Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G03820 |
| fragaria_vesca | FvH4_1g26190 FvH4_1g26190 FvH4_4g00390 FvH4_4g00390 |
| prunus_persica | Prupe.4G217800_v2.0.a1 Prupe.4G217800_v2.0.a1 Prupe.4G273200_v2.0.a1 |
| pyrus_communis | pycom04g00430 |
| rosa_chinensis | RchiOBHm_Chr3g0485681 RchiOBHm_Chr3g0485701 RchiOBHm_Chr4g0385341 |
| rosa_laevigata | RLG00000010236 RLG00000023132 |
| rosa_multiflora | Rmu_sc0001259.1_g000008 Rmu_sc0003005.1_g000028 |
| rosa_roxburghii | Rroxscaffold_5G00333270 Rroxscaffold_6G00396510 Rroxscaffold_6G00396820 Rroxscaffold_6G00396840 |
| rosa_rugosa | Rorug03G0220700 Rorug03G0300500 |
| rosa_samantha | Rh3AG269900 Rh3BG305700 Rh3CG303800 Rh3DG300100 Rh4AG004200 Rh4BG003600 Rh4CG005300 Rh4DG003800 |
| rosa_wichuraiana | Rw3G024040 Rw4G000480 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 79 |
| AccI | GTMKAC | 2 cut(s) | 392, 725 |
| AccII | CGCG | 1 cut(s) | 1307 |
| AciI | CCGC | 1 cut(s) | 1323 |
| AclWI | GGATC | 2 cut(s) | 338, 854 |
| AcsI | RAATTY | 2 cut(s) | 299, 626 |
| AcuI | CTGAAG | 7 cut(s) | 141, 156, 284, 557, 1005, 1253, 1354 |
| AfaI | GTAC | 4 cut(s) | 51, 477, 709, 1391 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1279 |
| AgsI | TTSAA | 5 cut(s) | 274, 740, 1072, 1345, 1378 |
| AjnI | CCWGG | 3 cut(s) | 582, 690, 1105 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 978, 1010 |
| AleI | CACNNNNGTG | 1 cut(s) | 833 |
| AluBI | AGCT | 9 cut(s) | 238, 473, 481, 529, 682, 915, 1019, 1215, 1264 |
| AluI | AGCT | 9 cut(s) | 238, 473, 481, 529, 682, 915, 1019, 1215, 1264 |
| Alw26I | GTCTC | 1 cut(s) | 253 |
| AlwI | GGATC | 2 cut(s) | 338, 854 |
| AoxI | GGCC | 2 cut(s) | 1090, 1320 |
| ApeKI | GCWGC | 9 cut(s) | 45, 89, 193, 238, 470, 526, 548, 551, 1530 |
| ApoI | RAATTY | 2 cut(s) | 299, 626 |
| AspLEI | GCGC | 4 cut(s) | 117, 1230, 1307, 1309 |
| AspS9I | GGNCC | 2 cut(s) | 580, 812 |
| AsuC2I | CCSGG | 1 cut(s) | 938 |
| AvaII | GGWCC | 2 cut(s) | 580, 812 |
| BaeGI | GKGCMC | 1 cut(s) | 1461 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 571, 604 |
| BanI | GGYRCC | 1 cut(s) | 79 |
| BauI | CACGAG | 1 cut(s) | 1251 |
| BbvI | GCAGC | 8 cut(s) | 57, 76, 205, 225, 482, 535, 538, 538 |
| BccI | CCATC | 5 cut(s) | 571, 967, 1101, 1420, 1430 |
| BceAI | ACGGC | 1 cut(s) | 741 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 220, 254 |
| BciT130I | CCWGG | 3 cut(s) | 584, 692, 1107 |
| BciVI | GTATCC | 1 cut(s) | 1397 |
| BclI | TGATCA | 1 cut(s) | 895 |
| BcnI | CCSGG | 1 cut(s) | 938 |
| BcoDI | GTCTC | 1 cut(s) | 253 |
| BfaI | CTAG | 6 cut(s) | 224, 795, 1163, 1181, 1274, 1310 |
| BfmI | CTRYAG | 1 cut(s) | 816 |
| BfoI | RGCGCY | 1 cut(s) | 1231 |
| BfuI | GTATCC | 1 cut(s) | 1397 |
| BglII | AGATCT | 2 cut(s) | 791, 1348 |
| BmcAI | AGTACT | 1 cut(s) | 709 |
| Bme1390I | CCNGG | 4 cut(s) | 584, 692, 938, 1107 |
| Bme18I | GGWCC | 2 cut(s) | 580, 812 |
| BmgT120I | GGNCC | 2 cut(s) | 580, 812 |
| BmiI | GGNNCC | 2 cut(s) | 30, 81 |
| BmrFI | CCNGG | 4 cut(s) | 584, 692, 938, 1107 |
| BmsI | GCATC | 5 cut(s) | 880, 1012, 1279, 1433, 1435 |
| BpmI | CTGGAG | 2 cut(s) | 542, 639 |
| BpuEI | CTTGAG | 2 cut(s) | 401, 892 |
| BpuMI | CCSGG | 1 cut(s) | 938 |
| Bsa29I | ATCGAT | 1 cut(s) | 591 |
| BsaBI | GATNNNNATC | 1 cut(s) | 894 |
| BsaJI | CCNNGG | 7 cut(s) | 75, 583, 690, 783, 1105, 1106, 1278 |
| BsaWI | WCCGGW | 1 cut(s) | 609 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 604, 634 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1279 |
| Bse1I | ACTGG | 3 cut(s) | 460, 555, 656 |
| Bse3DI | GCAATG | 2 cut(s) | 166, 846 |
| Bse8I | GATNNNNATC | 1 cut(s) | 894 |
| BseBI | CCWGG | 3 cut(s) | 584, 692, 1107 |
| BseCI | ATCGAT | 1 cut(s) | 591 |
| BseDI | CCNNGG | 7 cut(s) | 75, 583, 690, 783, 1105, 1106, 1278 |
| BseGI | GGATG | 2 cut(s) | 895, 1294 |
| BseJI | GATNNNNATC | 1 cut(s) | 894 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1279 |
| BseMI | GCAATG | 2 cut(s) | 166, 846 |
| BseMII | CTCAG | 1 cut(s) | 747 |
| BseNI | ACTGG | 3 cut(s) | 460, 555, 656 |
| BsePI | GCGCGC | 1 cut(s) | 1305 |
| BseSI | GKGCMC | 1 cut(s) | 1461 |
| BseXI | GCAGC | 8 cut(s) | 57, 76, 205, 225, 482, 535, 538, 538 |
| Bsh1236I | CGCG | 1 cut(s) | 1307 |
| BshFI | GGCC | 2 cut(s) | 1092, 1322 |
| BshNI | GGYRCC | 1 cut(s) | 79 |
| BshVI | ATCGAT | 1 cut(s) | 591 |
| BsiSI | CCGG | 2 cut(s) | 610, 937 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1279 |
| BsmAI | GTCTC | 1 cut(s) | 253 |
| BsnI | GGCC | 2 cut(s) | 1092, 1322 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1461 |
| Bsp1407I | TGTACA | 1 cut(s) | 475 |
| Bsp143I | GATC | 6 cut(s) | 330, 768, 791, 859, 895, 1348 |
| Bsp19I | CCATGG | 2 cut(s) | 75, 1278 |
| BspACI | CCGC | 1 cut(s) | 1323 |
| BspANI | GGCC | 2 cut(s) | 1092, 1322 |
| BspCNI | CTCAG | 1 cut(s) | 746 |
| BspDI | ATCGAT | 1 cut(s) | 591 |
| BspFNI | CGCG | 1 cut(s) | 1307 |
| BspLI | GGNNCC | 2 cut(s) | 30, 81 |
| BspPI | GGATC | 2 cut(s) | 338, 854 |
| BspQI | GCTCTTC | 1 cut(s) | 1205 |
| BspT107I | GGYRCC | 1 cut(s) | 79 |
| BsrDI | GCAATG | 2 cut(s) | 166, 846 |
| BsrGI | TGTACA | 1 cut(s) | 475 |
| BsrI | ACTGG | 3 cut(s) | 460, 555, 656 |
| BssECI | CCNNGG | 7 cut(s) | 75, 583, 690, 783, 1105, 1106, 1278 |
| BssHII | GCGCGC | 1 cut(s) | 1305 |
| BssMI | GATC | 6 cut(s) | 330, 768, 791, 859, 895, 1348 |
| BssNAI | GTATAC | 2 cut(s) | 393, 726 |
| BssSI | CACGAG | 1 cut(s) | 1251 |
| BssT1I | CCWWGG | 3 cut(s) | 75, 783, 1278 |
| Bst1107I | GTATAC | 2 cut(s) | 393, 726 |
| Bst2BI | CACGAG | 1 cut(s) | 1251 |
| Bst2UI | CCWGG | 3 cut(s) | 584, 692, 1107 |
| Bst4CI | ACNGT | 7 cut(s) | 28, 40, 397, 1148, 1338, 1394, 1526 |
| Bst6I | CTCTTC | 3 cut(s) | 251, 1205, 1350 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 86, 1031 |
| BstAUI | TGTACA | 1 cut(s) | 475 |
| BstC8I | GCNNGC | 4 cut(s) | 488, 1242, 1307, 1476 |
| BstDEI | CTNAG | 2 cut(s) | 699, 733 |
| BstDSI | CCRYGG | 2 cut(s) | 75, 1278 |
| BstF5I | GGATG | 2 cut(s) | 895, 1294 |
| BstFNI | CGCG | 1 cut(s) | 1307 |
| BstH2I | RGCGCY | 1 cut(s) | 1231 |
| BstHHI | GCGC | 4 cut(s) | 117, 1230, 1307, 1309 |
| BstKTI | GATC | 6 cut(s) | 333, 771, 794, 862, 898, 1351 |
| BstMAI | GTCTC | 1 cut(s) | 253 |
| BstMBI | GATC | 6 cut(s) | 330, 768, 791, 859, 895, 1348 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 86, 487, 557, 1031, 1246 |
| BstNI | CCWGG | 3 cut(s) | 584, 692, 1107 |
| BstNSI | RCATGY | 2 cut(s) | 155, 494 |
| BstSCI | CCNGG | 4 cut(s) | 582, 690, 936, 1105 |
| BstSFI | CTRYAG | 1 cut(s) | 816 |
| BstSLI | GKGCMC | 1 cut(s) | 1461 |
| BstUI | CGCG | 1 cut(s) | 1307 |
| BstV1I | GCAGC | 8 cut(s) | 57, 76, 205, 225, 482, 535, 538, 538 |
| BstX2I | RGATCY | 2 cut(s) | 791, 1348 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1285 |
| BstYI | RGATCY | 2 cut(s) | 791, 1348 |
| BstZ17I | GTATAC | 2 cut(s) | 393, 726 |
| Bsu15I | ATCGAT | 1 cut(s) | 591 |
| BsuI | GTATCC | 1 cut(s) | 1397 |
| BsuRI | GGCC | 2 cut(s) | 1092, 1322 |
| BsuTUI | ATCGAT | 1 cut(s) | 591 |
| BtgI | CCRYGG | 2 cut(s) | 75, 1278 |
| BtsCI | GGATG | 2 cut(s) | 895, 1294 |
| BtsIMutI | CAGTG | 4 cut(s) | 132, 467, 562, 1531 |
| Cac8I | GCNNGC | 4 cut(s) | 488, 1242, 1307, 1476 |
| CfoI | GCGC | 4 cut(s) | 117, 1230, 1307, 1309 |
| Cfr13I | GGNCC | 2 cut(s) | 580, 812 |
| ClaI | ATCGAT | 1 cut(s) | 591 |
| CseI | GACGC | 2 cut(s) | 91, 513 |
| Csp6I | GTAC | 4 cut(s) | 50, 476, 708, 1390 |
| CviQI | GTAC | 4 cut(s) | 50, 476, 708, 1390 |
| DdeI | CTNAG | 2 cut(s) | 699, 733 |
| DpnI | GATC | 6 cut(s) | 332, 770, 793, 861, 897, 1350 |
| DpnII | GATC | 6 cut(s) | 330, 768, 791, 859, 895, 1348 |
| DraI | TTTAAA | 1 cut(s) | 1101 |
| Eam1104I | CTCTTC | 3 cut(s) | 251, 1205, 1350 |
| EarI | CTCTTC | 3 cut(s) | 251, 1205, 1350 |
| Eco130I | CCWWGG | 3 cut(s) | 75, 783, 1278 |
| Eco47I | GGWCC | 2 cut(s) | 580, 812 |
| Eco57I | CTGAAG | 7 cut(s) | 141, 156, 284, 557, 1005, 1253, 1354 |
| EcoRI | GAATTC | 1 cut(s) | 299 |
| EcoRII | CCWGG | 3 cut(s) | 582, 690, 1105 |
| EcoT14I | CCWWGG | 3 cut(s) | 75, 783, 1278 |
| ErhI | CCWWGG | 3 cut(s) | 75, 783, 1278 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 997, 1029 |
| FauNDI | CATATG | 1 cut(s) | 420 |
| FbaI | TGATCA | 1 cut(s) | 895 |
| FblI | GTMKAC | 2 cut(s) | 392, 725 |
| FokI | GGATG | 2 cut(s) | 902, 1301 |
| FspBI | CTAG | 6 cut(s) | 224, 795, 1163, 1181, 1274, 1310 |
| GlaI | GCGC | 4 cut(s) | 116, 1229, 1306, 1308 |
| GsuI | CTGGAG | 2 cut(s) | 542, 639 |
| HaeII | RGCGCY | 1 cut(s) | 1231 |
| HaeIII | GGCC | 2 cut(s) | 1092, 1322 |
| HapII | CCGG | 2 cut(s) | 610, 937 |
| HgaI | GACGC | 2 cut(s) | 91, 513 |
| HhaI | GCGC | 4 cut(s) | 117, 1230, 1307, 1309 |
| Hin6I | GCGC | 4 cut(s) | 115, 1228, 1305, 1307 |
| HinP1I | GCGC | 4 cut(s) | 115, 1228, 1305, 1307 |
| HincII | GTYRAC | 1 cut(s) | 127 |
| HindII | GTYRAC | 1 cut(s) | 127 |
| HindIII | AAGCTT | 2 cut(s) | 913, 1262 |
| HinfI | GANTC | 9 cut(s) | 227, 428, 441, 532, 613, 664, 695, 805, 1360 |
| HpaII | CCGG | 2 cut(s) | 610, 937 |
| Hpy166II | GTNNAC | 4 cut(s) | 24, 127, 393, 726 |
| Hpy188I | TCNGA | 7 cut(s) | 121, 201, 354, 537, 985, 1045, 1417 |
| Hpy188III | TCNNGA | 4 cut(s) | 521, 1190, 1342, 1352 |
| Hpy8I | GTNNAC | 4 cut(s) | 24, 127, 393, 726 |
| HpyAV | CCTTC | 6 cut(s) | 131, 226, 349, 1378, 1394, 1414 |
| HpyCH4III | ACNGT | 7 cut(s) | 28, 40, 397, 1148, 1338, 1394, 1526 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 86, 487, 557, 1031, 1246 |
| HpyF3I | CTNAG | 2 cut(s) | 699, 733 |
| HspAI | GCGC | 4 cut(s) | 115, 1228, 1305, 1307 |
| Ksp22I | TGATCA | 1 cut(s) | 895 |
| Kzo9I | GATC | 6 cut(s) | 330, 768, 791, 859, 895, 1348 |
| LguI | GCTCTTC | 1 cut(s) | 1205 |
| LmnI | GCTCC | 4 cut(s) | 235, 371, 523, 658 |
| Lsp1109I | GCAGC | 8 cut(s) | 57, 76, 205, 225, 482, 535, 538, 538 |
| LweI | GCATC | 5 cut(s) | 880, 1012, 1279, 1433, 1435 |
| MaeI | CTAG | 6 cut(s) | 224, 795, 1163, 1181, 1274, 1310 |
| MaeIII | GTNAC | 2 cut(s) | 154, 835 |
| MalI | GATC | 6 cut(s) | 332, 770, 793, 861, 897, 1350 |
| MboI | GATC | 6 cut(s) | 330, 768, 791, 859, 895, 1348 |
| MboII | GAAGA | 9 cut(s) | 268, 277, 1066, 1222, 1232, 1246, 1367, 1454, 1523 |
| MflI | RGATCY | 2 cut(s) | 791, 1348 |
| MhlI | GDGCHC | 1 cut(s) | 1461 |
| MluCI | AATT | 5 cut(s) | 279, 299, 626, 1197, 1496 |
| MlyI | GAGTC | 4 cut(s) | 437, 450, 622, 673 |
| MseI | TTAA | 8 cut(s) | 213, 339, 366, 918, 990, 1100, 1266, 1499 |
| MslI | CAYNNNNRTG | 3 cut(s) | 423, 833, 1283 |
| MspA1I | CMGCKG | 3 cut(s) | 473, 529, 682 |
| MspI | CCGG | 2 cut(s) | 610, 937 |
| MspR9I | CCNGG | 4 cut(s) | 584, 692, 938, 1107 |
| MvaI | CCWGG | 3 cut(s) | 584, 692, 1107 |
| MvnI | CGCG | 1 cut(s) | 1307 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 86, 487, 557, 1031, 1246 |
| NciI | CCSGG | 1 cut(s) | 938 |
| NcoI | CCATGG | 2 cut(s) | 75, 1278 |
| NdeI | CATATG | 1 cut(s) | 420 |
| NdeII | GATC | 6 cut(s) | 330, 768, 791, 859, 895, 1348 |
| NlaIV | GGNNCC | 2 cut(s) | 30, 81 |
| NmuCI | GTSAC | 2 cut(s) | 154, 835 |
| NspI | RCATGY | 2 cut(s) | 155, 494 |
| OliI | CACNNNNGTG | 1 cut(s) | 833 |
| PasI | CCCWGGG | 1 cut(s) | 1106 |
| PauI | GCGCGC | 1 cut(s) | 1305 |
| PciSI | GCTCTTC | 1 cut(s) | 1205 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 929 |
| PfeI | GAWTC | 5 cut(s) | 227, 532, 695, 805, 1360 |
| PleI | GAGTC | 4 cut(s) | 436, 449, 621, 672 |
| PpsI | GAGTC | 4 cut(s) | 436, 449, 621, 672 |
| Psp6I | CCWGG | 3 cut(s) | 582, 690, 1105 |
| PspGI | CCWGG | 3 cut(s) | 582, 690, 1105 |
| PspN4I | GGNNCC | 2 cut(s) | 30, 81 |
| PspPI | GGNCC | 2 cut(s) | 580, 812 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1322, 1354 |
| PsuI | RGATCY | 2 cut(s) | 791, 1348 |
| PteI | GCGCGC | 1 cut(s) | 1305 |
| PvuII | CAGCTG | 3 cut(s) | 473, 529, 682 |
| RsaI | GTAC | 4 cut(s) | 51, 477, 709, 1391 |
| RsaNI | GTAC | 4 cut(s) | 50, 476, 708, 1390 |
| RseI | CAYNNNNRTG | 3 cut(s) | 423, 833, 1283 |
| SapI | GCTCTTC | 1 cut(s) | 1205 |
| SaqAI | TTAA | 8 cut(s) | 213, 339, 366, 918, 990, 1100, 1266, 1499 |
| Sau3AI | GATC | 6 cut(s) | 330, 768, 791, 859, 895, 1348 |
| Sau96I | GGNCC | 2 cut(s) | 580, 812 |
| ScaI | AGTACT | 1 cut(s) | 709 |
| SchI | GAGTC | 4 cut(s) | 437, 450, 622, 673 |
| ScrFI | CCNGG | 4 cut(s) | 584, 692, 938, 1107 |
| SduI | GDGCHC | 1 cut(s) | 1461 |
| SfaNI | GCATC | 5 cut(s) | 880, 1012, 1279, 1433, 1435 |
| SfcI | CTRYAG | 1 cut(s) | 816 |
| SinI | GGWCC | 2 cut(s) | 580, 812 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 423, 833, 1283 |
| SmlI | CTYRAG | 2 cut(s) | 380, 871 |
| SmoI | CTYRAG | 2 cut(s) | 380, 871 |
| Sse9I | AATT | 5 cut(s) | 279, 299, 626, 1197, 1496 |
| SsiI | CCGC | 1 cut(s) | 1323 |
| SspI | AATATT | 2 cut(s) | 902, 1381 |
| SspMI | CTAG | 6 cut(s) | 224, 795, 1163, 1181, 1274, 1310 |
| StyD4I | CCNGG | 4 cut(s) | 582, 690, 936, 1105 |
| StyI | CCWWGG | 3 cut(s) | 75, 783, 1278 |
| TaaI | ACNGT | 7 cut(s) | 28, 40, 397, 1148, 1338, 1394, 1526 |
| TaqI | TCGA | 2 cut(s) | 230, 591 |
| TasI | AATT | 5 cut(s) | 279, 299, 626, 1197, 1496 |
| TatI | WGTACW | 2 cut(s) | 475, 707 |
| TauI | GCSGC | 1 cut(s) | 1325 |
| TfiI | GAWTC | 5 cut(s) | 227, 532, 695, 805, 1360 |
| Tru1I | TTAA | 8 cut(s) | 213, 339, 366, 918, 990, 1100, 1266, 1499 |
| Tru9I | TTAA | 8 cut(s) | 213, 339, 366, 918, 990, 1100, 1266, 1499 |
| TscAI | CASTG | 4 cut(s) | 139, 467, 562, 1531 |
| TseFI | GTSAC | 2 cut(s) | 154, 835 |
| TseI | GCWGC | 9 cut(s) | 45, 89, 193, 238, 470, 526, 548, 551, 1530 |
| Tsp45I | GTSAC | 2 cut(s) | 154, 835 |
| TspDTI | ATGAA | 7 cut(s) | 281, 292, 969, 1233, 1347, 1413, 1524 |
| TspRI | CASTG | 4 cut(s) | 139, 467, 562, 1531 |
| VpaK11BI | GGWCC | 2 cut(s) | 580, 812 |
| XapI | RAATTY | 2 cut(s) | 299, 626 |
| XceI | RCATGY | 2 cut(s) | 155, 494 |
| XmiI | GTMKAC | 2 cut(s) | 392, 725 |
| XspI | CTAG | 6 cut(s) | 224, 795, 1163, 1181, 1274, 1310 |
| ZrmI | AGTACT | 1 cut(s) | 709 |