Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010943

Physical Location & Seq

Genomic Coordinates Forward (+)

43574420 .. 43577981

Gene Structure 3562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGGAAAGACTGAAGGAGAGCAGGGTTCGGTTTCCAGTGCGGGCTCTGACCACCCCTCATCCCAAAATGCAGAGACTCACTACTGTCCTTGTTGGTATGATAGGAGGATTCGGACCCTGATTGGCCTCAGATGCATTTTGGTTCTCTTTCTCTCTTTTGCTTTGTTCCTCTCTGCAATGTTCTGGTTACCTCCATTTCTTCAGTTTGCGGATCACGGCGATCTGGATCTTGATCCAAAGTTCAGAGATCATTCTATAGTAGCAAGTTTCAATCTTCGGAAGCCAGTTTCTTTGCTGGAGGATAATGTCTTGCAGCTTGAAGATAACATTTTTGATGAGATAGTTGCTCCGTCAACTAAAGTGGTTATCCTATCTCTGAAATCCTTAGCTGGATCAAATGTAACAAGAGTCGTATTTGGGGTTGATCCTGACCCAGAATCATCAAAGTTGTTGCCAACTTCTCAAAGTTTGATCAAAGAAAATTTTGAATATCTGGTCACACACCAATCACTGAGCCTAAATACATCCTTGTTTGGGAACACATCCTTTTTCGAGGTGCTAAAATTTCCAGATGGAATTACCATAATTCCACCACAGAAAGCGTTTCTTCTGCAGAAAGTGCAAATCCTTTTCAATTTCACCTTAAACTTCTCTATCTATCAAATACAACTAAATTTCAATGAACTGGAAAGCCAGCTGAAGTCTGGGTTACATCTAGCACCCTATGAGAACCTTTATGTTAGCTTGTCAAATTCAAAAGGTTCAACAGTGGCAGCCCCTACTACTGTTCAGTCATCTGTTCTATTGACGGTTGGCAATACTCCTTCAATGCAAAGATTAAAACAACTGGCTCAAACCATCACACATTCTCATTCAAGAAACCTGGGCCTGAATAATACGGTATTTGGTAGAGTCAAGCAAGTTCGTCTTTCATCTATTTTGCAACATTCCCTCAATGGTGGAGATGGCACTGCGTGGTCGCCTTCTCCTGCTCCATTGCCTCATCCCCACCCCCCCATCACGCCCACCATCACCATCACCACCACCACCACCATCGCCATCACCACAATTCCCAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

359

Amino Acids

39.53

Weight (kDa)

6.59

Isoelectric Point (pI)

40.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7036	PF23041	89 - 179	1.1e-27	Domain of unknown function (DUF7036)
DUF7036	PF23041	212 - 303	1.9e-23	Domain of unknown function (DUF7036)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010943)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G56590 AT3G56590
fragaria_vesca	FvH4_1g29240 FvH4_1g29240 FvH4_1g29240 FvH4_1g29240
prunus_persica	Prupe.7G019800_v2.0.a1 Prupe.7G019800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0494681
rosa_laevigata	RLG00000022664
rosa_multiflora	Rmu_sc0000840.1_g000020
rosa_roxburghii	Rroxscaffold_6G00390970
rosa_rugosa	Rorug03G0268000 Rorug03G0268000 Rorug03G0268000
rosa_samantha	Rh3AG316500 Rh3BG351800 Rh3CG348800 Rh3DG351400
rosa_wichuraiana	Rw3G027620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	41, 209
AclWI	GGATC	5 cut(s)	219, 227, 234, 400, 419
AcsI	RAATTY	4 cut(s)	481, 563, 673, 751
AcuI	CTGAAG	3 cut(s)	33, 185, 719
AdeI	CACNNNGTG	1 cut(s)	975
AfiI	CCNNNNNNNGG	1 cut(s)	534
AgsI	TTSAA	9 cut(s)	271, 320, 488, 634, 679, 756, 765, 828, 876
AjnI	CCWGG	1 cut(s)	882
AluBI	AGCT	5 cut(s)	316, 389, 697, 744, 1077
AluI	AGCT	5 cut(s)	316, 389, 697, 744, 1077
Alw26I	GTCTC	1 cut(s)	68
AlwI	GGATC	5 cut(s)	219, 227, 234, 400, 419
AoxI	GGCC	2 cut(s)	124, 886
ApeKI	GCWGC	2 cut(s)	313, 773
ApoI	RAATTY	4 cut(s)	481, 563, 673, 751
AspS9I	GGNCC	2 cut(s)	114, 886
AsuHPI	GGTGA	4 cut(s)	631, 1024, 1030, 1054
AvaII	GGWCC	1 cut(s)	114
BanII	GRGCYC	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	325, 785
BccI	CCATC	8 cut(s)	566, 866, 959, 1025, 1037, 1043, 1061, 1067
BceAI	ACGGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	884
BclI	TGATCA	1 cut(s)	471
BcoDI	GTCTC	1 cut(s)	68
BfaI	CTAG	2 cut(s)	716, 1078
BfmI	CTRYAG	2 cut(s)	255, 611
BisI	GCNGC	2 cut(s)	314, 774
BlsI	GCNGC	2 cut(s)	315, 775
Bme1390I	CCNGG	1 cut(s)	884
Bme18I	GGWCC	1 cut(s)	114
BmgT120I	GGNCC	2 cut(s)	114, 886
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	1 cut(s)	884
BmsI	GCATC	1 cut(s)	122
BpmI	CTGGAG	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	385
BsaBI	GATNNNNATC	2 cut(s)	225, 231
BsaJI	CCNNGG	1 cut(s)	883
Bsc4I	CCNNNNNNNGG	1 cut(s)	534
Bse1I	ACTGG	4 cut(s)	36, 284, 690, 852
Bse3DI	GCAATG	2 cut(s)	183, 995
Bse8I	GATNNNNATC	2 cut(s)	225, 231
BseBI	CCWGG	1 cut(s)	884
BseDI	CCNNGG	1 cut(s)	883
BseGI	GGATG	4 cut(s)	59, 524, 542, 1003
BseJI	GATNNNNATC	2 cut(s)	225, 231
BseLI	CCNNNNNNNGG	1 cut(s)	534
BseMI	GCAATG	2 cut(s)	183, 995
BseMII	CTCAG	2 cut(s)	142, 503
BseNI	ACTGG	4 cut(s)	36, 284, 690, 852
BseXI	GCAGC	2 cut(s)	325, 785
BseYI	CCCAGC	1 cut(s)	1073
BshFI	GGCC	2 cut(s)	126, 888
BslI	CCNNNNNNNGG	1 cut(s)	534
BsmAI	GTCTC	1 cut(s)	68
BsnI	GGCC	2 cut(s)	126, 888
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	8 cut(s)	211, 220, 226, 232, 247, 392, 424, 471
BspACI	CCGC	2 cut(s)	41, 209
BspANI	GGCC	2 cut(s)	126, 888
BspCNI	CTCAG	2 cut(s)	141, 504
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	615
BspPI	GGATC	5 cut(s)	219, 227, 234, 400, 419
BsrDI	GCAATG	2 cut(s)	183, 995
BsrI	ACTGG	4 cut(s)	36, 284, 690, 852
BssECI	CCNNGG	1 cut(s)	883
BssMI	GATC	8 cut(s)	211, 220, 226, 232, 247, 392, 424, 471
Bst2UI	CCWGG	1 cut(s)	884
Bst4CI	ACNGT	5 cut(s)	86, 769, 787, 811, 901
BstAPI	GCANNNNNTGC	1 cut(s)	619
BstC8I	GCNNGC	2 cut(s)	43, 695
BstDEI	CTNAG	3 cut(s)	128, 385, 512
BstEII	GGTNACC	1 cut(s)	186
BstF5I	GGATG	4 cut(s)	59, 524, 542, 1003
BstKTI	GATC	8 cut(s)	214, 223, 229, 235, 250, 395, 427, 474
BstMAI	GTCTC	1 cut(s)	68
BstMBI	GATC	8 cut(s)	211, 220, 226, 232, 247, 392, 424, 471
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 619
BstNI	CCWGG	1 cut(s)	884
BstPI	GGTNACC	1 cut(s)	186
BstSCI	CCNGG	1 cut(s)	882
BstSFI	CTRYAG	2 cut(s)	255, 611
BstV1I	GCAGC	2 cut(s)	325, 785
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	126, 888
BtgZI	GCGATG	1 cut(s)	1039
BtsCI	GGATG	4 cut(s)	59, 524, 542, 1003
BtsI	GCAGTG	1 cut(s)	969
BtsIMutI	CAGTG	4 cut(s)	43, 509, 774, 969
Cac8I	GCNNGC	2 cut(s)	43, 695
Cfr13I	GGNCC	2 cut(s)	114, 886
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
DdeI	CTNAG	3 cut(s)	128, 385, 512
DpnI	GATC	8 cut(s)	213, 222, 228, 234, 249, 394, 426, 473
DpnII	GATC	8 cut(s)	211, 220, 226, 232, 247, 392, 424, 471
DraIII	CACNNNGTG	1 cut(s)	975
Eco24I	GRGCYC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	114
Eco57I	CTGAAG	3 cut(s)	33, 185, 719
Eco91I	GGTNACC	1 cut(s)	186
EcoO65I	GGTNACC	1 cut(s)	186
EcoRII	CCWGG	1 cut(s)	882
EcoT22I	ATGCAT	1 cut(s)	137
EcoT38I	GRGCYC	1 cut(s)	47
FaiI	YATR	5 cut(s)	99, 257, 584, 726, 738
FalI	AAGNNNNNCTT	4 cut(s)	591, 623, 912, 944
FauI	CCCGC	1 cut(s)	34
FbaI	TGATCA	1 cut(s)	471
Fnu4HI	GCNGC	2 cut(s)	314, 774
FokI	GGATG	4 cut(s)	46, 511, 529, 990
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	2 cut(s)	314, 774
FspBI	CTAG	2 cut(s)	716, 1078
GluI	GCNGC	2 cut(s)	314, 774
GsaI	CCCAGC	1 cut(s)	1077
GsuI	CTGGAG	1 cut(s)	317
HaeIII	GGCC	2 cut(s)	126, 888
HincII	GTYRAC	1 cut(s)	354
HindII	GTYRAC	1 cut(s)	354
HinfI	GANTC	5 cut(s)	76, 109, 408, 437, 912
HphI	GGTGA	4 cut(s)	631, 1024, 1030, 1054
Hpy166II	GTNNAC	1 cut(s)	354
Hpy188I	TCNGA	6 cut(s)	49, 114, 131, 245, 279, 378
Hpy188III	TCNNGA	5 cut(s)	224, 230, 428, 569, 876
Hpy8I	GTNNAC	1 cut(s)	354
HpyAV	CCTTC	3 cut(s)	8, 834, 993
HpyCH4III	ACNGT	5 cut(s)	86, 769, 787, 811, 901
HpyCH4V	TGCA	8 cut(s)	71, 135, 176, 313, 613, 622, 832, 943
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 619
HpyF3I	CTNAG	3 cut(s)	128, 385, 512
Ksp22I	TGATCA	1 cut(s)	471
Kzo9I	GATC	8 cut(s)	211, 220, 226, 232, 247, 392, 424, 471
LmnI	GCTCC	2 cut(s)	352, 997
Lsp1109I	GCAGC	2 cut(s)	325, 785
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	2 cut(s)	716, 1078
MaeIII	GTNAC	4 cut(s)	186, 400, 496, 708
MalI	GATC	8 cut(s)	213, 222, 228, 234, 249, 394, 426, 473
MboI	GATC	8 cut(s)	211, 220, 226, 232, 247, 392, 424, 471
MboII	GAAGA	4 cut(s)	191, 266, 332, 599
MflI	RGATCY	1 cut(s)	226
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	8 cut(s)	481, 563, 576, 585, 634, 673, 751, 1068
MlyI	GAGTC	3 cut(s)	70, 417, 921
MnlI	CCTC	9 cut(s)	67, 99, 137, 179, 201, 292, 547, 962, 1011
Mph1103I	ATGCAT	1 cut(s)	137
MseI	TTAA	2 cut(s)	644, 839
MspA1I	CMGCKG	1 cut(s)	697
MspR9I	CCNGG	1 cut(s)	884
MvaI	CCWGG	1 cut(s)	884
MwoI	GCNNNNNNNGC	2 cut(s)	132, 619
NdeII	GATC	8 cut(s)	211, 220, 226, 232, 247, 392, 424, 471
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	496
NsiI	ATGCAT	1 cut(s)	137
PfeI	GAWTC	2 cut(s)	109, 437
PkrI	GCNGC	2 cut(s)	315, 775
PleI	GAGTC	3 cut(s)	70, 416, 920
PpsI	GAGTC	3 cut(s)	70, 416, 920
Psp6I	CCWGG	1 cut(s)	882
PspEI	GGTNACC	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	1073
PspGI	CCWGG	1 cut(s)	882
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	2 cut(s)	114, 886
PstI	CTGCAG	1 cut(s)	615
PsuI	RGATCY	1 cut(s)	226
PvuII	CAGCTG	1 cut(s)	697
SaqAI	TTAA	2 cut(s)	644, 839
SatI	GCNGC	2 cut(s)	314, 774
Sau3AI	GATC	8 cut(s)	211, 220, 226, 232, 247, 392, 424, 471
Sau96I	GGNCC	2 cut(s)	114, 886
SchI	GAGTC	3 cut(s)	70, 417, 921
ScrFI	CCNGG	1 cut(s)	884
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	1 cut(s)	122
SfcI	CTRYAG	2 cut(s)	255, 611
SinI	GGWCC	1 cut(s)	114
Sse9I	AATT	8 cut(s)	481, 563, 576, 585, 634, 673, 751, 1068
SsiI	CCGC	2 cut(s)	41, 209
SspMI	CTAG	2 cut(s)	716, 1078
StyD4I	CCNGG	1 cut(s)	882
TaaI	ACNGT	5 cut(s)	86, 769, 787, 811, 901
TaqI	TCGA	1 cut(s)	552
TasI	AATT	8 cut(s)	481, 563, 576, 585, 634, 673, 751, 1068
TfiI	GAWTC	2 cut(s)	109, 437
Tru1I	TTAA	2 cut(s)	644, 839
Tru9I	TTAA	2 cut(s)	644, 839
TscAI	CASTG	4 cut(s)	43, 516, 774, 976
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	2 cut(s)	313, 773
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	2 cut(s)	696, 921
TspGWI	ACGGA	1 cut(s)	339
TspRI	CASTG	4 cut(s)	43, 516, 774, 976
VpaK11BI	GGWCC	1 cut(s)	114
XapI	RAATTY	4 cut(s)	481, 563, 673, 751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	701
XspI	CTAG	2 cut(s)	716, 1078
Zsp2I	ATGCAT	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.