Rh2AG158200

Sodium hydrogen exchanger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0015742
Physical Location & Seq
Forward (+)
14894151 .. 14900919
6769 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG158200.1

Sequence Viewer

Length: 321 bp
ATGAATCTGATGAGTTCAGATTACCAACTGACCAGGAACTTGAACAAGAGGCGCATCAACCTCCTGATCTTTCACACCTTCAGGGGAGTCTGCTATTTTACCATGGTGAAGATTATCAAGGCTGGTCTTATAAGCGCTTATATCATAAAAACACTCTACTTTGGAAGGCATTCTACAGATCGTGAAGTTGCTCTCATGATGCTGATGGCTTATTTGTCATACATGTTGGCTGAGGAAGATTGTGGTGATGCAGCTGTGGAGAGTTTGAATCAGTTCCTTGGTTGGTGCAAGCTCTCATTATTTTTCGTAAGCTGCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

106

Amino Acids

12.28

Weight (kDa)

8.75

Isoelectric Point (pI)

39.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
AcuI CTGAAG 1 cut(s) 64
AfeI AGCGCT 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 2 cut(s) 43, 268
AjnI CCWGG 1 cut(s) 32
AluBI AGCT 3 cut(s) 254, 292, 312
AluI AGCT 3 cut(s) 254, 292, 312
Aor51HI AGCGCT 1 cut(s) 136
ApeKI GCWGC 2 cut(s) 251, 312
Asp700I GAANNNNTTC 2 cut(s) 169, 272
AspLEI GCGC 2 cut(s) 54, 137
AsuHPI GGTGA 2 cut(s) 118, 257
BarI GAAGNNNNNNTAC 2 cut(s) 157, 189
BbvCI CCTCAGC 1 cut(s) 231
BbvI GCAGC 2 cut(s) 263, 299
BccI CCATC 1 cut(s) 199
BciT130I CCWGG 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 138
BisI GCNGC 2 cut(s) 252, 313
BlsI GCNGC 2 cut(s) 253, 314
Bme1390I CCNGG 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 3 cut(s) 63, 189, 238
Bpu10I CCTNAGC 1 cut(s) 231
BsaJI CCNNGG 2 cut(s) 102, 277
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 102, 277
BseMII CTCAG 1 cut(s) 222
BseXI GCAGC 2 cut(s) 263, 299
BsmI GAATGC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 66, 178
Bsp19I CCATGG 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 195
BssECI CCNNGG 2 cut(s) 102, 277
BssMI GATC 2 cut(s) 66, 178
BssT1I CCWWGG 2 cut(s) 102, 277
Bst2UI CCWGG 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 290
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 54, 137
BstKTI GATC 2 cut(s) 69, 181
BstMBI GATC 2 cut(s) 66, 178
BstNI CCWGG 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 174
BstV1I GCAGC 2 cut(s) 263, 299
BtgI CCRYGG 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 290
CciI TCATGA 1 cut(s) 195
CfoI GCGC 2 cut(s) 54, 137
CviAII CATG 3 cut(s) 103, 196, 223
CviJI RGCY 6 cut(s) 122, 209, 230, 254, 292, 312
CviKI_1 RGCY 6 cut(s) 122, 209, 230, 254, 292, 312
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 68, 180
DpnII GATC 2 cut(s) 66, 178
Eco130I CCWWGG 2 cut(s) 102, 277
Eco47III AGCGCT 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 32
EcoT14I CCWWGG 2 cut(s) 102, 277
ErhI CCWWGG 2 cut(s) 102, 277
FaeI CATG 3 cut(s) 106, 199, 226
FaiI YATR 7 cut(s) 104, 131, 141, 146, 197, 220, 224
FatI CATG 3 cut(s) 102, 195, 222
Fnu4HI GCNGC 2 cut(s) 252, 313
Fsp4HI GCNGC 2 cut(s) 252, 313
GlaI GCGC 2 cut(s) 53, 136
GluI GCNGC 2 cut(s) 252, 313
HaeII RGCGCY 1 cut(s) 138
HhaI GCGC 2 cut(s) 54, 137
Hin1II CATG 3 cut(s) 106, 199, 226
Hin6I GCGC 2 cut(s) 52, 135
HinP1I GCGC 2 cut(s) 52, 135
HinfI GANTC 3 cut(s) 4, 87, 268
HphI GGTGA 2 cut(s) 118, 257
Hpy188I TCNGA 2 cut(s) 9, 19
Hpy188III TCNNGA 3 cut(s) 64, 182, 196
HpyAV CCTTC 2 cut(s) 88, 159
HpyCH4V TGCA 3 cut(s) 251, 288, 315
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 3 cut(s) 106, 199, 226
HspAI GCGC 2 cut(s) 52, 135
Kzo9I GATC 2 cut(s) 66, 178
LpnPI CCDG 5 cut(s) 19, 46, 67, 77, 108
Lsp1109I GCAGC 2 cut(s) 263, 299
LweI GCATC 3 cut(s) 63, 189, 238
MalI GATC 2 cut(s) 68, 180
MboI GATC 2 cut(s) 66, 178
MboII GAAGA 2 cut(s) 121, 248
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 3 cut(s) 42, 71, 226
MroXI GAANNNNTTC 2 cut(s) 169, 272
MseI TTAA 1 cut(s) 319
MspA1I CMGCKG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 34
NcoI CCATGG 1 cut(s) 102
NdeII GATC 2 cut(s) 66, 178
NlaIII CATG 3 cut(s) 106, 199, 226
NspI RCATGY 1 cut(s) 226
PagI TCATGA 1 cut(s) 195
PciI ACATGT 1 cut(s) 222
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 2 cut(s) 169, 272
PfeI GAWTC 2 cut(s) 4, 268
PkrI GCNGC 2 cut(s) 253, 314
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 222
PsiI TTATAA 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PvuII CAGCTG 1 cut(s) 254
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 2 cut(s) 252, 313
Sau3AI GATC 2 cut(s) 66, 178
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 34
SetI ASST 5 cut(s) 63, 80, 256, 294, 314
SfaNI GCATC 3 cut(s) 63, 189, 238
SfcI CTRYAG 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 2 cut(s) 102, 277
TfiI GAWTC 2 cut(s) 4, 268
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TseI GCWGC 2 cut(s) 251, 312
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 226
XmnI GAANNNNTTC 2 cut(s) 169, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.