Rh6BG316400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015742
Physical Location & Seq
Reverse (-)
54630963 .. 54631301
339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG316400.1

Sequence Viewer

Length: 339 bp
ATGTCCCCAATTGAATCTTTGTTAGAGTTGGATCTCGAGATACTTCGCATCTGTGGTAACCTCCCCATTATTTCTGATTTTCATGTTGCCATTATTGGCAATTGTCTCCCCTCTCCTCTCTCATGCTCATCGATTGTGTTGATCTTTGATTGTAATTTGGTACTACACGAATTTATGTGGATTTCGTACCGTATTGATTCGTTTTTCTTTTTGGGCTCAAGAACTAATTTTGATTTGCTTTTCTTTCTGGGTATTCAAGATTTCATAAGAGAAGGAACTTCCCCAAATGGGTATCTCATATGCGCCCCAGAAATGGTTTCAGCTCAAATCCTCAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.63

Weight (kDa)

4.41

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 39
AcsI RAATTY 1 cut(s) 170
AfaI GTAC 2 cut(s) 162, 188
AfiI CCNNNNNNNGG 2 cut(s) 288, 313
AgsI TTSAA 2 cut(s) 14, 257
AluBI AGCT 1 cut(s) 323
AluI AGCT 1 cut(s) 323
Alw26I GTCTC 1 cut(s) 110
AlwI GGATC 1 cut(s) 39
Ama87I CYCGRG 1 cut(s) 35
ApoI RAATTY 1 cut(s) 170
AspLEI GCGC 1 cut(s) 305
AvaI CYCGRG 1 cut(s) 35
BanII GRGCYC 1 cut(s) 218
BcoDI GTCTC 1 cut(s) 110
BmeT110I CYCGRG 1 cut(s) 35
BmsI GCATC 1 cut(s) 57
BpuEI CTTGAG 1 cut(s) 202
Bsa29I ATCGAT 1 cut(s) 131
Bsc4I CCNNNNNNNGG 2 cut(s) 288, 313
BseCI ATCGAT 1 cut(s) 131
BseLI CCNNNNNNNGG 2 cut(s) 288, 313
BseRI GAGGAG 1 cut(s) 105
BshVI ATCGAT 1 cut(s) 131
BsiHKCI CYCGRG 1 cut(s) 35
BslI CCNNNNNNNGG 2 cut(s) 288, 313
BsmAI GTCTC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 2 cut(s) 31, 141
BspDI ATCGAT 1 cut(s) 131
BspPI GGATC 1 cut(s) 39
BssMI GATC 2 cut(s) 31, 141
Bst4CI ACNGT 1 cut(s) 191
BstEII GGTNACC 1 cut(s) 56
BstHHI GCGC 1 cut(s) 305
BstKTI GATC 2 cut(s) 34, 144
BstMAI GTCTC 1 cut(s) 110
BstMBI GATC 2 cut(s) 31, 141
BstPI GGTNACC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 31
BstYI RGATCY 1 cut(s) 31
Bsu15I ATCGAT 1 cut(s) 131
BsuTUI ATCGAT 1 cut(s) 131
CfoI GCGC 1 cut(s) 305
ClaI ATCGAT 1 cut(s) 131
Csp6I GTAC 2 cut(s) 161, 187
CviAII CATG 2 cut(s) 83, 123
CviJI RGCY 2 cut(s) 216, 323
CviKI_1 RGCY 2 cut(s) 216, 323
CviQI GTAC 2 cut(s) 161, 187
DpnI GATC 2 cut(s) 33, 143
DpnII GATC 2 cut(s) 31, 141
Eco24I GRGCYC 1 cut(s) 218
Eco88I CYCGRG 1 cut(s) 35
Eco91I GGTNACC 1 cut(s) 56
EcoO65I GGTNACC 1 cut(s) 56
EcoT38I GRGCYC 1 cut(s) 218
FaeI CATG 2 cut(s) 86, 126
FaiI YATR 6 cut(s) 84, 124, 176, 266, 299, 301
FatI CATG 2 cut(s) 82, 122
FauNDI CATATG 1 cut(s) 299
FriOI GRGCYC 1 cut(s) 218
GlaI GCGC 1 cut(s) 304
HhaI GCGC 1 cut(s) 305
Hin1II CATG 2 cut(s) 86, 126
Hin6I GCGC 1 cut(s) 303
HinP1I GCGC 1 cut(s) 303
HinfI GANTC 2 cut(s) 14, 197
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 4 cut(s) 35, 37, 219, 257
HpyAV CCTTC 1 cut(s) 266
HpyCH4III ACNGT 1 cut(s) 191
Hsp92II CATG 2 cut(s) 86, 126
HspAI GCGC 1 cut(s) 303
Kzo9I GATC 2 cut(s) 31, 141
LpnPI CCDG 2 cut(s) 233, 321
LweI GCATC 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 56
MalI GATC 2 cut(s) 33, 143
MboI GATC 2 cut(s) 31, 141
MfeI CAATTG 2 cut(s) 9, 100
MflI RGATCY 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 218
MluCI AATT 5 cut(s) 9, 100, 154, 170, 226
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 3 cut(s) 71, 121, 126
MunI CAATTG 2 cut(s) 9, 100
NdeI CATATG 1 cut(s) 299
NdeII GATC 2 cut(s) 31, 141
NlaIII CATG 2 cut(s) 86, 126
PaeR7I CTCGAG 1 cut(s) 35
PfeI GAWTC 2 cut(s) 14, 197
PspEI GGTNACC 1 cut(s) 56
PsuI RGATCY 1 cut(s) 31
RsaI GTAC 2 cut(s) 162, 188
RsaNI GTAC 2 cut(s) 161, 187
Sau3AI GATC 2 cut(s) 31, 141
SduI GDGCHC 1 cut(s) 218
SetI ASST 2 cut(s) 63, 325
SfaNI GCATC 1 cut(s) 57
Sfr274I CTCGAG 1 cut(s) 35
SgeI CNNG 9 cut(s) 47, 49, 95, 135, 179, 231, 260, 269, 320
SlaI CTCGAG 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 35, 217
SmoI CTYRAG 2 cut(s) 35, 217
Sse9I AATT 5 cut(s) 9, 100, 154, 170, 226
TaaI ACNGT 1 cut(s) 191
TaqI TCGA 2 cut(s) 36, 131
TasI AATT 5 cut(s) 9, 100, 154, 170, 226
TfiI GAWTC 2 cut(s) 14, 197
TspDTI ATGAA 2 cut(s) 71, 253
XapI RAATTY 1 cut(s) 170
XhoI CTCGAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.