Rh7CG240900

Sodium hydrogen exchanger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0015742
Physical Location & Seq
Reverse (-)
22473037 .. 22474513
1477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG240900.1

Sequence Viewer

Length: 243 bp
ATGAATCTGATGAGTTCAGATTACCAACTGACCAGGAACTTGAACAAGAGGCGCATCAACCTCCTGATCTCTCACACCTTCAGGGGAGTCTGCTATTTTACCATGGTGAAGATTATCAAGGCTGGTCTTATAAGCGCTTATATCATAAAAACACTCTACTTTGGAAGGCATTCTATAGATCGTGAAGTTGCTCTCATGATGCTTATGGCTTATTTGTCATACATGTTGGCTGAGGTACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_H_Exchanger

Protein Analysis

80

Amino Acids

9.35

Weight (kDa)

9.84

Isoelectric Point (pI)

40.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 131
Acc65I GGTACC 1 cut(s) 235
AccB1I GGYRCC 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 64
AfaI GTAC 1 cut(s) 237
AfeI AGCGCT 1 cut(s) 136
AflIII ACRYGT 1 cut(s) 222
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 32
Aor51HI AGCGCT 1 cut(s) 136
Asp700I GAANNNNTTC 1 cut(s) 169
Asp718I GGTACC 1 cut(s) 235
AspLEI GCGC 2 cut(s) 54, 137
AsuHPI GGTGA 1 cut(s) 118
BanI GGYRCC 1 cut(s) 235
BbvCI CCTCAGC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 34
BfmI CTRYAG 1 cut(s) 174
BfoI RGCGCY 1 cut(s) 138
Bme1390I CCNGG 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 237
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 2 cut(s) 63, 189
Bpu10I CCTNAGC 1 cut(s) 231
BsaJI CCNNGG 1 cut(s) 102
BseBI CCWGG 1 cut(s) 34
BseDI CCNNGG 1 cut(s) 102
BseMII CTCAG 1 cut(s) 222
BshNI GGYRCC 1 cut(s) 235
BsmI GAATGC 1 cut(s) 169
Bsp143I GATC 2 cut(s) 66, 178
Bsp19I CCATGG 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 223
BspHI TCATGA 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 237
BspT107I GGYRCC 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 2 cut(s) 66, 178
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 34
BstDEI CTNAG 1 cut(s) 231
BstDSI CCRYGG 1 cut(s) 102
BstH2I RGCGCY 1 cut(s) 138
BstHHI GCGC 2 cut(s) 54, 137
BstKTI GATC 2 cut(s) 69, 181
BstMBI GATC 2 cut(s) 66, 178
BstNI CCWGG 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 174
BtgI CCRYGG 1 cut(s) 102
CciI TCATGA 1 cut(s) 195
CfoI GCGC 2 cut(s) 54, 137
Csp6I GTAC 1 cut(s) 236
CviAII CATG 3 cut(s) 103, 196, 223
CviJI RGCY 3 cut(s) 122, 209, 230
CviKI_1 RGCY 3 cut(s) 122, 209, 230
CviQI GTAC 1 cut(s) 236
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 68, 180
DpnII GATC 2 cut(s) 66, 178
Eco130I CCWWGG 1 cut(s) 102
Eco47III AGCGCT 1 cut(s) 136
Eco57I CTGAAG 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaeI CATG 3 cut(s) 106, 199, 226
FaiI YATR 9 cut(s) 104, 131, 141, 146, 176, 197, 206, 220, 224
FatI CATG 3 cut(s) 102, 195, 222
GlaI GCGC 2 cut(s) 53, 136
HaeII RGCGCY 1 cut(s) 138
HhaI GCGC 2 cut(s) 54, 137
Hin1II CATG 3 cut(s) 106, 199, 226
Hin6I GCGC 2 cut(s) 52, 135
HinP1I GCGC 2 cut(s) 52, 135
HinfI GANTC 2 cut(s) 4, 87
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 2 cut(s) 9, 19
Hpy188III TCNNGA 3 cut(s) 64, 182, 196
HpyAV CCTTC 2 cut(s) 88, 159
HpyF3I CTNAG 1 cut(s) 231
Hsp92II CATG 3 cut(s) 106, 199, 226
HspAI GCGC 2 cut(s) 52, 135
KpnI GGTACC 1 cut(s) 239
Kzo9I GATC 2 cut(s) 66, 178
LpnPI CCDG 5 cut(s) 19, 46, 67, 77, 108
LweI GCATC 2 cut(s) 63, 189
MalI GATC 2 cut(s) 68, 180
MboI GATC 2 cut(s) 66, 178
MboII GAAGA 1 cut(s) 121
MlyI GAGTC 1 cut(s) 96
MnlI CCTC 3 cut(s) 42, 71, 226
MroXI GAANNNNTTC 1 cut(s) 169
MspR9I CCNGG 1 cut(s) 34
Mva1269I GAATGC 1 cut(s) 169
MvaI CCWGG 1 cut(s) 34
NcoI CCATGG 1 cut(s) 102
NdeII GATC 2 cut(s) 66, 178
NlaIII CATG 3 cut(s) 106, 199, 226
NlaIV GGNNCC 1 cut(s) 237
NspI RCATGY 1 cut(s) 226
PagI TCATGA 1 cut(s) 195
PciI ACATGT 1 cut(s) 222
PctI GAATGC 1 cut(s) 169
PdmI GAANNNNTTC 1 cut(s) 169
PfeI GAWTC 1 cut(s) 4
PleI GAGTC 1 cut(s) 95
PpsI GAGTC 1 cut(s) 95
PscI ACATGT 1 cut(s) 222
PsiI TTATAA 1 cut(s) 131
Psp6I CCWGG 1 cut(s) 32
PspGI CCWGG 1 cut(s) 32
PspN4I GGNNCC 1 cut(s) 237
RsaI GTAC 1 cut(s) 237
RsaNI GTAC 1 cut(s) 236
Sau3AI GATC 2 cut(s) 66, 178
SchI GAGTC 1 cut(s) 96
ScrFI CCNGG 1 cut(s) 34
SetI ASST 3 cut(s) 63, 80, 237
SfaNI GCATC 2 cut(s) 63, 189
SfcI CTRYAG 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 32
StyI CCWWGG 1 cut(s) 102
TfiI GAWTC 1 cut(s) 4
TspDTI ATGAA 1 cut(s) 17
XceI RCATGY 1 cut(s) 226
XmnI GAANNNNTTC 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.