Rh6AG265500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015742
Physical Location & Seq
Forward (+)
45734786 .. 45737395
2610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG265500.1

Sequence Viewer

Length: 402 bp
ATGAGAGTTACCGGACGGGATGTTCCTCTCCGGGAAGTTTGGGTTTCTGTTAGATCTGGAGTAGGACTCGGTTCACACATCTCTATTCACCGTAGCTCTGCCTCTCTCTCTATACATGCCGACGTCCATTCTGCGTTATCTGTAGCAGCGCTCCGACATCATTTTCAGATATGTGGCAGGGCTCTCTCTATTAGAGTTGGATCTCGAGATACTTCATATTGTGTTCAGATCTATGGTAACCTCTCTGTTATTTCTGATTTTCCATGTTTTTTGCTATCGCCAGTTGTCTCTCCTCTTTCATGCATATCGATTGTGTTGATCTTCGATTGTAATTTGGTACTGTGCGAATTTCATTCGATTTGGGTGGATTTCATTTGGGTCTATTTAGAGCTCAAGATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.77

Weight (kDa)

7.7

Isoelectric Point (pI)

28.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 126
AclWI GGATC 1 cut(s) 208
AcsI RAATTY 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 123
AfaI GTAC 1 cut(s) 339
AfeI AGCGCT 1 cut(s) 150
AloI GAACNNNNNNTCC 1 cut(s) 38
AluBI AGCT 2 cut(s) 96, 391
AluI AGCT 2 cut(s) 96, 391
Alw21I GWGCWC 1 cut(s) 393
Alw26I GTCTC 1 cut(s) 292
AlwI GGATC 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 204
Aor51HI AGCGCT 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 1 cut(s) 151
AsuC2I CCSGG 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 204
BanII GRGCYC 2 cut(s) 184, 393
Bbv12I GWGCWC 1 cut(s) 393
BbvI GCAGC 1 cut(s) 158
BcnI CCSGG 1 cut(s) 32
BcoDI GTCTC 1 cut(s) 292
BfmI CTRYAG 1 cut(s) 141
BfoI RGCGCY 1 cut(s) 152
BglII AGATCT 3 cut(s) 53, 228, 396
BisI GCNGC 1 cut(s) 147
BlsI GCNGC 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 204
BmrFI CCNGG 1 cut(s) 32
BplI GAGNNNNNCTC 2 cut(s) 51, 83
BpmI CTGGAG 1 cut(s) 78
BpuEI CTTGAG 1 cut(s) 377
BpuMI CCSGG 1 cut(s) 32
Bsa29I ATCGAT 1 cut(s) 308
BsaHI GRCGYC 1 cut(s) 123
BsaWI WCCGGW 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 281
BseCI ATCGAT 1 cut(s) 308
BseGI GGATG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 281
BseRI GAGGAG 1 cut(s) 282
BseXI GCAGC 1 cut(s) 158
BshVI ATCGAT 1 cut(s) 308
BsiHKAI GWGCWC 1 cut(s) 393
BsiHKCI CYCGRG 1 cut(s) 204
BsiSI CCGG 2 cut(s) 12, 31
BsmAI GTCTC 1 cut(s) 292
BsoBI CYCGRG 1 cut(s) 204
Bsp1286I GDGCHC 2 cut(s) 184, 393
Bsp143I GATC 5 cut(s) 53, 200, 228, 318, 396
BspDI ATCGAT 1 cut(s) 308
BspPI GGATC 1 cut(s) 208
BsrI ACTGG 1 cut(s) 281
BssMI GATC 5 cut(s) 53, 200, 228, 318, 396
BssNI GRCGYC 1 cut(s) 123
Bst4CI ACNGT 2 cut(s) 92, 342
BstACI GRCGYC 1 cut(s) 123
BstEII GGTNACC 1 cut(s) 236
BstF5I GGATG 1 cut(s) 25
BstH2I RGCGCY 1 cut(s) 152
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 5 cut(s) 56, 203, 231, 321, 399
BstMAI GTCTC 1 cut(s) 292
BstMBI GATC 5 cut(s) 53, 200, 228, 318, 396
BstNSI RCATGY 1 cut(s) 119
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 30
BstSFI CTRYAG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 158
BstX2I RGATCY 4 cut(s) 53, 200, 228, 396
BstYI RGATCY 4 cut(s) 53, 200, 228, 396
Bsu15I ATCGAT 1 cut(s) 308
BsuTUI ATCGAT 1 cut(s) 308
BtsCI GGATG 1 cut(s) 25
CfoI GCGC 1 cut(s) 151
ClaI ATCGAT 1 cut(s) 308
Csp6I GTAC 1 cut(s) 338
CviAII CATG 3 cut(s) 116, 264, 300
CviJI RGCY 3 cut(s) 96, 182, 391
CviKI_1 RGCY 3 cut(s) 96, 182, 391
CviQI GTAC 1 cut(s) 338
DpnI GATC 5 cut(s) 55, 202, 230, 320, 398
DpnII GATC 5 cut(s) 53, 200, 228, 318, 396
Ecl136II GAGCTC 1 cut(s) 391
Eco24I GRGCYC 2 cut(s) 184, 393
Eco47III AGCGCT 1 cut(s) 150
Eco53kI GAGCTC 1 cut(s) 391
Eco88I CYCGRG 1 cut(s) 204
Eco91I GGTNACC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 391
EcoO65I GGTNACC 1 cut(s) 236
EcoT22I ATGCAT 1 cut(s) 305
EcoT38I GRGCYC 2 cut(s) 184, 393
FaeI CATG 3 cut(s) 119, 267, 303
FaiI YATR 8 cut(s) 113, 117, 172, 217, 234, 265, 301, 305
FatI CATG 3 cut(s) 115, 263, 299
Fnu4HI GCNGC 1 cut(s) 147
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 2 cut(s) 184, 393
Fsp4HI GCNGC 1 cut(s) 147
GlaI GCGC 1 cut(s) 150
GluI GCNGC 1 cut(s) 147
GsuI CTGGAG 1 cut(s) 78
HaeII RGCGCY 1 cut(s) 152
HapII CCGG 2 cut(s) 12, 31
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 1 cut(s) 123
Hin1II CATG 3 cut(s) 119, 267, 303
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HinfI GANTC 1 cut(s) 66
HpaII CCGG 2 cut(s) 12, 31
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 4 cut(s) 155, 168, 228, 256
Hpy188III TCNNGA 4 cut(s) 57, 204, 206, 394
Hpy8I GTNNAC 1 cut(s) 74
Hpy99I CGWCG 1 cut(s) 125
HpyCH4III ACNGT 2 cut(s) 92, 342
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 1 cut(s) 303
HpySE526I ACGT 1 cut(s) 123
Hsp92I GRCGYC 1 cut(s) 123
Hsp92II CATG 3 cut(s) 119, 267, 303
HspAI GCGC 1 cut(s) 149
Kzo9I GATC 5 cut(s) 53, 200, 228, 318, 396
LmnI GCTCC 1 cut(s) 156
LpnPI CCDG 5 cut(s) 25, 42, 44, 163, 294
Lsp1109I GCAGC 1 cut(s) 158
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 2 cut(s) 7, 236
MalI GATC 5 cut(s) 55, 202, 230, 320, 398
MboI GATC 5 cut(s) 53, 200, 228, 318, 396
MboII GAAGA 1 cut(s) 313
MflI RGATCY 4 cut(s) 53, 200, 228, 396
MhlI GDGCHC 2 cut(s) 184, 393
MluCI AATT 2 cut(s) 331, 347
MlyI GAGTC 1 cut(s) 60
MmeI TCCRAC 2 cut(s) 178, 178
MnlI CCTC 4 cut(s) 36, 112, 251, 303
Mph1103I ATGCAT 1 cut(s) 305
MspI CCGG 2 cut(s) 12, 31
MspR9I CCNGG 1 cut(s) 32
NciI CCSGG 1 cut(s) 32
NdeII GATC 5 cut(s) 53, 200, 228, 318, 396
NlaIII CATG 3 cut(s) 119, 267, 303
NsiI ATGCAT 1 cut(s) 305
NspI RCATGY 1 cut(s) 119
PaeR7I CTCGAG 1 cut(s) 204
PfoI TCCNGGA 1 cut(s) 30
PkrI GCNGC 1 cut(s) 148
PleI GAGTC 1 cut(s) 60
PpsI GAGTC 1 cut(s) 60
Psp124BI GAGCTC 1 cut(s) 393
PspEI GGTNACC 1 cut(s) 236
PsuI RGATCY 4 cut(s) 53, 200, 228, 396
RsaI GTAC 1 cut(s) 339
RsaNI GTAC 1 cut(s) 338
SacI GAGCTC 1 cut(s) 393
SatI GCNGC 1 cut(s) 147
Sau3AI GATC 5 cut(s) 53, 200, 228, 318, 396
SchI GAGTC 1 cut(s) 60
ScrFI CCNGG 1 cut(s) 32
SduI GDGCHC 2 cut(s) 184, 393
SetI ASST 4 cut(s) 98, 126, 243, 393
SfcI CTRYAG 1 cut(s) 141
Sfr274I CTCGAG 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 204
SmlI CTYRAG 2 cut(s) 204, 392
SmoI CTYRAG 2 cut(s) 204, 392
Sse9I AATT 2 cut(s) 331, 347
SstI GAGCTC 1 cut(s) 393
StyD4I CCNGG 1 cut(s) 30
TaaI ACNGT 2 cut(s) 92, 342
TaiI ACGT 1 cut(s) 126
TaqI TCGA 4 cut(s) 205, 308, 324, 356
TasI AATT 2 cut(s) 331, 347
TseI GCWGC 1 cut(s) 146
TspDTI ATGAA 4 cut(s) 204, 288, 341, 361
XapI RAATTY 1 cut(s) 347
XceI RCATGY 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 204
ZraI GACGTC 1 cut(s) 124
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.