RchiOBHm_Chr3g0493431

Pentatricopeptide repeat-containing protein At1g77360, mitochondrial-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0014786
Physical Location & Seq
Reverse (-)
40593428 .. 40594485
1058 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 957 bp
ATGAGCAGAACAAAGCGACACCGTGATTACCCACCTGCTTCCTCTCCTTGTCGAAACCCTAATCAACCCGAACCCGAACCCGAACCCGCGAAGAAGCACCACCAATCCGACCCTACCTTTCCCTCATACCTGGACACTCCCAATCCCTTACCTCCCAAAATCAAACTGCTGTGTGCAATTGTGGCCGAAATCCACGGTCTCTCCGTCGAAGAAACTTTGAACGACACTGGTATTCGAGTGACCCAGCAAGACGTTGAAGAGGTCCTCAAGCTCTCCTACGCCTTCCCGGGCCCTGCCTTCAAGTTCTTTCAGTGGTCCGGTCGTCAGCTCAATGAAGGCCACAGCCCATATTCGTGGAATCTGGTTGTTGATCTCTTGGGCAAGAATTGCTTATTTGATCCCATGTGGGACGCCATCAAGTCAATGAAGCAAGAAAGGTTACTCTCTTTGGCCACTTTTGCTTCTGTGTTTAGTAGTTATGTAGTTGCCCATCGCACTCCCGAGGCTCTTATGACATTTGAGGTTATGGACCAATATGGTGTTCCTACAGATATTGTAGCATTGAATTCTCTTTTGAGTGCAATTTGTAGAGATGGCAAGACGACCGATGCCCTTGATTTTTACTACATTGCTAAGGACAAGATCAGGCCGGACCCCGATACTTACGCCATCTTGTTGGAGGGGTGGGAGAGTGAAGGGAATGTAGCCTCTGCTACCAAGGTTTTGGATGAGATGGTGAGTCACATTGGTTGGGATCCAACCAATGTGCCTGCCTACGATTCATATCTGAACACTTTGCTTAACGGGCCTAATGGGATTCGCGAGGCGCTGGACTTCTTTGAGACCTTGAAAGCTAAGAGGTGTTATCCAGGGGTCAAGTTTTTCAGGCTTGCGCTTGATGAGTGTGTCAAGAAAGGTGATCCTAGGGGGCTGAGGCTCTTTGGGAGGCAATGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

318

Amino Acids

35.9

Weight (kDa)

5.71

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 184 - 228 7.5e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014786)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g03480
malus_domestica MD09G1262300.v1.1
prunus_persica Prupe.3G160100_v2.0.a1
pyrus_communis pycom09g17670
rosa_chinensis RchiOBHm_Chr3g0493431
rosa_laevigata RLG00000022714
rosa_multiflora Rmu_co8321897.1_g000001 Rmu_sc0003935.1_g000001 Rmu_sc0019660.1_g000001
rosa_roxburghii Rroxscaffold_6G00391590
rosa_rugosa Rorug03G0261000
rosa_samantha Rh3AG310100 Rh3BG346200 Rh3CG343800 Rh3DG345200
rosa_wichuraiana Rw0G011150 Rw3G027240

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccII CGCG 2 cut(s) 89, 822
AciI CCGC 1 cut(s) 87
AclWI GGATC 4 cut(s) 392, 749, 762, 914
AcoI YGGCCR 2 cut(s) 183, 450
AcsI RAATTY 1 cut(s) 565
AcyI GRCGYC 1 cut(s) 411
AgsI TTSAA 5 cut(s) 220, 257, 301, 565, 850
AjnI CCWGG 2 cut(s) 129, 868
AjuI GAANNNNNNNTTGG 2 cut(s) 525, 557
AluBI AGCT 3 cut(s) 271, 328, 854
AluI AGCT 3 cut(s) 271, 328, 854
Alw26I GTCTC 2 cut(s) 203, 836
AlwI GGATC 4 cut(s) 392, 749, 762, 914
Ama87I CYCGRG 2 cut(s) 286, 500
AoxI GGCC 6 cut(s) 183, 289, 337, 450, 647, 806
ApaI GGGCCC 1 cut(s) 293
ApoI RAATTY 1 cut(s) 565
AspA2I CCTAGG 1 cut(s) 923
AspLEI GCGC 2 cut(s) 829, 895
AspS9I GGNCC 7 cut(s) 262, 289, 290, 315, 529, 652, 806
AsuC2I CCSGG 2 cut(s) 287, 288
AsuHPI GGTGA 2 cut(s) 748, 929
AvaI CYCGRG 2 cut(s) 286, 500
AvaII GGWCC 4 cut(s) 262, 315, 529, 652
AvrII CCTAGG 1 cut(s) 923
BaeGI GKGCMC 1 cut(s) 293
BalI TGGCCA 1 cut(s) 452
BamHI GGATCC 1 cut(s) 754
BanII GRGCYC 1 cut(s) 293
BbvCI CCTCAGC 1 cut(s) 932
BccI CCATC 5 cut(s) 422, 498, 587, 677, 727
BciT130I CCWGG 2 cut(s) 131, 870
BcnI CCSGG 2 cut(s) 287, 288
BcoDI GTCTC 2 cut(s) 203, 836
BfaI CTAG 1 cut(s) 924
BfmI CTRYAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 830
BfuAI ACCTGC 1 cut(s) 43
BlnI CCTAGG 1 cut(s) 923
Bme1390I CCNGG 4 cut(s) 131, 287, 288, 870
Bme18I GGWCC 4 cut(s) 262, 315, 529, 652
BmeT110I CYCGRG 2 cut(s) 286, 500
BmgT120I GGNCC 7 cut(s) 262, 289, 290, 315, 529, 652, 806
BmiI GGNNCC 3 cut(s) 291, 654, 756
BmrFI CCNGG 4 cut(s) 131, 287, 288, 870
BmsI GCATC 1 cut(s) 598
Bpu10I CCTNAGC 2 cut(s) 633, 932
BpuEI CTTGAG 1 cut(s) 251
BpuMI CCSGG 2 cut(s) 287, 288
BsaBI GATNNNNATC 1 cut(s) 783
BsaHI GRCGYC 1 cut(s) 411
BsaI GGTCTC 2 cut(s) 203, 836
BsaJI CCNNGG 6 cut(s) 193, 286, 501, 717, 869, 923
BsaWI WCCGGW 1 cut(s) 317
BsaXI ACNNNNNCTCC 2 cut(s) 185, 215
Bse1I ACTGG 1 cut(s) 232
Bse3DI GCAATG 2 cut(s) 627, 956
Bse8I GATNNNNATC 1 cut(s) 783
BseBI CCWGG 2 cut(s) 131, 870
BseDI CCNNGG 6 cut(s) 193, 286, 501, 717, 869, 923
BseGI GGATG 1 cut(s) 733
BseJI GATNNNNATC 1 cut(s) 783
BseMI GCAATG 2 cut(s) 627, 956
BseMII CTCAG 1 cut(s) 923
BseNI ACTGG 1 cut(s) 232
BseSI GKGCMC 1 cut(s) 293
BseYI CCCAGC 1 cut(s) 243
Bsh1236I CGCG 2 cut(s) 89, 822
Bsh1285I CGRYCG 2 cut(s) 322, 606
BshFI GGCC 6 cut(s) 185, 291, 339, 452, 649, 808
BsiEI CGRYCG 2 cut(s) 322, 606
BsiHKCI CYCGRG 2 cut(s) 286, 500
BsiSI CCGG 3 cut(s) 287, 318, 650
BslFI GGGAC 1 cut(s) 422
BsmAI GTCTC 2 cut(s) 203, 836
BsmFI GGGAC 1 cut(s) 422
BsnI GGCC 6 cut(s) 185, 291, 339, 452, 649, 808
Bso31I GGTCTC 2 cut(s) 203, 836
BsoBI CYCGRG 2 cut(s) 286, 500
Bsp120I GGGCCC 1 cut(s) 289
Bsp1286I GDGCHC 1 cut(s) 293
Bsp143I GATC 5 cut(s) 370, 397, 642, 754, 919
Bsp68I TCGCGA 1 cut(s) 822
BspACI CCGC 1 cut(s) 87
BspANI GGCC 6 cut(s) 185, 291, 339, 452, 649, 808
BspCNI CTCAG 1 cut(s) 924
BspFNI CGCG 2 cut(s) 89, 822
BspLI GGNNCC 3 cut(s) 291, 654, 756
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 4 cut(s) 392, 749, 762, 914
BspTNI GGTCTC 2 cut(s) 203, 836
BsrDI GCAATG 2 cut(s) 627, 956
BsrI ACTGG 1 cut(s) 232
BssECI CCNNGG 6 cut(s) 193, 286, 501, 717, 869, 923
BssMI GATC 5 cut(s) 370, 397, 642, 754, 919
BssNI GRCGYC 1 cut(s) 411
BssT1I CCWWGG 2 cut(s) 717, 923
Bst2UI CCWGG 2 cut(s) 131, 870
Bst4CI ACNGT 2 cut(s) 23, 197
Bst6I CTCTTC 1 cut(s) 252
BstACI GRCGYC 1 cut(s) 411
BstAPI GCANNNNNTGC 1 cut(s) 387
BstC8I GCNNGC 2 cut(s) 771, 891
BstDEI CTNAG 3 cut(s) 633, 855, 932
BstDSI CCRYGG 1 cut(s) 193
BstF5I GGATG 1 cut(s) 733
BstFNI CGCG 2 cut(s) 89, 822
BstH2I RGCGCY 1 cut(s) 830
BstHHI GCGC 2 cut(s) 829, 895
BstKTI GATC 5 cut(s) 373, 400, 645, 757, 922
BstMAI GTCTC 2 cut(s) 203, 836
BstMBI GATC 5 cut(s) 370, 397, 642, 754, 919
BstMCI CGRYCG 2 cut(s) 322, 606
BstMWI GCNNNNNNNGC 4 cut(s) 182, 387, 458, 805
BstNI CCWGG 2 cut(s) 131, 870
BstSCI CCNGG 4 cut(s) 129, 285, 286, 868
BstSFI CTRYAG 1 cut(s) 546
BstSLI GKGCMC 1 cut(s) 293
BstUI CGCG 2 cut(s) 89, 822
BstX2I RGATCY 1 cut(s) 754
BstXI CCANNNNNNTGG 3 cut(s) 354, 676, 724
BstYI RGATCY 1 cut(s) 754
BsuRI GGCC 6 cut(s) 185, 291, 339, 452, 649, 808
BtgI CCRYGG 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 476
BtsCI GGATG 1 cut(s) 733
BtsIMutI CAGTG 2 cut(s) 225, 317
BtuMI TCGCGA 1 cut(s) 822
BveI ACCTGC 1 cut(s) 43
Cac8I GCNNGC 2 cut(s) 771, 891
CfoI GCGC 2 cut(s) 829, 895
Cfr13I GGNCC 7 cut(s) 262, 289, 290, 315, 529, 652, 806
Cfr9I CCCGGG 1 cut(s) 286
CseI GACGC 1 cut(s) 419
CviAII CATG 1 cut(s) 403
DdeI CTNAG 3 cut(s) 633, 855, 932
DpnI GATC 5 cut(s) 372, 399, 644, 756, 921
DpnII GATC 5 cut(s) 370, 397, 642, 754, 919
EaeI YGGCCR 2 cut(s) 183, 450
Eam1104I CTCTTC 1 cut(s) 252
EarI CTCTTC 1 cut(s) 252
Eco130I CCWWGG 2 cut(s) 717, 923
Eco24I GRGCYC 1 cut(s) 293
Eco31I GGTCTC 2 cut(s) 203, 836
Eco47I GGWCC 4 cut(s) 262, 315, 529, 652
Eco88I CYCGRG 2 cut(s) 286, 500
EcoO109I RGGNCCY 2 cut(s) 262, 290
EcoRI GAATTC 1 cut(s) 565
EcoRII CCWGG 2 cut(s) 129, 868
EcoT14I CCWWGG 2 cut(s) 717, 923
EcoT38I GRGCYC 1 cut(s) 293
ErhI CCWWGG 2 cut(s) 717, 923
FaeI CATG 1 cut(s) 406
FaiI YATR 8 cut(s) 127, 349, 404, 480, 512, 527, 537, 784
FalI AAGNNNNNCTT 2 cut(s) 374, 406
FaqI GGGAC 1 cut(s) 422
FatI CATG 1 cut(s) 402
FauI CCCGC 1 cut(s) 94
FokI GGATG 1 cut(s) 740
FriOI GRGCYC 1 cut(s) 293
FspBI CTAG 1 cut(s) 924
GlaI GCGC 2 cut(s) 828, 894
GsaI CCCAGC 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 830
HaeIII GGCC 6 cut(s) 185, 291, 339, 452, 649, 808
HapII CCGG 3 cut(s) 287, 318, 650
HgaI GACGC 1 cut(s) 419
HhaI GCGC 2 cut(s) 829, 895
Hin1I GRCGYC 1 cut(s) 411
Hin1II CATG 1 cut(s) 406
Hin6I GCGC 2 cut(s) 827, 893
HinP1I GCGC 2 cut(s) 827, 893
HinfI GANTC 4 cut(s) 358, 739, 779, 817
HpaII CCGG 3 cut(s) 287, 318, 650
HphI GGTGA 2 cut(s) 748, 929
Hpy188I TCNGA 2 cut(s) 109, 789
Hpy188III TCNNGA 3 cut(s) 500, 821, 910
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 4 cut(s) 292, 307, 329, 689
HpyCH4III ACNGT 2 cut(s) 23, 197
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 2 cut(s) 176, 581
HpyF10VI GCNNNNNNNGC 4 cut(s) 182, 387, 458, 805
HpyF3I CTNAG 3 cut(s) 633, 855, 932
HpySE526I ACGT 1 cut(s) 252
Hsp92I GRCGYC 1 cut(s) 411
Hsp92II CATG 1 cut(s) 406
HspAI GCGC 2 cut(s) 827, 893
Kzo9I GATC 5 cut(s) 370, 397, 642, 754, 919
LweI GCATC 1 cut(s) 598
MaeI CTAG 1 cut(s) 924
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 3 cut(s) 238, 438, 740
MalI GATC 5 cut(s) 372, 399, 644, 756, 921
MboI GATC 5 cut(s) 370, 397, 642, 754, 919
MboII GAAGA 3 cut(s) 103, 221, 269
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 754
MhlI GDGCHC 1 cut(s) 293
MlsI TGGCCA 1 cut(s) 452
MluCI AATT 4 cut(s) 177, 385, 565, 582
MluNI TGGCCA 1 cut(s) 452
MlyI GAGTC 1 cut(s) 748
MmeI TCCRAC 3 cut(s) 132, 657, 782
Mox20I TGGCCA 1 cut(s) 452
MscI TGGCCA 1 cut(s) 452
MseI TTAA 1 cut(s) 801
MslI CAYNNNNRTG 1 cut(s) 352
Msp20I TGGCCA 1 cut(s) 452
MspI CCGG 3 cut(s) 287, 318, 650
MspR9I CCNGG 4 cut(s) 131, 287, 288, 870
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 2 cut(s) 131, 870
MvnI CGCG 2 cut(s) 89, 822
MwoI GCNNNNNNNGC 4 cut(s) 182, 387, 458, 805
NciI CCSGG 2 cut(s) 287, 288
NdeII GATC 5 cut(s) 370, 397, 642, 754, 919
NlaIII CATG 1 cut(s) 406
NlaIV GGNNCC 3 cut(s) 291, 654, 756
NmuCI GTSAC 2 cut(s) 238, 740
NruI TCGCGA 1 cut(s) 822
PaqCI CACCTGC 1 cut(s) 43
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PfeI GAWTC 3 cut(s) 358, 779, 817
PleI GAGTC 1 cut(s) 747
PpsI GAGTC 1 cut(s) 747
PpuMI RGGWCCY 1 cut(s) 262
Psp5II RGGWCCY 1 cut(s) 262
Psp6I CCWGG 2 cut(s) 129, 868
PspFI CCCAGC 1 cut(s) 243
PspGI CCWGG 2 cut(s) 129, 868
PspN4I GGNNCC 3 cut(s) 291, 654, 756
PspOMI GGGCCC 1 cut(s) 289
PspPI GGNCC 7 cut(s) 262, 289, 290, 315, 529, 652, 806
PspPPI RGGWCCY 1 cut(s) 262
PsuI RGATCY 1 cut(s) 754
RruI TCGCGA 1 cut(s) 822
RseI CAYNNNNRTG 1 cut(s) 352
SaqAI TTAA 1 cut(s) 801
Sau3AI GATC 5 cut(s) 370, 397, 642, 754, 919
Sau96I GGNCC 7 cut(s) 262, 289, 290, 315, 529, 652, 806
SchI GAGTC 1 cut(s) 748
ScrFI CCNGG 4 cut(s) 131, 287, 288, 870
SduI GDGCHC 1 cut(s) 293
SfaNI GCATC 1 cut(s) 598
SfcI CTRYAG 1 cut(s) 546
SinI GGWCC 4 cut(s) 262, 315, 529, 652
SmaI CCCGGG 1 cut(s) 288
SmiMI CAYNNNNRTG 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 4 cut(s) 177, 385, 565, 582
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 924
StyD4I CCNGG 4 cut(s) 129, 285, 286, 868
StyI CCWWGG 2 cut(s) 717, 923
TaaI ACNGT 2 cut(s) 23, 197
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 52, 207, 235
TaqII GACCGA 1 cut(s) 620
TasI AATT 4 cut(s) 177, 385, 565, 582
TfiI GAWTC 3 cut(s) 358, 779, 817
Tru1I TTAA 1 cut(s) 801
Tru9I TTAA 1 cut(s) 801
TscAI CASTG 2 cut(s) 232, 317
TseFI GTSAC 2 cut(s) 238, 740
Tsp45I GTSAC 2 cut(s) 238, 740
TspDTI ATGAA 3 cut(s) 348, 440, 771
TspGWI ACGGA 1 cut(s) 193
TspMI CCCGGG 1 cut(s) 286
TspRI CASTG 2 cut(s) 232, 317
VpaK11BI GGWCC 4 cut(s) 262, 315, 529, 652
XapI RAATTY 1 cut(s) 565
XmaI CCCGGG 1 cut(s) 286
XmaJI CCTAGG 1 cut(s) 923
XspI CTAG 1 cut(s) 924
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.