGCCGAGGTCCATCTGCGGCAACTGCAACCGGCCCGGCCCAGTCTGCCTCTGCCAGTCTCTCCCGGCCCAGCCCATCCCAACCCAAACGCAAATCATAATCCTCCACCATCCTCACGAGGCGCAGCACAAGCTGTCCACCACGCCGGTCCTGACAAAATGCCTGGCCAACTCCACCGCCATCGTCAGCCGCCGCCTCAAGCCGGGCCTGTCCCCGCTCCTCGACCAATCACCTTCCGCCATCTACCTCTTCCCGCCCTCGAAATCCTCGCCGTCCGTCAGCTTATCCCGTCTCCGGATCCCCAGCCAGTCGCCGGTGGTGGTCGTAGCTTTCGACGCGACGTGGAAGCACGCGAAGGAGATGGTGAGGGCGAGCGAGGGGTTCCTGTCGAAATTCGCGAGGCGGGTGAGTTTGGATGTGGATGAGGATGTGAGGGGAGGGAGCATCTACGACTCGGAGTTGATTCTGAGGCAGGAGCCGTTTGGTGGGTGCGTGAGTACCATGGAGGCCGTGGCCAGGGCTCTGAGAGTGCTCGAGCCCAATGGGCTGGAGATTGAGAGCAAGCTTATTCGGGTTTTGAGGGACATGGTGGCGCTGCAGGCGGGTTTTCTTAAGCCCGTGAAGCACAGGCCCAAGTTGTTGAAGAAAGGGAAGGAGGAACAGAGGCCCAAGAATGAGACTCACTCTCATGAGAGTTCCCTGATAGTTGGTGAAGGTCAGTCACTCAGCTTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DTW

Protein Analysis

265

Amino Acids

29.14

Weight (kDa)

9.05

Isoelectric Point (pI)

64.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DTW PF03942 23 - 220 5.5e-39 DTW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013032)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41750
fragaria_vesca FvH4_6g23860
prunus_persica Prupe.7G059600_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0482541
rosa_laevigata RLG00000023346
rosa_multiflora Rmu_sc0002969.1_g000012 Rmu_sc0005613.1_g000004
rosa_roxburghii Rroxscaffold_6G00399180 Rroxscaffold_6G00399300
rosa_rugosa Rorug03G0196800
rosa_samantha Rh3AG248300 Rh3BG283300 Rh3CG279900 Rh3DG276200 Rh3DG276300 Rh4BG263400
rosa_wichuraiana Rw0G013130 Rw3G022360

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 277
AccII CGCG 4 cut(s) 58, 398, 413, 458
AccIII TCCGGA 1 cut(s) 354
AclWI GGATC 2 cut(s) 352, 365
AcoI YGGCCR 2 cut(s) 225, 573
AcsI RAATTY 2 cut(s) 20, 452
AcuI CTGAAG 1 cut(s) 30
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 5 cut(s) 262, 354, 373, 545, 576
AflII CTTAAG 1 cut(s) 671
AgsI TTSAA 1 cut(s) 703
AjiI CACGTC 1 cut(s) 402
AjnI CCWGG 2 cut(s) 222, 575
AluBI AGCT 6 cut(s) 8, 193, 342, 389, 625, 789
AluI AGCT 6 cut(s) 8, 193, 342, 389, 625, 789
Alw21I GWGCWC 1 cut(s) 594
Alw26I GTCTC 3 cut(s) 123, 356, 731
AlwI GGATC 2 cut(s) 352, 365
Ama87I CYCGRG 1 cut(s) 593
Aor13HI TCCGGA 1 cut(s) 354
ApeKI GCWGC 2 cut(s) 184, 655
ApoI RAATTY 2 cut(s) 20, 452
ArsI GACNNNNNNTTYG 1 cut(s) 37
AspLEI GCGC 2 cut(s) 184, 655
AspS9I GGNCC 8 cut(s) 69, 93, 98, 127, 208, 265, 690, 726
AsuC2I CCSGG 3 cut(s) 96, 125, 264
AsuHPI GGTGA 4 cut(s) 282, 436, 478, 782
AsuII TTCGAA 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 593
AvaII GGWCC 2 cut(s) 69, 208
BalI TGGCCA 2 cut(s) 227, 575
BamHI GGATCC 1 cut(s) 357
BanII GRGCYC 2 cut(s) 583, 600
BauI CACGAG 1 cut(s) 176
BbsI GAAGAC 1 cut(s) 18
Bbv12I GWGCWC 1 cut(s) 594
BbvI GCAGC 2 cut(s) 196, 642
BccI CCATC 6 cut(s) 80, 143, 177, 248, 308, 415
BceAI ACGGC 3 cut(s) 316, 523, 554
BciT130I CCWGG 2 cut(s) 224, 577
BcnI CCSGG 3 cut(s) 96, 125, 264
BcoDI GTCTC 3 cut(s) 123, 356, 731
BfmI CTRYAG 1 cut(s) 656
BfoI RGCGCY 1 cut(s) 656
BfrI CTTAAG 1 cut(s) 671
BglI GCCNNNNNGGC 2 cut(s) 61, 604
BisI GCNGC 7 cut(s) 53, 56, 79, 185, 250, 253, 656
BlsI GCNGC 7 cut(s) 54, 57, 80, 186, 251, 254, 657
Bme1390I CCNGG 5 cut(s) 96, 125, 224, 264, 577
Bme18I GGWCC 2 cut(s) 69, 208
BmeT110I CYCGRG 1 cut(s) 593
BmgBI CACGTC 1 cut(s) 402
BmgT120I GGNCC 8 cut(s) 69, 93, 98, 127, 208, 265, 690, 726
BmiI GGNNCC 3 cut(s) 359, 443, 537
BmrFI CCNGG 5 cut(s) 96, 125, 224, 264, 577
BmrI ACTGGG 1 cut(s) 95
BmsI GCATC 1 cut(s) 513
BmuI ACTGGG 1 cut(s) 95
BpiI GAAGAC 1 cut(s) 18
BplI GAGNNNNNCTC 2 cut(s) 728, 760
BpmI CTGGAG 1 cut(s) 629
Bpu14I TTCGAA 1 cut(s) 24
BpuEI CTTGAG 1 cut(s) 242
BpuMI CCSGG 3 cut(s) 96, 125, 264
BsaJI CCNNGG 5 cut(s) 56, 65, 561, 570, 576
BsaWI WCCGGW 1 cut(s) 354
Bsc4I CCNNNNNNNGG 5 cut(s) 262, 354, 373, 545, 576
Bse118I RCCGGY 3 cut(s) 90, 205, 373
Bse1I ACTGG 3 cut(s) 101, 115, 367
BseAI TCCGGA 1 cut(s) 354
BseBI CCWGG 2 cut(s) 224, 577
BseDI CCNNGG 5 cut(s) 56, 65, 561, 570, 576
BseGI GGATG 5 cut(s) 135, 169, 481, 487, 493
BseLI CCNNNNNNNGG 5 cut(s) 262, 354, 373, 545, 576
BseMII CTCAG 2 cut(s) 518, 575
BseNI ACTGG 3 cut(s) 101, 115, 367
BseRI GAGGAG 1 cut(s) 269
BseXI GCAGC 2 cut(s) 196, 642
BseYI CCCAGC 2 cut(s) 129, 362
Bsh1236I CGCG 4 cut(s) 58, 398, 413, 458
BsiHKAI GWGCWC 1 cut(s) 594
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 7 cut(s) 91, 96, 125, 206, 263, 355, 374
BslFI GGGAC 2 cut(s) 256, 656
BslI CCNNNNNNNGG 5 cut(s) 262, 354, 373, 545, 576
BsmAI GTCTC 3 cut(s) 123, 356, 731
BsmBI CGTCTC 1 cut(s) 356
BsmFI GGGAC 2 cut(s) 256, 656
BsoBI CYCGRG 1 cut(s) 593
Bsp119I TTCGAA 1 cut(s) 24
Bsp1286I GDGCHC 3 cut(s) 583, 594, 600
Bsp13I TCCGGA 1 cut(s) 354
Bsp143I GATC 1 cut(s) 357
Bsp19I CCATGG 1 cut(s) 561
Bsp68I TCGCGA 1 cut(s) 458
BspCNI CTCAG 3 cut(s) 519, 576, 798
BspEI TCCGGA 1 cut(s) 354
BspFNI CGCG 4 cut(s) 58, 398, 413, 458
BspHI TCATGA 1 cut(s) 748
BspLI GGNNCC 3 cut(s) 359, 443, 537
BspMAI CTGCAG 1 cut(s) 660
BspPI GGATC 2 cut(s) 352, 365
BspT104I TTCGAA 1 cut(s) 24
BspTI CTTAAG 1 cut(s) 671
BsrBI CCGCTC 1 cut(s) 277
BsrFI RCCGGY 3 cut(s) 90, 205, 373
BsrI ACTGG 3 cut(s) 101, 115, 367
BssAI RCCGGY 3 cut(s) 90, 205, 373
BssECI CCNNGG 5 cut(s) 56, 65, 561, 570, 576
BssMI GATC 1 cut(s) 357
BssSI CACGAG 1 cut(s) 176
BssT1I CCWWGG 1 cut(s) 561
Bst2BI CACGAG 1 cut(s) 176
Bst2UI CCWGG 2 cut(s) 224, 577
Bst6I CTCTTC 2 cut(s) 52, 314
BstAFI CTTAAG 1 cut(s) 671
BstBI TTCGAA 1 cut(s) 24
BstC8I GCNNGC 4 cut(s) 411, 433, 623, 660
BstDEI CTNAG 3 cut(s) 527, 584, 785
BstDSI CCRYGG 3 cut(s) 56, 561, 570
BstF5I GGATG 5 cut(s) 135, 169, 481, 487, 493
BstFNI CGCG 4 cut(s) 58, 398, 413, 458
BstH2I RGCGCY 1 cut(s) 656
BstHHI GCGC 2 cut(s) 184, 655
BstKTI GATC 1 cut(s) 360
BstMAI GTCTC 3 cut(s) 123, 356, 731
BstMBI GATC 1 cut(s) 357
BstMWI GCNNNNNNNGC 9 cut(s) 38, 61, 84, 105, 190, 395, 604, 659, 682
BstNI CCWGG 2 cut(s) 224, 577
BstSCI CCNGG 5 cut(s) 94, 123, 222, 262, 575
BstSFI CTRYAG 1 cut(s) 656
BstUI CGCG 4 cut(s) 58, 398, 413, 458
BstV1I GCAGC 2 cut(s) 196, 642
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 1 cut(s) 357
BstXI CCANNNNNNTGG 1 cut(s) 607
BstYI RGATCY 1 cut(s) 357
BtgI CCRYGG 3 cut(s) 56, 561, 570
BtrI CACGTC 1 cut(s) 402
BtsCI GGATG 5 cut(s) 135, 169, 481, 487, 493
BtuMI TCGCGA 1 cut(s) 458
Cac8I GCNNGC 4 cut(s) 411, 433, 623, 660
CciI TCATGA 1 cut(s) 748
CfoI GCGC 2 cut(s) 184, 655
Cfr10I RCCGGY 3 cut(s) 90, 205, 373
Cfr13I GGNCC 8 cut(s) 69, 93, 98, 127, 208, 265, 690, 726
Cfr42I CCGCGG 1 cut(s) 59
CseI GACGC 1 cut(s) 404
Csp6I GTAC 1 cut(s) 558
CviAII CATG 3 cut(s) 562, 646, 749
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 3 cut(s) 527, 584, 785
DpnI GATC 1 cut(s) 359
DpnII GATC 1 cut(s) 357
EaeI YGGCCR 2 cut(s) 225, 573
Eam1104I CTCTTC 2 cut(s) 52, 314
EarI CTCTTC 2 cut(s) 52, 314
EciI GGCGGA 1 cut(s) 286
Eco130I CCWWGG 1 cut(s) 561
Eco24I GRGCYC 2 cut(s) 583, 600
Eco47I GGWCC 2 cut(s) 69, 208
Eco57I CTGAAG 1 cut(s) 30
Eco88I CYCGRG 1 cut(s) 593
EcoRI GAATTC 1 cut(s) 20
EcoRII CCWGG 2 cut(s) 222, 575
EcoT14I CCWWGG 1 cut(s) 561
EcoT38I GRGCYC 2 cut(s) 583, 600
ErhI CCWWGG 1 cut(s) 561
Esp3I CGTCTC 1 cut(s) 356
FaeI CATG 3 cut(s) 565, 649, 752
FaiI YATR 4 cut(s) 158, 563, 647, 750
FaqI GGGAC 2 cut(s) 256, 656
FatI CATG 3 cut(s) 561, 645, 748
FauI CCCGC 4 cut(s) 282, 321, 456, 655
Fnu4HI GCNGC 7 cut(s) 53, 56, 79, 185, 250, 253, 656
FokI GGATG 5 cut(s) 122, 156, 488, 494, 500
FriOI GRGCYC 2 cut(s) 583, 600
Fsp4HI GCNGC 7 cut(s) 53, 56, 79, 185, 250, 253, 656
GlaI GCGC 2 cut(s) 183, 654
GluI GCNGC 7 cut(s) 53, 56, 79, 185, 250, 253, 656
GsaI CCCAGC 2 cut(s) 133, 366
GsuI CTGGAG 1 cut(s) 629
HaeII RGCGCY 1 cut(s) 656
HapII CCGG 7 cut(s) 91, 96, 125, 206, 263, 355, 374
HgaI GACGC 1 cut(s) 404
HhaI GCGC 2 cut(s) 184, 655
Hin1II CATG 3 cut(s) 565, 649, 752
Hin6I GCGC 2 cut(s) 182, 653
HinP1I GCGC 2 cut(s) 182, 653
HindIII AAGCTT 1 cut(s) 623
HinfI GANTC 3 cut(s) 512, 523, 739
HpaII CCGG 7 cut(s) 91, 96, 125, 206, 263, 355, 374
HphI GGTGA 4 cut(s) 282, 436, 478, 782
Hpy166II GTNNAC 1 cut(s) 198
Hpy188I TCNGA 3 cut(s) 517, 528, 585
Hpy188III TCNNGA 5 cut(s) 176, 211, 355, 457, 749
Hpy8I GTNNAC 1 cut(s) 198
Hpy99I CGWCG 3 cut(s) 20, 398, 403
HpyAV CCTTC 4 cut(s) 303, 409, 706, 767
HpyCH4IV ACGT 1 cut(s) 401
HpyCH4V TGCA 2 cut(s) 87, 658
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 61, 84, 105, 190, 395, 604, 659, 682
HpyF3I CTNAG 3 cut(s) 527, 584, 785
HpySE526I ACGT 1 cut(s) 401
Hsp92II CATG 3 cut(s) 565, 649, 752
HspAI GCGC 2 cut(s) 182, 653
Kpn2I TCCGGA 1 cut(s) 354
KspI CCGCGG 1 cut(s) 59
Kzo9I GATC 1 cut(s) 357
LmnI GCTCC 3 cut(s) 282, 501, 535
Lsp1109I GCAGC 2 cut(s) 196, 642
LweI GCATC 1 cut(s) 513
MaeII ACGT 1 cut(s) 401
MaeIII GTNAC 1 cut(s) 780
MalI GATC 1 cut(s) 359
MbiI CCGCTC 1 cut(s) 277
MboI GATC 1 cut(s) 357
MboII GAAGA 4 cut(s) 23, 39, 301, 715
MflI RGATCY 1 cut(s) 357
MhlI GDGCHC 3 cut(s) 583, 594, 600
MlsI TGGCCA 2 cut(s) 227, 575
MluCI AATT 2 cut(s) 20, 452
MluNI TGGCCA 2 cut(s) 227, 575
MlyI GAGTC 2 cut(s) 506, 733
Mox20I TGGCCA 2 cut(s) 227, 575
MroI TCCGGA 1 cut(s) 354
MscI TGGCCA 2 cut(s) 227, 575
MseI TTAA 1 cut(s) 672
MslI CAYNNNNRTG 1 cut(s) 747
Msp20I TGGCCA 2 cut(s) 227, 575
MspA1I CMGCKG 1 cut(s) 58
MspCI CTTAAG 1 cut(s) 671
MspI CCGG 7 cut(s) 91, 96, 125, 206, 263, 355, 374
MspR9I CCNGG 5 cut(s) 96, 125, 224, 264, 577
MvaI CCWGG 2 cut(s) 224, 577
MvnI CGCG 4 cut(s) 58, 398, 413, 458
MwoI GCNNNNNNNGC 9 cut(s) 38, 61, 84, 105, 190, 395, 604, 659, 682
NciI CCSGG 3 cut(s) 96, 125, 264
NcoI CCATGG 1 cut(s) 561
NdeII GATC 1 cut(s) 357
NlaIII CATG 3 cut(s) 565, 649, 752
NlaIV GGNNCC 3 cut(s) 359, 443, 537
NmeAIII GCCGAG 1 cut(s) 90
NmuCI GTSAC 1 cut(s) 780
NruI TCGCGA 1 cut(s) 458
NspV TTCGAA 1 cut(s) 24
PaeR7I CTCGAG 1 cut(s) 593
PagI TCATGA 1 cut(s) 748
PcsI WCGNNNNNNNCGW 3 cut(s) 21, 390, 455
PfeI GAWTC 1 cut(s) 523
PkrI GCNGC 7 cut(s) 54, 57, 80, 186, 251, 254, 657
PleI GAGTC 2 cut(s) 506, 733
PpsI GAGTC 2 cut(s) 506, 733
Psp6I CCWGG 2 cut(s) 222, 575
PspFI CCCAGC 2 cut(s) 129, 362
PspGI CCWGG 2 cut(s) 222, 575
PspN4I GGNNCC 3 cut(s) 359, 443, 537
PspPI GGNCC 8 cut(s) 69, 93, 98, 127, 208, 265, 690, 726
PspXI VCTCGAGB 1 cut(s) 593
PstI CTGCAG 1 cut(s) 660
PsuI RGATCY 1 cut(s) 357
RruI TCGCGA 1 cut(s) 458
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
RseI CAYNNNNRTG 1 cut(s) 747
SacII CCGCGG 1 cut(s) 59
SaqAI TTAA 1 cut(s) 672
SatI GCNGC 7 cut(s) 53, 56, 79, 185, 250, 253, 656
Sau3AI GATC 1 cut(s) 357
Sau96I GGNCC 8 cut(s) 69, 93, 98, 127, 208, 265, 690, 726
SchI GAGTC 2 cut(s) 506, 733
ScrFI CCNGG 5 cut(s) 96, 125, 224, 264, 577
SduI GDGCHC 3 cut(s) 583, 594, 600
SfaNI GCATC 1 cut(s) 513
SfcI CTRYAG 1 cut(s) 656
Sfr274I CTCGAG 1 cut(s) 593
Sfr303I CCGCGG 1 cut(s) 59
SfuI TTCGAA 1 cut(s) 24
SgrAI CRCCGGYG 1 cut(s) 373
SgrBI CCGCGG 1 cut(s) 59
SinI GGWCC 2 cut(s) 69, 208
SlaI CTCGAG 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 747
SmlI CTYRAG 3 cut(s) 257, 593, 671
SmoI CTYRAG 3 cut(s) 257, 593, 671
Sse9I AATT 2 cut(s) 20, 452
StyD4I CCNGG 5 cut(s) 94, 123, 222, 262, 575
StyI CCWWGG 1 cut(s) 561
TaiI ACGT 1 cut(s) 404
TaqI TCGA 6 cut(s) 24, 282, 320, 393, 449, 594
TasI AATT 2 cut(s) 20, 452
TauI GCSGC 5 cut(s) 55, 58, 81, 252, 255
TfiI GAWTC 1 cut(s) 523
Tru1I TTAA 1 cut(s) 672
Tru9I TTAA 1 cut(s) 672
TseFI GTSAC 1 cut(s) 780
TseI GCWGC 2 cut(s) 184, 655
Tsp45I GTSAC 1 cut(s) 780
TspGWI ACGGA 1 cut(s) 325
Vha464I CTTAAG 1 cut(s) 671
VpaK11BI GGWCC 2 cut(s) 69, 208
XapI RAATTY 2 cut(s) 20, 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 568
XhoI CTCGAG 1 cut(s) 593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.