Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0015742

Physical Location & Seq

Genomic Coordinates Forward (+)

46934084 .. 46936640

Gene Structure 2557 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG329100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGAGAGTTACCGGACGGGATGTTCCTCTCCGGGAAGTTTGGGTTTCTGTTAGATCTGGAGTAGGACTCGGTTCACACATCTCTATTCACCGTAGCTCTGCCTCTCTCTCTATACATGCCGACGTCCATTCTACGTTATCTGTAGCAGCGCTCCGACATCATTTTCAGATATGTGGCAGGGCTCTCTCTATTAGAGTTGGGTCTCGAGATACTTCGTATTGTGTTCAGATCTATGGGTTTGTGATTATACAGTTTCTATGCCGTCGAAACCCATCCCATCTTGAACTATTCCCGATTGAGCAGTCCGACGAAGCAAAAGAAGGAGCCTTTCACCGCCAAAATTCCAAAGAAGCCCAAGAAGAAGGTAGAGAGGAACTGGAATTAAATATCAAGGATGAATCTTCTGAGTTCAGATTACCAACTGACCAGGAACTTGAACAAGAGGCGCATCAACCTCCTGATCTTTCACACCTTCAGGGGAGGTTAAAAGAGAGTAAGTTGTACCTCCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000154 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008284 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009966 GO:0009987 GO:0010467 GO:0010646 GO:0016043 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042127 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0065003 GO:0065007 GO:0070013 GO:0070475 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F Methyltr_RsmF_N

Protein Analysis

170

Amino Acids

19.33

Weight (kDa)

6.25

Isoelectric Point (pI)

51.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015742)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496461 RchiOBHm_Chr6g0290591
rosa_laevigata	RLG00000010223 RLG00000024315 RLG00000030193 RLG00000033623 RLG00000033687 RLG00000034505
rosa_roxburghii	Rroxscaffold_2G00106860
rosa_samantha	Rh2AG158200 Rh2BG164700 Rh3AG329100 Rh5DG468000 Rh6AG265500 Rh6BG316400 Rh7CG240900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	126
AciI	CCGC	1 cut(s)	334
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	503
AfeI	AGCGCT	1 cut(s)	150
AgsI	TTSAA	2 cut(s)	284, 437
AjnI	CCWGG	1 cut(s)	426
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw26I	GTCTC	1 cut(s)	207
Ama87I	CYCGRG	1 cut(s)	204
Aor51HI	AGCGCT	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	340
AspLEI	GCGC	2 cut(s)	151, 448
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	2 cut(s)	80, 323
AvaI	CYCGRG	1 cut(s)	204
BanII	GRGCYC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	280, 285
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	428
BcnI	CCSGG	1 cut(s)	32
BcoDI	GTCTC	1 cut(s)	207
BfaI	CTAG	1 cut(s)	511
BfmI	CTRYAG	1 cut(s)	141
BfoI	RGCGCY	1 cut(s)	152
BglII	AGATCT	2 cut(s)	53, 228
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	32, 428
BmeT110I	CYCGRG	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	325
BmrFI	CCNGG	2 cut(s)	32, 428
BmsI	GCATC	1 cut(s)	457
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpmI	CTGGAG	1 cut(s)	78
BpuMI	CCSGG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	123
BsaI	GGTCTC	1 cut(s)	207
BsaWI	WCCGGW	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	381
BseBI	CCWGG	1 cut(s)	428
BseGI	GGATG	3 cut(s)	25, 272, 400
BseMII	CTCAG	1 cut(s)	396
BseNI	ACTGG	1 cut(s)	381
BseXI	GCAGC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	12, 31
BsmAI	GTCTC	1 cut(s)	207
Bso31I	GGTCTC	1 cut(s)	207
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	53, 228, 460
BspACI	CCGC	1 cut(s)	334
BspCNI	CTCAG	1 cut(s)	397
BspLI	GGNNCC	1 cut(s)	325
BspTNI	GGTCTC	1 cut(s)	207
BsrI	ACTGG	1 cut(s)	381
BssMI	GATC	3 cut(s)	53, 228, 460
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	92, 252
BstACI	GRCGYC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	405
BstF5I	GGATG	3 cut(s)	25, 272, 400
BstH2I	RGCGCY	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	151, 448
BstKTI	GATC	3 cut(s)	56, 231, 463
BstMAI	GTCTC	1 cut(s)	207
BstMBI	GATC	3 cut(s)	53, 228, 460
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	30, 426
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	53, 228
BstYI	RGATCY	2 cut(s)	53, 228
BtsCI	GGATG	3 cut(s)	25, 272, 400
CfoI	GCGC	2 cut(s)	151, 448
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	1 cut(s)	116
CviJI	RGCY	4 cut(s)	96, 182, 326, 353
CviKI_1	RGCY	4 cut(s)	96, 182, 326, 353
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	1 cut(s)	405
DpnI	GATC	3 cut(s)	55, 230, 462
DpnII	GATC	3 cut(s)	53, 228, 460
Eco24I	GRGCYC	1 cut(s)	184
Eco31I	GGTCTC	1 cut(s)	207
Eco47III	AGCGCT	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	458
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	1 cut(s)	119
FaiI	YATR	6 cut(s)	113, 117, 172, 234, 248, 259
FatI	CATG	1 cut(s)	115
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	3 cut(s)	32, 259, 407
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	511
GlaI	GCGC	2 cut(s)	150, 447
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	78
HaeII	RGCGCY	1 cut(s)	152
HapII	CCGG	2 cut(s)	12, 31
HhaI	GCGC	2 cut(s)	151, 448
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	1 cut(s)	119
Hin6I	GCGC	2 cut(s)	149, 446
HinP1I	GCGC	2 cut(s)	149, 446
HinfI	GANTC	2 cut(s)	66, 398
HpaII	CCGG	2 cut(s)	12, 31
HphI	GGTGA	2 cut(s)	80, 323
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	6 cut(s)	155, 168, 228, 307, 406, 413
Hpy188III	TCNNGA	6 cut(s)	57, 204, 206, 281, 292, 458
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	3 cut(s)	125, 267, 311
HpyAV	CCTTC	3 cut(s)	314, 356, 482
HpyCH4III	ACNGT	2 cut(s)	92, 252
HpyCH4IV	ACGT	2 cut(s)	123, 134
HpyF3I	CTNAG	1 cut(s)	405
HpySE526I	ACGT	2 cut(s)	123, 134
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	1 cut(s)	119
HspAI	GCGC	2 cut(s)	149, 446
Kzo9I	GATC	3 cut(s)	53, 228, 460
LmnI	GCTCC	2 cut(s)	156, 323
LpnPI	CCDG	9 cut(s)	25, 42, 44, 163, 362, 413, 440, 461, 471
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	1 cut(s)	511
MaeII	ACGT	2 cut(s)	123, 134
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	3 cut(s)	55, 230, 462
MboI	GATC	3 cut(s)	53, 228, 460
MboII	GAAGA	2 cut(s)	371, 393
MflI	RGATCY	2 cut(s)	53, 228
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	2 cut(s)	340, 380
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	178, 330
MnlI	CCTC	6 cut(s)	36, 112, 364, 436, 465, 474
MseI	TTAA	2 cut(s)	383, 485
MspI	CCGG	2 cut(s)	12, 31
MspR9I	CCNGG	2 cut(s)	32, 428
MvaI	CCWGG	1 cut(s)	428
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	3 cut(s)	53, 228, 460
NlaIII	CATG	1 cut(s)	119
NlaIV	GGNNCC	1 cut(s)	325
NspI	RCATGY	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	204
PfeI	GAWTC	1 cut(s)	398
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	325
PsuI	RGATCY	2 cut(s)	53, 228
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
SaqAI	TTAA	2 cut(s)	383, 485
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	3 cut(s)	53, 228, 460
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	32, 428
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	8 cut(s)	98, 126, 137, 367, 457, 474, 485, 507
SfaNI	GCATC	1 cut(s)	457
SfcI	CTRYAG	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	2 cut(s)	340, 380
SsiI	CCGC	1 cut(s)	334
SspMI	CTAG	1 cut(s)	511
StyD4I	CCNGG	2 cut(s)	30, 426
TaaI	ACNGT	2 cut(s)	92, 252
TaiI	ACGT	2 cut(s)	126, 137
TaqI	TCGA	2 cut(s)	205, 265
TasI	AATT	2 cut(s)	340, 380
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	2 cut(s)	383, 485
Tru9I	TTAA	2 cut(s)	383, 485
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	411
XapI	RAATTY	1 cut(s)	340
XceI	RCATGY	1 cut(s)	119
XhoI	CTCGAG	1 cut(s)	204
XspI	CTAG	1 cut(s)	511
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.