Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015742

Physical Location & Seq

Genomic Coordinates Forward (+)

47266311 .. 47268769

Gene Structure 2459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 141 bp

ATGGTGAAGATTATCAAGGCTGGTCTTATAAGCGCTTATATCATAAAAACACTCTACTTTGGAAGGCATTCTACAGATCGTGAAGTTGCTCTCATGATGCTTATGGCTTATTTGTCGTACATGTTGGCTGAGGTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

46

Amino Acids

5.25

Weight (kDa)

9.22

Isoelectric Point (pI)

21.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015742)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496461 RchiOBHm_Chr6g0290591
rosa_laevigata	RLG00000010223 RLG00000024315 RLG00000030193 RLG00000033623 RLG00000033687 RLG00000034505
rosa_roxburghii	Rroxscaffold_2G00106860
rosa_samantha	Rh2AG158200 Rh2BG164700 Rh3AG329100 Rh5DG468000 Rh6AG265500 Rh6BG316400 Rh7CG240900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	29
Acc65I	GGTACC	1 cut(s)	133
AccB1I	GGYRCC	1 cut(s)	133
AfaI	GTAC	2 cut(s)	119, 135
AfeI	AGCGCT	1 cut(s)	34
AflIII	ACRYGT	1 cut(s)	120
Aor51HI	AGCGCT	1 cut(s)	34
Asp700I	GAANNNNTTC	1 cut(s)	67
Asp718I	GGTACC	1 cut(s)	133
AspLEI	GCGC	1 cut(s)	35
AsuHPI	GGTGA	1 cut(s)	16
BanI	GGYRCC	1 cut(s)	133
BarI	GAAGNNNNNNTAC	2 cut(s)	55, 87
BbvCI	CCTCAGC	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	72
BfoI	RGCGCY	1 cut(s)	36
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	1 cut(s)	87
Bpu10I	CCTNAGC	1 cut(s)	129
BseMII	CTCAG	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	133
BsmI	GAATGC	1 cut(s)	67
Bsp143I	GATC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	135
BspT107I	GGYRCC	1 cut(s)	133
BssMI	GATC	1 cut(s)	76
BstDEI	CTNAG	1 cut(s)	129
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	1 cut(s)	79
BstMBI	GATC	1 cut(s)	76
BstNSI	RCATGY	1 cut(s)	124
BstSFI	CTRYAG	1 cut(s)	72
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	1 cut(s)	35
Csp6I	GTAC	2 cut(s)	118, 134
CviAII	CATG	2 cut(s)	94, 121
CviJI	RGCY	3 cut(s)	20, 107, 128
CviKI_1	RGCY	3 cut(s)	20, 107, 128
CviQI	GTAC	2 cut(s)	118, 134
DdeI	CTNAG	1 cut(s)	129
DpnI	GATC	1 cut(s)	78
DpnII	GATC	1 cut(s)	76
Eco47III	AGCGCT	1 cut(s)	34
FaeI	CATG	2 cut(s)	97, 124
FaiI	YATR	6 cut(s)	29, 39, 44, 95, 104, 122
FatI	CATG	2 cut(s)	93, 120
FspEI	CC	7 cut(s)	2, 6, 45, 49, 89, 110, 116
GlaI	GCGC	1 cut(s)	34
HaeII	RGCGCY	1 cut(s)	36
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	97, 124
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HphI	GGTGA	1 cut(s)	16
Hpy188III	TCNNGA	2 cut(s)	80, 94
HpyAV	CCTTC	1 cut(s)	57
HpyF3I	CTNAG	1 cut(s)	129
Hsp92II	CATG	2 cut(s)	97, 124
HspAI	GCGC	1 cut(s)	33
KpnI	GGTACC	1 cut(s)	137
Kzo9I	GATC	1 cut(s)	76
LpnPI	CCDG	1 cut(s)	6
LweI	GCATC	1 cut(s)	87
MalI	GATC	1 cut(s)	78
MboI	GATC	1 cut(s)	76
MboII	GAAGA	1 cut(s)	19
MnlI	CCTC	1 cut(s)	124
MroXI	GAANNNNTTC	1 cut(s)	67
Mva1269I	GAATGC	1 cut(s)	67
NdeII	GATC	1 cut(s)	76
NlaIII	CATG	2 cut(s)	97, 124
NlaIV	GGNNCC	1 cut(s)	135
NspI	RCATGY	1 cut(s)	124
PagI	TCATGA	1 cut(s)	93
PciI	ACATGT	1 cut(s)	120
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	67
PscI	ACATGT	1 cut(s)	120
PsiI	TTATAA	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	135
RsaI	GTAC	2 cut(s)	119, 135
RsaNI	GTAC	2 cut(s)	118, 134
Sau3AI	GATC	1 cut(s)	76
SetI	ASST	1 cut(s)	135
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	72
SgeI	CNNG	5 cut(s)	28, 33, 92, 106, 133
XceI	RCATGY	1 cut(s)	124
XmnI	GAANNNNTTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.