Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015742

Physical Location & Seq

Genomic Coordinates Forward (+)

14494021 .. 14501018

Gene Structure 6998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG164700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCTTTCTCCAACTCTCTCCTACTCTTTTAGACGAACCAAAAGAAGGAGCCTTTCACCGCTAAAATTCCATAGAAGCCCAAGAAGAAGATTACCAACTGACCAGGAACTTGAACAAGAGGCGCATCAACCTCCTGATCTTTCACACCTTCAGGGGAGGTTAAAAGAGATCTGCTATTTTACCATGGTGAAGATTATCAAGGCTGGTCTTATAAGCGCTTATATCATAAAAACACTCTACTTTGGAAGGCATTCTACAGATCGTGAAGTTGCTCTCATGATGCTGATGGCTTATTTGTCATACATGTTGGCTGAGGAAGATTGTGGTGATGCAGCTGTGGAGAGTTTGAATCAGTTCCTTGGTTGGTGCAAGCTCTCATTATTTTTCGTAAGCTGCATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0008150 GO:0008324 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

133

Amino Acids

15.45

Weight (kDa)

9.16

Isoelectric Point (pI)

65.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015742)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496461 RchiOBHm_Chr6g0290591
rosa_laevigata	RLG00000010223 RLG00000024315 RLG00000030193 RLG00000033623 RLG00000033687 RLG00000034505
rosa_roxburghii	Rroxscaffold_2G00106860
rosa_samantha	Rh2AG158200 Rh2BG164700 Rh3AG329100 Rh5DG468000 Rh6AG265500 Rh6BG316400 Rh7CG240900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
AciI	CCGC	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	134
AfeI	AGCGCT	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	45
AflIII	ACRYGT	1 cut(s)	303
AgsI	TTSAA	2 cut(s)	113, 349
AjnI	CCWGG	1 cut(s)	102
AluBI	AGCT	3 cut(s)	335, 373, 393
AluI	AGCT	3 cut(s)	335, 373, 393
Aor51HI	AGCGCT	1 cut(s)	217
ApeKI	GCWGC	2 cut(s)	332, 393
ApoI	RAATTY	1 cut(s)	65
Asp700I	GAANNNNTTC	2 cut(s)	250, 353
AspLEI	GCGC	2 cut(s)	124, 218
AsuHPI	GGTGA	3 cut(s)	48, 199, 338
BarI	GAAGNNNNNNTAC	2 cut(s)	238, 270
BbvCI	CCTCAGC	1 cut(s)	312
BbvI	GCAGC	2 cut(s)	344, 380
BccI	CCATC	1 cut(s)	280
BciT130I	CCWGG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	255
BfoI	RGCGCY	1 cut(s)	219
BglII	AGATCT	1 cut(s)	168
BisI	GCNGC	2 cut(s)	333, 394
BlsI	GCNGC	2 cut(s)	334, 395
Bme1390I	CCNGG	1 cut(s)	104
BmiI	GGNNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	104
BmsI	GCATC	3 cut(s)	133, 270, 319
Bpu10I	CCTNAGC	1 cut(s)	312
BsaJI	CCNNGG	2 cut(s)	183, 358
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	104
BseDI	CCNNGG	2 cut(s)	183, 358
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	303
BseXI	GCAGC	2 cut(s)	344, 380
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmI	GAATGC	1 cut(s)	250
Bsp143I	GATC	3 cut(s)	136, 168, 259
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	304
BspHI	TCATGA	1 cut(s)	276
BspLI	GGNNCC	1 cut(s)	50
BssECI	CCNNGG	2 cut(s)	183, 358
BssMI	GATC	3 cut(s)	136, 168, 259
BssT1I	CCWWGG	2 cut(s)	183, 358
Bst2UI	CCWGG	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	1 cut(s)	312
BstDSI	CCRYGG	1 cut(s)	183
BstH2I	RGCGCY	1 cut(s)	219
BstHHI	GCGC	2 cut(s)	124, 218
BstKTI	GATC	3 cut(s)	139, 171, 262
BstMBI	GATC	3 cut(s)	136, 168, 259
BstNI	CCWGG	1 cut(s)	104
BstNSI	RCATGY	1 cut(s)	307
BstSCI	CCNGG	1 cut(s)	102
BstSFI	CTRYAG	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	344, 380
BstX2I	RGATCY	1 cut(s)	168
BstYI	RGATCY	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	371
CciI	TCATGA	1 cut(s)	276
CfoI	GCGC	2 cut(s)	124, 218
CviAII	CATG	3 cut(s)	184, 277, 304
CviJI	RGCY	8 cut(s)	51, 78, 203, 290, 311, 335, 373, 393
CviKI_1	RGCY	8 cut(s)	51, 78, 203, 290, 311, 335, 373, 393
DdeI	CTNAG	1 cut(s)	312
DpnI	GATC	3 cut(s)	138, 170, 261
DpnII	GATC	3 cut(s)	136, 168, 259
Eco130I	CCWWGG	2 cut(s)	183, 358
Eco47III	AGCGCT	1 cut(s)	217
Eco57I	CTGAAG	1 cut(s)	134
EcoRII	CCWGG	1 cut(s)	102
EcoT14I	CCWWGG	2 cut(s)	183, 358
ErhI	CCWWGG	2 cut(s)	183, 358
FaeI	CATG	3 cut(s)	187, 280, 307
FaiI	YATR	8 cut(s)	72, 185, 212, 222, 227, 278, 301, 305
FatI	CATG	3 cut(s)	183, 276, 303
Fnu4HI	GCNGC	2 cut(s)	333, 394
Fsp4HI	GCNGC	2 cut(s)	333, 394
GlaI	GCGC	2 cut(s)	123, 217
GluI	GCNGC	2 cut(s)	333, 394
HaeII	RGCGCY	1 cut(s)	219
HhaI	GCGC	2 cut(s)	124, 218
Hin1II	CATG	3 cut(s)	187, 280, 307
Hin6I	GCGC	2 cut(s)	122, 216
HinP1I	GCGC	2 cut(s)	122, 216
HinfI	GANTC	1 cut(s)	349
HphI	GGTGA	3 cut(s)	48, 199, 338
Hpy188III	TCNNGA	3 cut(s)	134, 263, 277
HpyAV	CCTTC	3 cut(s)	39, 158, 240
HpyCH4V	TGCA	3 cut(s)	332, 369, 396
HpyF3I	CTNAG	1 cut(s)	312
Hsp92II	CATG	3 cut(s)	187, 280, 307
HspAI	GCGC	2 cut(s)	122, 216
Kzo9I	GATC	3 cut(s)	136, 168, 259
LmnI	GCTCC	1 cut(s)	48
LpnPI	CCDG	5 cut(s)	89, 116, 137, 147, 189
Lsp1109I	GCAGC	2 cut(s)	344, 380
LweI	GCATC	3 cut(s)	133, 270, 319
MalI	GATC	3 cut(s)	138, 170, 261
MboI	GATC	3 cut(s)	136, 168, 259
MboII	GAAGA	4 cut(s)	96, 99, 202, 329
MflI	RGATCY	1 cut(s)	168
MluCI	AATT	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	4 cut(s)	112, 141, 150, 307
MroXI	GAANNNNTTC	2 cut(s)	250, 353
MseI	TTAA	2 cut(s)	161, 400
MspA1I	CMGCKG	1 cut(s)	335
MspR9I	CCNGG	1 cut(s)	104
Mva1269I	GAATGC	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	3 cut(s)	136, 168, 259
NlaIII	CATG	3 cut(s)	187, 280, 307
NlaIV	GGNNCC	1 cut(s)	50
NspI	RCATGY	1 cut(s)	307
PagI	TCATGA	1 cut(s)	276
PciI	ACATGT	1 cut(s)	303
PctI	GAATGC	1 cut(s)	250
PdmI	GAANNNNTTC	2 cut(s)	250, 353
PfeI	GAWTC	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	334, 395
PscI	ACATGT	1 cut(s)	303
PsiI	TTATAA	1 cut(s)	212
Psp6I	CCWGG	1 cut(s)	102
PspGI	CCWGG	1 cut(s)	102
PspN4I	GGNNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	335
SaqAI	TTAA	2 cut(s)	161, 400
SatI	GCNGC	2 cut(s)	333, 394
Sau3AI	GATC	3 cut(s)	136, 168, 259
ScrFI	CCNGG	1 cut(s)	104
SetI	ASST	6 cut(s)	133, 150, 161, 337, 375, 395
SfaNI	GCATC	3 cut(s)	133, 270, 319
SfcI	CTRYAG	1 cut(s)	255
Sse9I	AATT	1 cut(s)	65
SsiI	CCGC	1 cut(s)	59
StyD4I	CCNGG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	183, 358
TasI	AATT	1 cut(s)	65
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	161, 400
Tru9I	TTAA	2 cut(s)	161, 400
TseI	GCWGC	2 cut(s)	332, 393
XapI	RAATTY	1 cut(s)	65
XceI	RCATGY	1 cut(s)	307
XmnI	GAANNNNTTC	2 cut(s)	250, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.