Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0015742

Physical Location & Seq

Genomic Coordinates Forward (+)

64395936 .. 64398144

Gene Structure 2209 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010223

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGAGAGTTACCGGACGGGATGTTCCTCTCCGGGAAGTTTGGGTTTCTGTTAGATCTGGAGTAGGACTCGGTTCACACATCTCTATTCACCGTAGCTCTGCCTCTCTCTCTATACATGCCGACGTCCATTCTGCGTTATCTGTAGCAGCGCTCCGACATCATTTTCAGATATGTGGCAGGGCTCTCTCTATTAGAGTTGGATCTCGAGATACTTCATATTGTGTTCAGATCTATGGGTTTGTGATTATACAGTTTCTATGCCGTCGAAACCCATCCCATCTTGAACTATTCCCGATTGAGCAGTCCGCCCAAGAAGAAGGTAGAGAGGAACTGGAATTAAATATCAAGGATGAATCTGATGAGTTCAGATTACCAACTGACCAGGAACTTGAACAAGAGGCGCATCAACCTCCTGATCTTTCACACCTTCAGGGGAGGTTAAAAGAGAGCTGGTCTTATAAGCGCTTATATCATAAAAACACTCTACTTTGGAAGGCATCTACAGATCGTGAAGTTGCTCTCATGATGCTTATGGCTTATTTGTCATACATGTTGGCTGAGGTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000027 GO:0000154 GO:0000470 GO:0001510 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006139 GO:0006364 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008168 GO:0008169 GO:0008173 GO:0008284 GO:0008649 GO:0008757 GO:0009383 GO:0009451 GO:0009966 GO:0009987 GO:0010467 GO:0010646 GO:0016043 GO:0016070 GO:0016072 GO:0016434 GO:0016740 GO:0016741 GO:0022607 GO:0022613 GO:0022618 GO:0023051 GO:0031167 GO:0031974 GO:0031981 GO:0032259 GO:0034470 GO:0034622 GO:0034641 GO:0034660 GO:0042127 GO:0042254 GO:0042255 GO:0042273 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043414 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0048583 GO:0050789 GO:0050794 GO:0065003 GO:0065007 GO:0070013 GO:0070475 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0140098 GO:0140102 GO:1901360 GO:1901796 GO:1902531

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Methyltr_RsmB-F Methyltr_RsmF_N

Protein Analysis

190

Amino Acids

21.65

Weight (kDa)

6.36

Isoelectric Point (pI)

52.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015742)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496461 RchiOBHm_Chr6g0290591
rosa_laevigata	RLG00000010223 RLG00000024315 RLG00000030193 RLG00000033623 RLG00000033687 RLG00000034505
rosa_roxburghii	Rroxscaffold_2G00106860
rosa_samantha	Rh2AG158200 Rh2BG164700 Rh3AG329100 Rh5DG468000 Rh6AG265500 Rh6BG316400 Rh7CG240900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AatII	GACGTC	1 cut(s)	126
Acc65I	GGTACC	1 cut(s)	562
AccB1I	GGYRCC	1 cut(s)	562
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	564
AfeI	AGCGCT	2 cut(s)	150, 464
AflIII	ACRYGT	1 cut(s)	549
AgsI	TTSAA	2 cut(s)	284, 392
AjnI	CCWGG	1 cut(s)	381
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	2 cut(s)	96, 450
AluI	AGCT	2 cut(s)	96, 450
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	204
Aor51HI	AGCGCT	2 cut(s)	150, 464
ApeKI	GCWGC	1 cut(s)	146
Asp718I	GGTACC	1 cut(s)	562
AspLEI	GCGC	3 cut(s)	151, 403, 465
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	562
BanII	GRGCYC	1 cut(s)	184
BbvCI	CCTCAGC	1 cut(s)	558
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	280, 285
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	383
BcnI	CCSGG	1 cut(s)	32
BfmI	CTRYAG	2 cut(s)	141, 501
BfoI	RGCGCY	2 cut(s)	152, 466
BglII	AGATCT	2 cut(s)	53, 228
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	32, 383
BmeT110I	CYCGRG	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	564
BmrFI	CCNGG	2 cut(s)	32, 383
BmsI	GCATC	3 cut(s)	412, 506, 516
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	558
BpuMI	CCSGG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	11
Bse1I	ACTGG	1 cut(s)	336
BseBI	CCWGG	1 cut(s)	383
BseGI	GGATG	3 cut(s)	25, 272, 355
BseMII	CTCAG	1 cut(s)	549
BseNI	ACTGG	1 cut(s)	336
BseXI	GCAGC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	562
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	12, 31
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	5 cut(s)	53, 200, 228, 415, 505
BspACI	CCGC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	550
BspHI	TCATGA	1 cut(s)	522
BspLI	GGNNCC	1 cut(s)	564
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	562
BsrI	ACTGG	1 cut(s)	336
BssMI	GATC	5 cut(s)	53, 200, 228, 415, 505
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	92, 252
BstACI	GRCGYC	1 cut(s)	123
BstDEI	CTNAG	1 cut(s)	558
BstF5I	GGATG	3 cut(s)	25, 272, 355
BstH2I	RGCGCY	2 cut(s)	152, 466
BstHHI	GCGC	3 cut(s)	151, 403, 465
BstKTI	GATC	5 cut(s)	56, 203, 231, 418, 508
BstMBI	GATC	5 cut(s)	53, 200, 228, 415, 505
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	2 cut(s)	119, 553
BstSCI	CCNGG	2 cut(s)	30, 381
BstSFI	CTRYAG	2 cut(s)	141, 501
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	3 cut(s)	53, 200, 228
BstYI	RGATCY	3 cut(s)	53, 200, 228
BtsCI	GGATG	3 cut(s)	25, 272, 355
CciI	TCATGA	1 cut(s)	522
CfoI	GCGC	3 cut(s)	151, 403, 465
Csp6I	GTAC	1 cut(s)	563
CviAII	CATG	3 cut(s)	116, 523, 550
CviJI	RGCY	5 cut(s)	96, 182, 450, 536, 557
CviKI_1	RGCY	5 cut(s)	96, 182, 450, 536, 557
CviQI	GTAC	1 cut(s)	563
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	5 cut(s)	55, 202, 230, 417, 507
DpnII	GATC	5 cut(s)	53, 200, 228, 415, 505
EciI	GGCGGA	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	184
Eco47III	AGCGCT	2 cut(s)	150, 464
Eco57I	CTGAAG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	3 cut(s)	119, 526, 553
FatI	CATG	3 cut(s)	115, 522, 549
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	3 cut(s)	32, 259, 362
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	147
GlaI	GCGC	3 cut(s)	150, 402, 464
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	78
HaeII	RGCGCY	2 cut(s)	152, 466
HapII	CCGG	2 cut(s)	12, 31
HhaI	GCGC	3 cut(s)	151, 403, 465
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	119, 526, 553
Hin6I	GCGC	3 cut(s)	149, 401, 463
HinP1I	GCGC	3 cut(s)	149, 401, 463
HinfI	GANTC	2 cut(s)	66, 353
HpaII	CCGG	2 cut(s)	12, 31
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	5 cut(s)	155, 168, 228, 358, 368
Hpy188III	TCNNGA	8 cut(s)	57, 204, 206, 281, 292, 413, 509, 523
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	2 cut(s)	125, 267
HpyAV	CCTTC	3 cut(s)	311, 437, 487
HpyCH4III	ACNGT	2 cut(s)	92, 252
HpyCH4IV	ACGT	1 cut(s)	123
HpyF3I	CTNAG	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	119, 526, 553
HspAI	GCGC	3 cut(s)	149, 401, 463
KpnI	GGTACC	1 cut(s)	566
Kzo9I	GATC	5 cut(s)	53, 200, 228, 415, 505
LmnI	GCTCC	1 cut(s)	156
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	3 cut(s)	412, 506, 516
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	5 cut(s)	55, 202, 230, 417, 507
MboI	GATC	5 cut(s)	53, 200, 228, 415, 505
MboII	GAAGA	1 cut(s)	326
MflI	RGATCY	3 cut(s)	53, 200, 228
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	178, 178
MnlI	CCTC	7 cut(s)	36, 112, 319, 391, 420, 429, 553
MseI	TTAA	2 cut(s)	338, 440
MspI	CCGG	2 cut(s)	12, 31
MspR9I	CCNGG	2 cut(s)	32, 383
MvaI	CCWGG	1 cut(s)	383
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	5 cut(s)	53, 200, 228, 415, 505
NlaIII	CATG	3 cut(s)	119, 526, 553
NlaIV	GGNNCC	1 cut(s)	564
NspI	RCATGY	2 cut(s)	119, 553
PaeR7I	CTCGAG	1 cut(s)	204
PagI	TCATGA	1 cut(s)	522
PciI	ACATGT	1 cut(s)	549
PfeI	GAWTC	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PscI	ACATGT	1 cut(s)	549
PsiI	TTATAA	1 cut(s)	459
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	564
PsuI	RGATCY	3 cut(s)	53, 200, 228
RsaI	GTAC	1 cut(s)	564
RsaNI	GTAC	1 cut(s)	563
SaqAI	TTAA	2 cut(s)	338, 440
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	5 cut(s)	53, 200, 228, 415, 505
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	32, 383
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	8 cut(s)	98, 126, 322, 412, 429, 440, 452, 564
SfaNI	GCATC	3 cut(s)	412, 506, 516
SfcI	CTRYAG	2 cut(s)	141, 501
Sfr274I	CTCGAG	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	1 cut(s)	335
SsiI	CCGC	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	30, 381
TaaI	ACNGT	2 cut(s)	92, 252
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	205, 265
TasI	AATT	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	2 cut(s)	338, 440
Tru9I	TTAA	2 cut(s)	338, 440
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	204, 366
XceI	RCATGY	2 cut(s)	119, 553
XhoI	CTCGAG	1 cut(s)	204
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.