RchiOBHm_Chr3g0485681

Acts as an adapter for the XPO1 CRM1-mediated export of the 60S ribosomal subunit

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
32431963 .. 32434600
2638 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1545 bp
ATGGATATAGATACGGGTATGTTTACGGTTCCTCAAACTGTTGGCAGCGTACTATGTTGCAAATGTGGTATTCCCATGGCACCAAATGCTGCCAATATGTGCGTCAAGTGTTTGCGCTCTGAAGTTGACATCACTGAAGGTTTGCAGAAGCATGTGACTATTGTGCATTGCCCCGAATGTGATACCTACTTGCAGCCTCCGAGAACTTGGATTAAAGCCCAACTAGAATCGAAGGAGCTGCTAACTTTCTGTGTGAAGAGACTGAAGAACTTGAATAAAATTAGGTTGGTTCATGCCGAATTCATTTGGACTGAACCTCACTCCAAGAGGATCAAGGTTAAGTTGGTAGTTCAGAAGGAAGTTCTTAATGGAGCAATACTTGAGCAATCGTATACTGTTGAGTATGTTCAGCAAGAACATATGTGTGAGTCTTGTGCAAGAGTCCAAGCCAACCCTGACCAGTGGGTTGCAGCTGTACAGCTTCGCCAGCATGTTTCTCACAGACGCACTTTTTTCTATCTGGAGCAGCTGATTCTGAAGCATGGTGCTGCTGCCAGTGCCATAAAGATTACGCAGATGGACCAGGGTATCGATTTCTTTTTCTCAAACCGGAGTCATGGTGTGAAATTTGTGGAGTTTGTGGGTAAAGTTGCTCCAGTAAGGAGTCGTAATGACAAACAGCTGGTTTCCCAGGATTCTAAGAGTAGTACTTATCATTACAAGTATACATTCTCAGTTGAAATCTCCCCCATTTGCCGTGAGGATTTGATCTGTCTGCCTCCCAAGGTTAGATCTAGTTTTGGGAATCTTGGTCCTGTAGTGATTTGCACTAAAGTGACTAACAGCATTGCTTTGCTTGATCCTTTGACCTTGAGGCATTGTTTCTTGGATGCTGATCAATATTGGAGGTCAAGCTTTAAGTCGCTACAAACGAGCCGGGAGTTAGTGGAGTATATAGTGCTTGATGTAGAGATGGTTTCATCTGAAGTTAATGTTGGTGGCACAAGGTATGCTTTAGCTGATGCACAAGTTGCCCGTGTGTCTGATTTTGGGAAGAATGACACTATTTTCAACATAAAAACACATATAGGCCATCTTTTAAACCCTGGGGATTATGCTCTTGGTTATGACTTATATGGGGCAAACAGTAATGACGAGGAACTAGACAAGTATAAGGGTCTAGTCATTCCAGATGTAATTTTGATAAAGAAGAGCTATGAAGAAAAGCGCCTGAAGAAGCGTGCAAAGCCTCGTGCATGGAAGCTTAAATCCCTAGCCATGGAAGTGGATGCTAAAGGTAGAGGCGCGCTAGAAAAGGAGGCCGCAGAGTATGAACAGTTCTTGAAAGATCTGGAAGAGAATCCTGCCTTCAGGTTCAATATTGATTTGTACCGTGATGAAGGATACCAGCCATCAGAGAAGGCATCTGTGGTTGATGGGGAAGATGCACCTTTTGTGCCCTTTGATGAGTTGCTTGCTGACATGGATAACCTCCAATTAAGAGAGTATGAAGATGATGAGGACAGTGGCAGCATGAGGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

514

Amino Acids

58.47

Weight (kDa)

5.98

Isoelectric Point (pI)

40.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NMD3 PF04981 19 - 248 5.5e-76 NMD3 family
NMD_SH3 PF21193 251 - 295 5.1e-17 NMD3 SH3 domain
OB_NMD3 PF21192 315 - 404 4.4e-31 NMD3 OB-fold domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 79
AccI GTMKAC 2 cut(s) 392, 725
AccII CGCG 1 cut(s) 1307
AciI CCGC 1 cut(s) 1323
AclWI GGATC 2 cut(s) 338, 854
AcsI RAATTY 2 cut(s) 299, 626
AcuI CTGAAG 7 cut(s) 141, 156, 284, 557, 1005, 1253, 1354
AfaI GTAC 4 cut(s) 51, 477, 709, 1391
AfiI CCNNNNNNNGG 1 cut(s) 1279
AgsI TTSAA 5 cut(s) 274, 740, 1072, 1345, 1378
AjnI CCWGG 3 cut(s) 582, 690, 1105
AjuI GAANNNNNNNTTGG 2 cut(s) 978, 1010
AleI CACNNNNGTG 1 cut(s) 833
AluBI AGCT 9 cut(s) 238, 473, 481, 529, 682, 915, 1019, 1215, 1264
AluI AGCT 9 cut(s) 238, 473, 481, 529, 682, 915, 1019, 1215, 1264
Alw26I GTCTC 1 cut(s) 253
AlwI GGATC 2 cut(s) 338, 854
AoxI GGCC 2 cut(s) 1090, 1320
ApeKI GCWGC 9 cut(s) 45, 89, 193, 238, 470, 526, 548, 551, 1530
ApoI RAATTY 2 cut(s) 299, 626
AspLEI GCGC 4 cut(s) 117, 1230, 1307, 1309
AspS9I GGNCC 2 cut(s) 580, 812
AsuC2I CCSGG 1 cut(s) 938
AvaII GGWCC 2 cut(s) 580, 812
BaeGI GKGCMC 1 cut(s) 1461
BaeI ACNNNNGTAYC 2 cut(s) 571, 604
BanI GGYRCC 1 cut(s) 79
BauI CACGAG 1 cut(s) 1251
BbvI GCAGC 8 cut(s) 57, 76, 205, 225, 482, 535, 538, 538
BccI CCATC 5 cut(s) 571, 967, 1101, 1420, 1430
BceAI ACGGC 1 cut(s) 741
BcgI CGANNNNNNTGC 2 cut(s) 220, 254
BciT130I CCWGG 3 cut(s) 584, 692, 1107
BciVI GTATCC 1 cut(s) 1397
BclI TGATCA 1 cut(s) 895
BcnI CCSGG 1 cut(s) 938
BcoDI GTCTC 1 cut(s) 253
BfaI CTAG 6 cut(s) 224, 795, 1163, 1181, 1274, 1310
BfmI CTRYAG 1 cut(s) 816
BfoI RGCGCY 1 cut(s) 1231
BfuI GTATCC 1 cut(s) 1397
BglII AGATCT 2 cut(s) 791, 1348
BmcAI AGTACT 1 cut(s) 709
Bme1390I CCNGG 4 cut(s) 584, 692, 938, 1107
Bme18I GGWCC 2 cut(s) 580, 812
BmgT120I GGNCC 2 cut(s) 580, 812
BmiI GGNNCC 2 cut(s) 30, 81
BmrFI CCNGG 4 cut(s) 584, 692, 938, 1107
BmsI GCATC 5 cut(s) 880, 1012, 1279, 1433, 1435
BpmI CTGGAG 2 cut(s) 542, 639
BpuEI CTTGAG 2 cut(s) 401, 892
BpuMI CCSGG 1 cut(s) 938
Bsa29I ATCGAT 1 cut(s) 591
BsaBI GATNNNNATC 1 cut(s) 894
BsaJI CCNNGG 7 cut(s) 75, 583, 690, 783, 1105, 1106, 1278
BsaWI WCCGGW 1 cut(s) 609
BsaXI ACNNNNNCTCC 2 cut(s) 604, 634
Bsc4I CCNNNNNNNGG 1 cut(s) 1279
Bse1I ACTGG 3 cut(s) 460, 555, 656
Bse3DI GCAATG 2 cut(s) 166, 846
Bse8I GATNNNNATC 1 cut(s) 894
BseBI CCWGG 3 cut(s) 584, 692, 1107
BseCI ATCGAT 1 cut(s) 591
BseDI CCNNGG 7 cut(s) 75, 583, 690, 783, 1105, 1106, 1278
BseGI GGATG 2 cut(s) 895, 1294
BseJI GATNNNNATC 1 cut(s) 894
BseLI CCNNNNNNNGG 1 cut(s) 1279
BseMI GCAATG 2 cut(s) 166, 846
BseMII CTCAG 1 cut(s) 747
BseNI ACTGG 3 cut(s) 460, 555, 656
BsePI GCGCGC 1 cut(s) 1305
BseSI GKGCMC 1 cut(s) 1461
BseXI GCAGC 8 cut(s) 57, 76, 205, 225, 482, 535, 538, 538
Bsh1236I CGCG 1 cut(s) 1307
BshFI GGCC 2 cut(s) 1092, 1322
BshNI GGYRCC 1 cut(s) 79
BshVI ATCGAT 1 cut(s) 591
BsiSI CCGG 2 cut(s) 610, 937
BslI CCNNNNNNNGG 1 cut(s) 1279
BsmAI GTCTC 1 cut(s) 253
BsnI GGCC 2 cut(s) 1092, 1322
Bsp1286I GDGCHC 1 cut(s) 1461
Bsp1407I TGTACA 1 cut(s) 475
Bsp143I GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
Bsp19I CCATGG 2 cut(s) 75, 1278
BspACI CCGC 1 cut(s) 1323
BspANI GGCC 2 cut(s) 1092, 1322
BspCNI CTCAG 1 cut(s) 746
BspDI ATCGAT 1 cut(s) 591
BspFNI CGCG 1 cut(s) 1307
BspLI GGNNCC 2 cut(s) 30, 81
BspPI GGATC 2 cut(s) 338, 854
BspQI GCTCTTC 1 cut(s) 1205
BspT107I GGYRCC 1 cut(s) 79
BsrDI GCAATG 2 cut(s) 166, 846
BsrGI TGTACA 1 cut(s) 475
BsrI ACTGG 3 cut(s) 460, 555, 656
BssECI CCNNGG 7 cut(s) 75, 583, 690, 783, 1105, 1106, 1278
BssHII GCGCGC 1 cut(s) 1305
BssMI GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
BssNAI GTATAC 2 cut(s) 393, 726
BssSI CACGAG 1 cut(s) 1251
BssT1I CCWWGG 3 cut(s) 75, 783, 1278
Bst1107I GTATAC 2 cut(s) 393, 726
Bst2BI CACGAG 1 cut(s) 1251
Bst2UI CCWGG 3 cut(s) 584, 692, 1107
Bst4CI ACNGT 7 cut(s) 28, 40, 397, 1148, 1338, 1394, 1526
Bst6I CTCTTC 3 cut(s) 251, 1205, 1350
BstAPI GCANNNNNTGC 2 cut(s) 86, 1031
BstAUI TGTACA 1 cut(s) 475
BstC8I GCNNGC 4 cut(s) 488, 1242, 1307, 1476
BstDEI CTNAG 2 cut(s) 699, 733
BstDSI CCRYGG 2 cut(s) 75, 1278
BstF5I GGATG 2 cut(s) 895, 1294
BstFNI CGCG 1 cut(s) 1307
BstH2I RGCGCY 1 cut(s) 1231
BstHHI GCGC 4 cut(s) 117, 1230, 1307, 1309
BstKTI GATC 6 cut(s) 333, 771, 794, 862, 898, 1351
BstMAI GTCTC 1 cut(s) 253
BstMBI GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
BstMWI GCNNNNNNNGC 5 cut(s) 86, 487, 557, 1031, 1246
BstNI CCWGG 3 cut(s) 584, 692, 1107
BstNSI RCATGY 2 cut(s) 155, 494
BstSCI CCNGG 4 cut(s) 582, 690, 936, 1105
BstSFI CTRYAG 1 cut(s) 816
BstSLI GKGCMC 1 cut(s) 1461
BstUI CGCG 1 cut(s) 1307
BstV1I GCAGC 8 cut(s) 57, 76, 205, 225, 482, 535, 538, 538
BstX2I RGATCY 2 cut(s) 791, 1348
BstXI CCANNNNNNTGG 1 cut(s) 1285
BstYI RGATCY 2 cut(s) 791, 1348
BstZ17I GTATAC 2 cut(s) 393, 726
Bsu15I ATCGAT 1 cut(s) 591
BsuI GTATCC 1 cut(s) 1397
BsuRI GGCC 2 cut(s) 1092, 1322
BsuTUI ATCGAT 1 cut(s) 591
BtgI CCRYGG 2 cut(s) 75, 1278
BtsCI GGATG 2 cut(s) 895, 1294
BtsIMutI CAGTG 4 cut(s) 132, 467, 562, 1531
Cac8I GCNNGC 4 cut(s) 488, 1242, 1307, 1476
CfoI GCGC 4 cut(s) 117, 1230, 1307, 1309
Cfr13I GGNCC 2 cut(s) 580, 812
ClaI ATCGAT 1 cut(s) 591
CseI GACGC 2 cut(s) 91, 513
Csp6I GTAC 4 cut(s) 50, 476, 708, 1390
CviQI GTAC 4 cut(s) 50, 476, 708, 1390
DdeI CTNAG 2 cut(s) 699, 733
DpnI GATC 6 cut(s) 332, 770, 793, 861, 897, 1350
DpnII GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
DraI TTTAAA 1 cut(s) 1101
Eam1104I CTCTTC 3 cut(s) 251, 1205, 1350
EarI CTCTTC 3 cut(s) 251, 1205, 1350
Eco130I CCWWGG 3 cut(s) 75, 783, 1278
Eco47I GGWCC 2 cut(s) 580, 812
Eco57I CTGAAG 7 cut(s) 141, 156, 284, 557, 1005, 1253, 1354
EcoRI GAATTC 1 cut(s) 299
EcoRII CCWGG 3 cut(s) 582, 690, 1105
EcoT14I CCWWGG 3 cut(s) 75, 783, 1278
ErhI CCWWGG 3 cut(s) 75, 783, 1278
FalI AAGNNNNNCTT 2 cut(s) 997, 1029
FauNDI CATATG 1 cut(s) 420
FbaI TGATCA 1 cut(s) 895
FblI GTMKAC 2 cut(s) 392, 725
FokI GGATG 2 cut(s) 902, 1301
FspBI CTAG 6 cut(s) 224, 795, 1163, 1181, 1274, 1310
GlaI GCGC 4 cut(s) 116, 1229, 1306, 1308
GsuI CTGGAG 2 cut(s) 542, 639
HaeII RGCGCY 1 cut(s) 1231
HaeIII GGCC 2 cut(s) 1092, 1322
HapII CCGG 2 cut(s) 610, 937
HgaI GACGC 2 cut(s) 91, 513
HhaI GCGC 4 cut(s) 117, 1230, 1307, 1309
Hin6I GCGC 4 cut(s) 115, 1228, 1305, 1307
HinP1I GCGC 4 cut(s) 115, 1228, 1305, 1307
HincII GTYRAC 1 cut(s) 127
HindII GTYRAC 1 cut(s) 127
HindIII AAGCTT 2 cut(s) 913, 1262
HinfI GANTC 9 cut(s) 227, 428, 441, 532, 613, 664, 695, 805, 1360
HpaII CCGG 2 cut(s) 610, 937
Hpy166II GTNNAC 4 cut(s) 24, 127, 393, 726
Hpy188I TCNGA 7 cut(s) 121, 201, 354, 537, 985, 1045, 1417
Hpy188III TCNNGA 4 cut(s) 521, 1190, 1342, 1352
Hpy8I GTNNAC 4 cut(s) 24, 127, 393, 726
HpyAV CCTTC 6 cut(s) 131, 226, 349, 1378, 1394, 1414
HpyCH4III ACNGT 7 cut(s) 28, 40, 397, 1148, 1338, 1394, 1526
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 487, 557, 1031, 1246
HpyF3I CTNAG 2 cut(s) 699, 733
HspAI GCGC 4 cut(s) 115, 1228, 1305, 1307
Ksp22I TGATCA 1 cut(s) 895
Kzo9I GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
LguI GCTCTTC 1 cut(s) 1205
LmnI GCTCC 4 cut(s) 235, 371, 523, 658
Lsp1109I GCAGC 8 cut(s) 57, 76, 205, 225, 482, 535, 538, 538
LweI GCATC 5 cut(s) 880, 1012, 1279, 1433, 1435
MaeI CTAG 6 cut(s) 224, 795, 1163, 1181, 1274, 1310
MaeIII GTNAC 2 cut(s) 154, 835
MalI GATC 6 cut(s) 332, 770, 793, 861, 897, 1350
MboI GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
MboII GAAGA 9 cut(s) 268, 277, 1066, 1222, 1232, 1246, 1367, 1454, 1523
MflI RGATCY 2 cut(s) 791, 1348
MhlI GDGCHC 1 cut(s) 1461
MluCI AATT 5 cut(s) 279, 299, 626, 1197, 1496
MlyI GAGTC 4 cut(s) 437, 450, 622, 673
MseI TTAA 8 cut(s) 213, 339, 366, 918, 990, 1100, 1266, 1499
MslI CAYNNNNRTG 3 cut(s) 423, 833, 1283
MspA1I CMGCKG 3 cut(s) 473, 529, 682
MspI CCGG 2 cut(s) 610, 937
MspR9I CCNGG 4 cut(s) 584, 692, 938, 1107
MvaI CCWGG 3 cut(s) 584, 692, 1107
MvnI CGCG 1 cut(s) 1307
MwoI GCNNNNNNNGC 5 cut(s) 86, 487, 557, 1031, 1246
NciI CCSGG 1 cut(s) 938
NcoI CCATGG 2 cut(s) 75, 1278
NdeI CATATG 1 cut(s) 420
NdeII GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
NlaIV GGNNCC 2 cut(s) 30, 81
NmuCI GTSAC 2 cut(s) 154, 835
NspI RCATGY 2 cut(s) 155, 494
OliI CACNNNNGTG 1 cut(s) 833
PasI CCCWGGG 1 cut(s) 1106
PauI GCGCGC 1 cut(s) 1305
PciSI GCTCTTC 1 cut(s) 1205
PcsI WCGNNNNNNNCGW 1 cut(s) 929
PfeI GAWTC 5 cut(s) 227, 532, 695, 805, 1360
PleI GAGTC 4 cut(s) 436, 449, 621, 672
PpsI GAGTC 4 cut(s) 436, 449, 621, 672
Psp6I CCWGG 3 cut(s) 582, 690, 1105
PspGI CCWGG 3 cut(s) 582, 690, 1105
PspN4I GGNNCC 2 cut(s) 30, 81
PspPI GGNCC 2 cut(s) 580, 812
PsrI GAACNNNNNNTAC 2 cut(s) 1322, 1354
PsuI RGATCY 2 cut(s) 791, 1348
PteI GCGCGC 1 cut(s) 1305
PvuII CAGCTG 3 cut(s) 473, 529, 682
RsaI GTAC 4 cut(s) 51, 477, 709, 1391
RsaNI GTAC 4 cut(s) 50, 476, 708, 1390
RseI CAYNNNNRTG 3 cut(s) 423, 833, 1283
SapI GCTCTTC 1 cut(s) 1205
SaqAI TTAA 8 cut(s) 213, 339, 366, 918, 990, 1100, 1266, 1499
Sau3AI GATC 6 cut(s) 330, 768, 791, 859, 895, 1348
Sau96I GGNCC 2 cut(s) 580, 812
ScaI AGTACT 1 cut(s) 709
SchI GAGTC 4 cut(s) 437, 450, 622, 673
ScrFI CCNGG 4 cut(s) 584, 692, 938, 1107
SduI GDGCHC 1 cut(s) 1461
SfaNI GCATC 5 cut(s) 880, 1012, 1279, 1433, 1435
SfcI CTRYAG 1 cut(s) 816
SinI GGWCC 2 cut(s) 580, 812
SmiMI CAYNNNNRTG 3 cut(s) 423, 833, 1283
SmlI CTYRAG 2 cut(s) 380, 871
SmoI CTYRAG 2 cut(s) 380, 871
Sse9I AATT 5 cut(s) 279, 299, 626, 1197, 1496
SsiI CCGC 1 cut(s) 1323
SspI AATATT 2 cut(s) 902, 1381
SspMI CTAG 6 cut(s) 224, 795, 1163, 1181, 1274, 1310
StyD4I CCNGG 4 cut(s) 582, 690, 936, 1105
StyI CCWWGG 3 cut(s) 75, 783, 1278
TaaI ACNGT 7 cut(s) 28, 40, 397, 1148, 1338, 1394, 1526
TaqI TCGA 2 cut(s) 230, 591
TasI AATT 5 cut(s) 279, 299, 626, 1197, 1496
TatI WGTACW 2 cut(s) 475, 707
TauI GCSGC 1 cut(s) 1325
TfiI GAWTC 5 cut(s) 227, 532, 695, 805, 1360
Tru1I TTAA 8 cut(s) 213, 339, 366, 918, 990, 1100, 1266, 1499
Tru9I TTAA 8 cut(s) 213, 339, 366, 918, 990, 1100, 1266, 1499
TscAI CASTG 4 cut(s) 139, 467, 562, 1531
TseFI GTSAC 2 cut(s) 154, 835
TseI GCWGC 9 cut(s) 45, 89, 193, 238, 470, 526, 548, 551, 1530
Tsp45I GTSAC 2 cut(s) 154, 835
TspDTI ATGAA 7 cut(s) 281, 292, 969, 1233, 1347, 1413, 1524
TspRI CASTG 4 cut(s) 139, 467, 562, 1531
VpaK11BI GGWCC 2 cut(s) 580, 812
XapI RAATTY 2 cut(s) 299, 626
XceI RCATGY 2 cut(s) 155, 494
XmiI GTMKAC 2 cut(s) 392, 725
XspI CTAG 6 cut(s) 224, 795, 1163, 1181, 1274, 1310
ZrmI AGTACT 1 cut(s) 709
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.