Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0015742

Physical Location & Seq

Genomic Coordinates Forward (+)

34406163 .. 34408363

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024315

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGAGAGTTACCGGACGGGATGTTCCTCTCCGGGAAGTTTGGGTTTCTGTTAGATCTGGAGTAGGACTCGGTTCACACATCTCTATTCACCGTAGCTCTGCCTCTCTCTCTATACATGCCGACGTCCATTCTGCGTTATCTGTAGCAGCGCTCCGACATCATTTTCAGATATGTGGCAGGGCTCTCTCTATTAGAGTTGGATCTCGAGATACTTCATATTGTGTTCAGATCTATGGGTTTGTGATTATACAGTTTCTATGCCGTCGAAACCCATCCCATCTTGAACTATTCCCGATTGAGCAGTCCGATTACCAACTGACCAGGAACTTGAACAAGAGGCGCATCAACCTCCTGATCTTTCACACCTTCAGGGGAGCACAGTTATCCTTTGGATTATGGGACACTGCAGGCTGGTCTTATAAGCGCTTATATCATAAAAACAGTCTACTTTGGAAGGCATCTACAGATCGTGAAGTTGCTCTCATGATGCTTATGGCTTATTTGTCATACATGTTGGCTGAGGTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0032501 GO:0032502 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099402 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

177

Amino Acids

20.16

Weight (kDa)

10.08

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015742)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496461 RchiOBHm_Chr6g0290591
rosa_laevigata	RLG00000010223 RLG00000024315 RLG00000030193 RLG00000033623 RLG00000033687 RLG00000034505
rosa_roxburghii	Rroxscaffold_2G00106860
rosa_samantha	Rh2AG158200 Rh2BG164700 Rh3AG329100 Rh5DG468000 Rh6AG265500 Rh6BG316400 Rh7CG240900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AatII	GACGTC	1 cut(s)	126
Acc65I	GGTACC	1 cut(s)	523
AccB1I	GGYRCC	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	445
AclWI	GGATC	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	352
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	525
AfeI	AGCGCT	2 cut(s)	150, 425
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	2 cut(s)	284, 331
AjnI	CCWGG	1 cut(s)	320
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
Alw21I	GWGCWC	1 cut(s)	379
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	204
Aor51HI	AGCGCT	2 cut(s)	150, 425
ApeKI	GCWGC	1 cut(s)	146
Asp718I	GGTACC	1 cut(s)	523
AspLEI	GCGC	3 cut(s)	151, 342, 426
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	523
BanII	GRGCYC	1 cut(s)	184
Bbv12I	GWGCWC	1 cut(s)	379
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	280, 285
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	322
BcnI	CCSGG	1 cut(s)	32
BfmI	CTRYAG	3 cut(s)	141, 405, 462
BfoI	RGCGCY	2 cut(s)	152, 427
BglII	AGATCT	2 cut(s)	53, 228
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	32, 322
BmeT110I	CYCGRG	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	525
BmrFI	CCNGG	2 cut(s)	32, 322
BmsI	GCATC	3 cut(s)	351, 467, 477
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
BpmI	CTGGAG	1 cut(s)	78
Bpu10I	CCTNAGC	1 cut(s)	519
BpuMI	CCSGG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	322
BseGI	GGATG	2 cut(s)	25, 272
BseMII	CTCAG	1 cut(s)	510
BseXI	GCAGC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	523
BsiHKAI	GWGCWC	1 cut(s)	379
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	12, 31
BslFI	GGGAC	1 cut(s)	413
BsmFI	GGGAC	1 cut(s)	413
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	2 cut(s)	184, 379
Bsp143I	GATC	5 cut(s)	53, 200, 228, 354, 466
BspCNI	CTCAG	1 cut(s)	511
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	525
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	523
BssMI	GATC	5 cut(s)	53, 200, 228, 354, 466
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	322
Bst4CI	ACNGT	4 cut(s)	92, 252, 381, 443
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	409
BstDEI	CTNAG	1 cut(s)	519
BstF5I	GGATG	2 cut(s)	25, 272
BstH2I	RGCGCY	2 cut(s)	152, 427
BstHHI	GCGC	3 cut(s)	151, 342, 426
BstKTI	GATC	5 cut(s)	56, 203, 231, 357, 469
BstMBI	GATC	5 cut(s)	53, 200, 228, 354, 466
BstNI	CCWGG	1 cut(s)	322
BstNSI	RCATGY	2 cut(s)	119, 514
BstSCI	CCNGG	2 cut(s)	30, 320
BstSFI	CTRYAG	3 cut(s)	141, 405, 462
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	3 cut(s)	53, 200, 228
BstYI	RGATCY	3 cut(s)	53, 200, 228
BtsCI	GGATG	2 cut(s)	25, 272
BtsI	GCAGTG	1 cut(s)	402
BtsIMutI	CAGTG	1 cut(s)	402
Cac8I	GCNNGC	1 cut(s)	409
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	3 cut(s)	151, 342, 426
Csp6I	GTAC	1 cut(s)	524
CviAII	CATG	3 cut(s)	116, 484, 511
CviJI	RGCY	5 cut(s)	96, 182, 411, 497, 518
CviKI_1	RGCY	5 cut(s)	96, 182, 411, 497, 518
CviQI	GTAC	1 cut(s)	524
DdeI	CTNAG	1 cut(s)	519
DpnI	GATC	5 cut(s)	55, 202, 230, 356, 468
DpnII	GATC	5 cut(s)	53, 200, 228, 354, 466
Eco24I	GRGCYC	1 cut(s)	184
Eco47III	AGCGCT	2 cut(s)	150, 425
Eco57I	CTGAAG	1 cut(s)	352
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	320
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	3 cut(s)	119, 487, 514
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	3 cut(s)	115, 483, 510
FblI	GTMKAC	1 cut(s)	445
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	2 cut(s)	32, 259
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	147
GlaI	GCGC	3 cut(s)	150, 341, 425
GluI	GCNGC	1 cut(s)	147
GsuI	CTGGAG	1 cut(s)	78
HaeII	RGCGCY	2 cut(s)	152, 427
HapII	CCGG	2 cut(s)	12, 31
HhaI	GCGC	3 cut(s)	151, 342, 426
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	3 cut(s)	119, 487, 514
Hin6I	GCGC	3 cut(s)	149, 340, 424
HinP1I	GCGC	3 cut(s)	149, 340, 424
HinfI	GANTC	1 cut(s)	66
HpaII	CCGG	2 cut(s)	12, 31
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	2 cut(s)	74, 446
Hpy188I	TCNGA	4 cut(s)	155, 168, 228, 307
Hpy188III	TCNNGA	8 cut(s)	57, 204, 206, 281, 292, 352, 470, 484
Hpy8I	GTNNAC	2 cut(s)	74, 446
Hpy99I	CGWCG	2 cut(s)	125, 267
HpyAV	CCTTC	2 cut(s)	376, 448
HpyCH4III	ACNGT	4 cut(s)	92, 252, 381, 443
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	407
HpyF3I	CTNAG	1 cut(s)	519
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	3 cut(s)	119, 487, 514
HspAI	GCGC	3 cut(s)	149, 340, 424
KpnI	GGTACC	1 cut(s)	527
Kzo9I	GATC	5 cut(s)	53, 200, 228, 354, 466
LmnI	GCTCC	2 cut(s)	156, 374
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	3 cut(s)	351, 467, 477
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	5 cut(s)	55, 202, 230, 356, 468
MboI	GATC	5 cut(s)	53, 200, 228, 354, 466
MflI	RGATCY	3 cut(s)	53, 200, 228
MhlI	GDGCHC	2 cut(s)	184, 379
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	178, 178
MnlI	CCTC	5 cut(s)	36, 112, 330, 359, 514
MspI	CCGG	2 cut(s)	12, 31
MspR9I	CCNGG	2 cut(s)	32, 322
MvaI	CCWGG	1 cut(s)	322
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	5 cut(s)	53, 200, 228, 354, 466
NlaIII	CATG	3 cut(s)	119, 487, 514
NlaIV	GGNNCC	1 cut(s)	525
NspI	RCATGY	2 cut(s)	119, 514
PaeR7I	CTCGAG	1 cut(s)	204
PagI	TCATGA	1 cut(s)	483
PciI	ACATGT	1 cut(s)	510
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PscI	ACATGT	1 cut(s)	510
PsiI	TTATAA	1 cut(s)	420
Psp6I	CCWGG	1 cut(s)	320
PspGI	CCWGG	1 cut(s)	320
PspN4I	GGNNCC	1 cut(s)	525
PstI	CTGCAG	1 cut(s)	409
PsuI	RGATCY	3 cut(s)	53, 200, 228
RsaI	GTAC	1 cut(s)	525
RsaNI	GTAC	1 cut(s)	524
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	5 cut(s)	53, 200, 228, 354, 466
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	32, 322
SduI	GDGCHC	2 cut(s)	184, 379
SetI	ASST	5 cut(s)	98, 126, 351, 368, 525
SfaNI	GCATC	3 cut(s)	351, 467, 477
SfcI	CTRYAG	3 cut(s)	141, 405, 462
Sfr274I	CTCGAG	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
StyD4I	CCNGG	2 cut(s)	30, 320
TaaI	ACNGT	4 cut(s)	92, 252, 381, 443
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	205, 265
TscAI	CASTG	1 cut(s)	409
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	204
TspRI	CASTG	1 cut(s)	409
XceI	RCATGY	2 cut(s)	119, 514
XhoI	CTCGAG	1 cut(s)	204
XmiI	GTMKAC	1 cut(s)	445
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.