RchiOBHm_Chr3g0487191

Flowering time control protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0016173
Physical Location & Seq
Forward (+)
34375141 .. 34380961
5821 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1449 bp
ATGGGACTTGCTCTTCCTCTTCTGCTTGGCCACCCCTCGATCCCCACCACAACCCTCATAACATTCCCCACCATCCTATTCCTCCTCACCAGCTCGACTACCATCCCCACCACCACGATCCCAACCACGCCACTGGCTTCGCCAATCCGGTGCCGTTTTCTGTACGCAAAAGGGCTTGGCAACACTCTAATCAAGGACTTCCTAGAGGTCTTTGAAAACCCCAATCATGCTAAGCTTTATGTTGCACAAATTTCAAGAACAGCCACGGAGGACGTTATTCGCTCCTTGTTTGGACAATTTGGGGACATAGTCGAGGTTGTAATGTTGAAGGATAAGCGGACTGGCTTCCAACAAGGAAATTGTTTCGTGAAGTATTCAACATTAGATGCAGCAGAGAGGGCTATCAGAGCTTTAAATAGTCAGCATTATTTTCCTGGGGAGGCAAACCCTATCATAGTCAAATTTGCTGACGGGGAAAGGGAACGCCTTGGGGTACAAGACAGATTGTATGTTTGTGGCATTAACCTGGAAGCTTCAAATAAAGACATTGAGGAAATATTTTCACCTTATGGTCTTGTTGAAGATATCTACATTTTGAAGCACAATCGTGGATGCGGGTTTGTTAAATTTTCCAGTGGAGATATGGCTGTGCAAGCAATCAAAGCTTTAAATGGAACCTTTATTATGAGAGGTTGTGCTCAGCCATTGATTGTTCGTTTTGCGGATCCTAAGAAACCAAGGGAAATAGATCGAAGGGGTAATTATGTATTTAGCAGTGCACCTGGTGGTCCGTACTCTCACGAACCAGTTAGGGTAGTATCTGATCATAGTGATTCCATTGGAGGACAAAATTTTCTAAATGCATCTTATCCTGTCCAACAAATTTCACAACCCCCTATTCCCTATTTGGCAAACCAGGAACCACAGGCTTCTACAGTGATGCAACCAACGTTTCCTCCATTAAGACCACCTTTACAGTTGTGCAGGATGCCTATACAACAAACACAGAATACACAAAGAAGTTCTCAGTCTTCTCAAGTAGCAGTCACGGAGATGCAGAAACAGCATCTGACACAATCATCTGGGCAAATTCTGGGGCAGCAACAGAGTTCTCAGACATTTTCTAGCAATTCTACTTCAGCTGCGCTGCCTTCAAGTCATGAGATAACTGCTCCTCTAGAGTGTGACTGGAGTGAACATACCTGCCCTGATGGATACAAGTATTATTATAATTGTGAAACTTGTGAGAGCAGATGGGACAAACCTGAGGAGTTTGCTTCATTTGAGCAACAATTGCAGATGCAAACACAGCCGAATAATCCTTCTCATCATCTTCAATCCGTGTCATTGGTTCCTTCTACGCAAATAGTTTGTCAAAATCAGCAGGAACTGAATCAAGTACAATTGCAGTCTGAAACAAGTCCTGTTGTTGGCCCAACATGTGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1 WW

Protein Analysis

482

Amino Acids

53.52

Weight (kDa)

6.02

Isoelectric Point (pI)

51.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 79 - 143 1.6e-14 RNA recognition motif
RRM_1 PF00076 169 - 229 1.1e-12 RNA recognition motif
WW PF00397 393 - 422 1.1e-09 WW domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016173)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G47310
fragaria_vesca FvH4_1g26970
malus_domestica MD09G1285500.v1.1
prunus_persica Prupe.3G008500_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0487191
rosa_multiflora Rmu_sc0012751.1_g000001 Rmu_ssc0000366.1_g000028
rosa_roxburghii Rroxscaffold_6G00395040
rosa_rugosa Rorug03G0232100 Rorug03G0232200
rosa_samantha Rh3AG280100 Rh3BG316100 Rh3CG314200 Rh3DG311500
rosa_wichuraiana Rw3G024810

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1230
Acc36I ACCTGC 1 cut(s) 1211
AccB1I GGYRCC 1 cut(s) 150
AciI CCGC 3 cut(s) 337, 615, 722
AclI AACGTT 1 cut(s) 950
AclWI GGATC 4 cut(s) 34, 112, 719, 732
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 6 cut(s) 249, 461, 626, 850, 882, 1089
AcuI CTGAAG 1 cut(s) 1122
AdeI CACNNNGTG 1 cut(s) 785
AfaI GTAC 4 cut(s) 164, 495, 794, 1401
AfiI CCNNNNNNNGG 1 cut(s) 1430
AflIII ACRYGT 1 cut(s) 1439
AgsI TTSAA 9 cut(s) 215, 255, 328, 378, 537, 581, 598, 1155, 1337
AjnI CCWGG 4 cut(s) 433, 525, 781, 915
AleI CACNNNNGTG 1 cut(s) 606
AluBI AGCT 6 cut(s) 93, 235, 410, 533, 665, 1142
AluI AGCT 6 cut(s) 93, 235, 410, 533, 665, 1142
Alw21I GWGCWC 2 cut(s) 700, 781
Alw44I GTGCAC 1 cut(s) 777
AlwI GGATC 4 cut(s) 34, 112, 719, 732
AlwNI CAGNNNCTG 2 cut(s) 1069, 1390
AoxI GGCC 2 cut(s) 28, 1432
ApaLI GTGCAC 1 cut(s) 777
ApeKI GCWGC 4 cut(s) 389, 1099, 1142, 1147
ApoI RAATTY 6 cut(s) 249, 461, 626, 850, 882, 1089
ArsI GACNNNNNNTTYG 2 cut(s) 1357, 1389
AspLEI GCGC 1 cut(s) 1147
AspS9I GGNCC 2 cut(s) 788, 1433
AsuHPI GGTGA 2 cut(s) 79, 555
AvaII GGWCC 1 cut(s) 788
AxyI CCTNAGG 1 cut(s) 1266
BaeGI GKGCMC 1 cut(s) 781
BalI TGGCCA 1 cut(s) 30
BamHI GGATCC 1 cut(s) 724
BanI GGYRCC 1 cut(s) 150
BbsI GAAGAC 1 cut(s) 1023
Bbv12I GWGCWC 2 cut(s) 700, 781
BbvI GCAGC 4 cut(s) 401, 1111, 1129, 1134
BccI CCATC 4 cut(s) 80, 110, 1205, 1248
BceAI ACGGC 1 cut(s) 138
BciT130I CCWGG 4 cut(s) 435, 527, 783, 917
BciVI GTATCC 1 cut(s) 1208
BclI TGATCA 1 cut(s) 823
BfaI CTAG 3 cut(s) 203, 1125, 1178
BfmI CTRYAG 1 cut(s) 933
BfuAI ACCTGC 1 cut(s) 1211
BfuI GTATCC 1 cut(s) 1208
BisI GCNGC 4 cut(s) 390, 1100, 1143, 1148
BlpI GCTNAGC 2 cut(s) 231, 699
BlsI GCNGC 4 cut(s) 391, 1101, 1144, 1149
Bme1390I CCNGG 4 cut(s) 435, 527, 783, 917
Bme18I GGWCC 1 cut(s) 788
BmgT120I GGNCC 2 cut(s) 788, 1433
BmiI GGNNCC 5 cut(s) 152, 676, 726, 921, 1353
BmrFI CCNGG 4 cut(s) 435, 527, 783, 917
BmsI GCATC 8 cut(s) 376, 602, 872, 930, 978, 1044, 1075, 1290
BpiI GAAGAC 1 cut(s) 1023
BpmI CTGGAG 1 cut(s) 1210
Bpu1102I GCTNAGC 2 cut(s) 231, 699
BpuEI CTTGAG 1 cut(s) 1020
BsaJI CCNNGG 4 cut(s) 264, 434, 487, 737
BsaWI WCCGGW 1 cut(s) 147
BsaXI ACNNNNNCTCC 2 cut(s) 940, 970
Bsc4I CCNNNNNNNGG 1 cut(s) 1430
Bse1I ACTGG 5 cut(s) 138, 346, 633, 806, 1193
Bse21I CCTNAGG 1 cut(s) 1266
BseBI CCWGG 4 cut(s) 435, 527, 783, 917
BseDI CCNNGG 4 cut(s) 264, 434, 487, 737
BseGI GGATG 4 cut(s) 72, 102, 617, 993
BseLI CCNNNNNNNGG 1 cut(s) 1430
BseMII CTCAG 4 cut(s) 713, 1040, 1127, 1257
BseNI ACTGG 5 cut(s) 138, 346, 633, 806, 1193
BseRI GAGGAG 3 cut(s) 74, 1164, 1283
BseSI GKGCMC 1 cut(s) 781
BseXI GCAGC 4 cut(s) 401, 1111, 1129, 1134
BsgI GTGCAG 1 cut(s) 1003
BshFI GGCC 2 cut(s) 30, 1434
BshNI GGYRCC 1 cut(s) 150
BsiHKAI GWGCWC 2 cut(s) 700, 781
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 3 cut(s) 18, 317, 1271
BslI CCNNNNNNNGG 1 cut(s) 1430
BsmFI GGGAC 3 cut(s) 18, 317, 1271
BsnI GGCC 2 cut(s) 30, 1434
Bsp1286I GDGCHC 2 cut(s) 700, 781
Bsp143I GATC 5 cut(s) 39, 117, 724, 748, 823
Bsp1720I GCTNAGC 2 cut(s) 231, 699
BspACI CCGC 3 cut(s) 337, 615, 722
BspANI GGCC 2 cut(s) 30, 1434
BspCNI CTCAG 4 cut(s) 712, 1039, 1126, 1258
BspHI TCATGA 1 cut(s) 1159
BspLI GGNNCC 5 cut(s) 152, 676, 726, 921, 1353
BspMI ACCTGC 1 cut(s) 1211
BspPI GGATC 4 cut(s) 34, 112, 719, 732
BspQI GCTCTTC 1 cut(s) 18
BspT107I GGYRCC 1 cut(s) 150
BsrI ACTGG 5 cut(s) 138, 346, 633, 806, 1193
BssECI CCNNGG 4 cut(s) 264, 434, 487, 737
BssMI GATC 5 cut(s) 39, 117, 724, 748, 823
BssT1I CCWWGG 2 cut(s) 487, 737
Bst2UI CCWGG 4 cut(s) 435, 527, 783, 917
Bst4CI ACNGT 2 cut(s) 937, 978
Bst6I CTCTTC 2 cut(s) 18, 24
BstAPI GCANNNNNTGC 1 cut(s) 1294
BstC8I GCNNGC 1 cut(s) 654
BstDEI CTNAG 6 cut(s) 231, 699, 729, 1026, 1113, 1266
BstDSI CCRYGG 1 cut(s) 264
BstF5I GGATG 4 cut(s) 72, 102, 617, 993
BstHHI GCGC 1 cut(s) 1147
BstKTI GATC 5 cut(s) 42, 120, 727, 751, 826
BstMBI GATC 5 cut(s) 39, 117, 724, 748, 823
BstMWI GCNNNNNNNGC 7 cut(s) 398, 407, 653, 662, 1063, 1294, 1309
BstNI CCWGG 4 cut(s) 435, 527, 783, 917
BstNSI RCATGY 1 cut(s) 1443
BstSCI CCNGG 4 cut(s) 433, 525, 781, 915
BstSFI CTRYAG 1 cut(s) 933
BstSLI GKGCMC 1 cut(s) 781
BstV1I GCAGC 4 cut(s) 401, 1111, 1129, 1134
BstV2I GAAGAC 1 cut(s) 1023
BstX2I RGATCY 1 cut(s) 724
BstXI CCANNNNNNTGG 1 cut(s) 133
BstYI RGATCY 1 cut(s) 724
Bsu36I CCTNAGG 1 cut(s) 1266
BsuI GTATCC 1 cut(s) 1208
BsuRI GGCC 2 cut(s) 30, 1434
BtgI CCRYGG 1 cut(s) 264
BtsCI GGATG 4 cut(s) 72, 102, 617, 993
BtsI GCAGTG 1 cut(s) 781
BtsIMutI CAGTG 4 cut(s) 131, 640, 781, 942
BveI ACCTGC 1 cut(s) 1211
Cac8I GCNNGC 1 cut(s) 654
CaiI CAGNNNCTG 2 cut(s) 1069, 1390
CciI TCATGA 1 cut(s) 1159
CfoI GCGC 1 cut(s) 1147
Cfr13I GGNCC 2 cut(s) 788, 1433
CsiI ACCWGGT 1 cut(s) 781
Csp6I GTAC 4 cut(s) 163, 494, 793, 1400
CviAII CATG 3 cut(s) 227, 1160, 1440
CviQI GTAC 4 cut(s) 163, 494, 793, 1400
DdeI CTNAG 6 cut(s) 231, 699, 729, 1026, 1113, 1266
DpnI GATC 5 cut(s) 41, 119, 726, 750, 825
DpnII GATC 5 cut(s) 39, 117, 724, 748, 823
DraI TTTAAA 2 cut(s) 414, 669
DraIII CACNNNGTG 1 cut(s) 785
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 2 cut(s) 18, 24
EarI CTCTTC 2 cut(s) 18, 24
Eco130I CCWWGG 2 cut(s) 487, 737
Eco32I GATATC 1 cut(s) 586
Eco47I GGWCC 1 cut(s) 788
Eco57I CTGAAG 1 cut(s) 1122
Eco81I CCTNAGG 1 cut(s) 1266
EcoRII CCWGG 4 cut(s) 433, 525, 781, 915
EcoRV GATATC 1 cut(s) 586
EcoT14I CCWWGG 2 cut(s) 487, 737
EcoT22I ATGCAT 1 cut(s) 865
ErhI CCWWGG 2 cut(s) 487, 737
FaeI CATG 3 cut(s) 230, 1163, 1443
FalI AAGNNNNNCTT 2 cut(s) 955, 987
FaqI GGGAC 3 cut(s) 18, 317, 1271
FatI CATG 3 cut(s) 226, 1159, 1439
FauI CCCGC 1 cut(s) 608
FbaI TGATCA 1 cut(s) 823
Fnu4HI GCNGC 4 cut(s) 390, 1100, 1143, 1148
FokI GGATG 4 cut(s) 59, 89, 624, 1000
Fsp4HI GCNGC 4 cut(s) 390, 1100, 1143, 1148
FspBI CTAG 3 cut(s) 203, 1125, 1178
GlaI GCGC 1 cut(s) 1146
GluI GCNGC 4 cut(s) 390, 1100, 1143, 1148
GsuI CTGGAG 1 cut(s) 1210
HaeIII GGCC 2 cut(s) 30, 1434
HapII CCGG 1 cut(s) 148
HhaI GCGC 1 cut(s) 1147
Hin1II CATG 3 cut(s) 230, 1163, 1443
Hin6I GCGC 1 cut(s) 1145
HinP1I GCGC 1 cut(s) 1145
HindIII AAGCTT 3 cut(s) 233, 531, 663
HinfI GANTC 2 cut(s) 833, 1393
HpaII CCGG 1 cut(s) 148
HphI GGTGA 2 cut(s) 79, 555
Hpy166II GTNNAC 2 cut(s) 779, 1196
Hpy188I TCNGA 5 cut(s) 407, 823, 1071, 1116, 1414
Hpy188III TCNNGA 5 cut(s) 255, 367, 800, 1160, 1178
Hpy8I GTNNAC 2 cut(s) 779, 1196
HpyAV CCTTC 5 cut(s) 322, 747, 1161, 1332, 1365
HpyCH4III ACNGT 2 cut(s) 937, 978
HpyCH4IV ACGT 2 cut(s) 273, 950
HpyF10VI GCNNNNNNNGC 7 cut(s) 398, 407, 653, 662, 1063, 1294, 1309
HpyF3I CTNAG 6 cut(s) 231, 699, 729, 1026, 1113, 1266
HpySE526I ACGT 2 cut(s) 273, 950
Hsp92II CATG 3 cut(s) 230, 1163, 1443
HspAI GCGC 1 cut(s) 1145
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 5 cut(s) 39, 117, 724, 748, 823
LguI GCTCTTC 1 cut(s) 18
LmnI GCTCC 2 cut(s) 287, 1177
Lsp1109I GCAGC 4 cut(s) 401, 1111, 1129, 1134
LweI GCATC 8 cut(s) 376, 602, 872, 930, 978, 1044, 1075, 1290
MabI ACCWGGT 1 cut(s) 781
MaeI CTAG 3 cut(s) 203, 1125, 1178
MaeII ACGT 2 cut(s) 273, 950
MaeIII GTNAC 2 cut(s) 1045, 1184
MalI GATC 5 cut(s) 41, 119, 726, 750, 825
MboI GATC 5 cut(s) 39, 117, 724, 748, 823
MboII GAAGA 5 cut(s) 5, 11, 593, 1023, 1325
MfeI CAATTG 2 cut(s) 1292, 1403
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 2 cut(s) 700, 781
MlsI TGGCCA 1 cut(s) 30
MluNI TGGCCA 1 cut(s) 30
MmeI TCCRAC 2 cut(s) 373, 901
Mox20I TGGCCA 1 cut(s) 30
Mph1103I ATGCAT 1 cut(s) 865
MscI TGGCCA 1 cut(s) 30
MseI TTAA 5 cut(s) 413, 522, 624, 668, 962
MslI CAYNNNNRTG 2 cut(s) 606, 1052
Msp20I TGGCCA 1 cut(s) 30
MspA1I CMGCKG 1 cut(s) 1142
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 4 cut(s) 435, 527, 783, 917
MunI CAATTG 2 cut(s) 1292, 1403
MvaI CCWGG 4 cut(s) 435, 527, 783, 917
MwoI GCNNNNNNNGC 7 cut(s) 398, 407, 653, 662, 1063, 1294, 1309
NdeII GATC 5 cut(s) 39, 117, 724, 748, 823
NlaIII CATG 3 cut(s) 230, 1163, 1443
NlaIV GGNNCC 5 cut(s) 152, 676, 726, 921, 1353
NmuCI GTSAC 2 cut(s) 1045, 1184
NsiI ATGCAT 1 cut(s) 865
NspI RCATGY 1 cut(s) 1443
OliI CACNNNNGTG 1 cut(s) 606
PagI TCATGA 1 cut(s) 1159
PciI ACATGT 1 cut(s) 1439
PciSI GCTCTTC 1 cut(s) 18
PfeI GAWTC 2 cut(s) 833, 1393
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 4 cut(s) 391, 1101, 1144, 1149
PscI ACATGT 1 cut(s) 1439
PsiI TTATAA 1 cut(s) 1230
Psp1406I AACGTT 1 cut(s) 950
Psp6I CCWGG 4 cut(s) 433, 525, 781, 915
PspGI CCWGG 4 cut(s) 433, 525, 781, 915
PspN4I GGNNCC 5 cut(s) 152, 676, 726, 921, 1353
PspPI GGNCC 2 cut(s) 788, 1433
PstNI CAGNNNCTG 2 cut(s) 1069, 1390
PsuI RGATCY 1 cut(s) 724
PsyI GACNNNGTC 1 cut(s) 308
PvuII CAGCTG 1 cut(s) 1142
RsaI GTAC 4 cut(s) 164, 495, 794, 1401
RsaNI GTAC 4 cut(s) 163, 494, 793, 1400
RseI CAYNNNNRTG 2 cut(s) 606, 1052
SapI GCTCTTC 1 cut(s) 18
SaqAI TTAA 5 cut(s) 413, 522, 624, 668, 962
SatI GCNGC 4 cut(s) 390, 1100, 1143, 1148
Sau3AI GATC 5 cut(s) 39, 117, 724, 748, 823
Sau96I GGNCC 2 cut(s) 788, 1433
ScrFI CCNGG 4 cut(s) 435, 527, 783, 917
SduI GDGCHC 2 cut(s) 700, 781
SexAI ACCWGGT 1 cut(s) 781
SfaNI GCATC 8 cut(s) 376, 602, 872, 930, 978, 1044, 1075, 1290
SfcI CTRYAG 1 cut(s) 933
SinI GGWCC 1 cut(s) 788
SmiMI CAYNNNNRTG 2 cut(s) 606, 1052
SmlI CTYRAG 1 cut(s) 1035
SmoI CTYRAG 1 cut(s) 1035
SsiI CCGC 3 cut(s) 337, 615, 722
SspI AATATT 1 cut(s) 558
SspMI CTAG 3 cut(s) 203, 1125, 1178
StyD4I CCNGG 4 cut(s) 433, 525, 781, 915
StyI CCWWGG 2 cut(s) 487, 737
TaaI ACNGT 2 cut(s) 937, 978
TaiI ACGT 2 cut(s) 276, 953
TaqI TCGA 4 cut(s) 38, 95, 312, 751
TatI WGTACW 1 cut(s) 1399
TfiI GAWTC 2 cut(s) 833, 1393
Tru1I TTAA 5 cut(s) 413, 522, 624, 668, 962
Tru9I TTAA 5 cut(s) 413, 522, 624, 668, 962
TscAI CASTG 4 cut(s) 138, 640, 781, 942
TseFI GTSAC 2 cut(s) 1045, 1184
TseI GCWGC 4 cut(s) 389, 1099, 1142, 1147
Tsp45I GTSAC 2 cut(s) 1045, 1184
TspDTI ATGAA 1 cut(s) 1269
TspGWI ACGGA 4 cut(s) 281, 780, 1064, 1330
TspRI CASTG 4 cut(s) 138, 640, 781, 942
Tth111I GACNNNGTC 1 cut(s) 308
VneI GTGCAC 1 cut(s) 777
VpaK11BI GGWCC 1 cut(s) 788
XapI RAATTY 6 cut(s) 249, 461, 626, 850, 882, 1089
XbaI TCTAGA 1 cut(s) 1177
XceI RCATGY 1 cut(s) 1443
XcmI CCANNNNNNNNNTGG 1 cut(s) 640
XspI CTAG 3 cut(s) 203, 1125, 1178
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.