Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015742

Physical Location & Seq

Genomic Coordinates Forward (+)

57351601 .. 57353808

Gene Structure 2208 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030193

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGAGTTACCGGACGGGATGTTCCTCTCCGGGAAGTTTGGGTTTCTGTTAGATTTGGAGTAGGACTCGGTTCACACATCTCTATTCACCGTAGCTCTGCCTCTCTCTCTATACATGCCGACGTCCATTCTGCGTTATCTGTAGCAGCGCTCCGACATCATTTTCAGATATGTGGCAGGGCTCTCTCTATTAGAGTTGGATCTCGAGATACTTCATGTTGTGTTCAGATCTATGGGTTTGTGATTATACAGTTTCTATGCCGTCGAAACCCATCCCATCTTGAACTATTCCCGATTGAGCAGTCCGCCCAAGAAGAAGGTAGAGAGGAACTAGAATTAAATATCAAGGATGAATCTGATGAGTTCAGATTACCAACTGACCAGGAACTTGAACAAAAGGCGCATCAACCTCCTGATCTTTCACACCTTCAGGGGAGTTATCCTTTGGATTATGGGACACTGCAGGCTGGTCTTATAAGCGCTTATATCATAAAAACACTCTACTTTGGAAGGCATTCTACAAATCGTGAAGTTGCTCTCATGATGCTTATGGCTTATTTGTCATACATGTTGGCTGAGGTACCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006814 GO:0006873 GO:0006885 GO:0006950 GO:0006970 GO:0008150 GO:0008324 GO:0009628 GO:0009651 GO:0009987 GO:0010107 GO:0010119 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015081 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015385 GO:0015386 GO:0015491 GO:0015672 GO:0016020 GO:0019725 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0030004 GO:0030641 GO:0031090 GO:0034220 GO:0035725 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0090333 GO:0098588 GO:0098655 GO:0098657 GO:0098659 GO:0098660 GO:0098662 GO:0098719 GO:0098739 GO:0098771 GO:0098805 GO:0099516 GO:0099587 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

196

Amino Acids

21.99

Weight (kDa)

6.19

Isoelectric Point (pI)

46.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015742)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0496461 RchiOBHm_Chr6g0290591
rosa_laevigata	RLG00000010223 RLG00000024315 RLG00000030193 RLG00000033623 RLG00000033687 RLG00000034505
rosa_roxburghii	Rroxscaffold_2G00106860
rosa_samantha	Rh2AG158200 Rh2BG164700 Rh3AG329100 Rh5DG468000 Rh6AG265500 Rh6BG316400 Rh7CG240900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	476
AatII	GACGTC	1 cut(s)	126
Acc65I	GGTACC	1 cut(s)	580
AccB1I	GGYRCC	1 cut(s)	580
AciI	CCGC	1 cut(s)	306
AclWI	GGATC	1 cut(s)	208
AcuI	CTGAAG	1 cut(s)	413
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	1 cut(s)	582
AfeI	AGCGCT	2 cut(s)	150, 481
AflIII	ACRYGT	1 cut(s)	567
AgsI	TTSAA	2 cut(s)	284, 392
AjnI	CCWGG	1 cut(s)	381
AloI	GAACNNNNNNTCC	1 cut(s)	38
AluBI	AGCT	1 cut(s)	96
AluI	AGCT	1 cut(s)	96
AlwI	GGATC	1 cut(s)	208
Ama87I	CYCGRG	1 cut(s)	204
Aor51HI	AGCGCT	2 cut(s)	150, 481
ApeKI	GCWGC	1 cut(s)	146
Asp700I	GAANNNNTTC	1 cut(s)	514
Asp718I	GGTACC	1 cut(s)	580
AspLEI	GCGC	3 cut(s)	151, 403, 482
AsuC2I	CCSGG	1 cut(s)	32
AsuHPI	GGTGA	1 cut(s)	80
AvaI	CYCGRG	1 cut(s)	204
BanI	GGYRCC	1 cut(s)	580
BanII	GRGCYC	1 cut(s)	184
BarI	GAAGNNNNNNTAC	2 cut(s)	502, 534
BbvCI	CCTCAGC	1 cut(s)	576
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	280, 285
BceAI	ACGGC	1 cut(s)	246
BciT130I	CCWGG	1 cut(s)	383
BcnI	CCSGG	1 cut(s)	32
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	141, 461
BfoI	RGCGCY	2 cut(s)	152, 483
BglII	AGATCT	1 cut(s)	228
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	2 cut(s)	32, 383
BmeT110I	CYCGRG	1 cut(s)	204
BmiI	GGNNCC	1 cut(s)	582
BmrFI	CCNGG	2 cut(s)	32, 383
BmsI	GCATC	2 cut(s)	412, 534
BplI	GAGNNNNNCTC	2 cut(s)	51, 83
Bpu10I	CCTNAGC	1 cut(s)	576
BpuMI	CCSGG	1 cut(s)	32
BsaHI	GRCGYC	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	11
BseBI	CCWGG	1 cut(s)	383
BseGI	GGATG	3 cut(s)	25, 272, 355
BseMII	CTCAG	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	158
BshNI	GGYRCC	1 cut(s)	580
BsiHKCI	CYCGRG	1 cut(s)	204
BsiSI	CCGG	2 cut(s)	12, 31
BslFI	GGGAC	1 cut(s)	469
BsmFI	GGGAC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	514
BsoBI	CYCGRG	1 cut(s)	204
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	200, 228, 415
BspACI	CCGC	1 cut(s)	306
BspCNI	CTCAG	1 cut(s)	568
BspHI	TCATGA	1 cut(s)	540
BspLI	GGNNCC	1 cut(s)	582
BspMAI	CTGCAG	1 cut(s)	465
BspPI	GGATC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	580
BssMI	GATC	3 cut(s)	200, 228, 415
BssNI	GRCGYC	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	383
Bst4CI	ACNGT	2 cut(s)	92, 252
BstACI	GRCGYC	1 cut(s)	123
BstC8I	GCNNGC	1 cut(s)	465
BstDEI	CTNAG	1 cut(s)	576
BstF5I	GGATG	3 cut(s)	25, 272, 355
BstH2I	RGCGCY	2 cut(s)	152, 483
BstHHI	GCGC	3 cut(s)	151, 403, 482
BstKTI	GATC	3 cut(s)	203, 231, 418
BstMBI	GATC	3 cut(s)	200, 228, 415
BstNI	CCWGG	1 cut(s)	383
BstNSI	RCATGY	2 cut(s)	119, 571
BstSCI	CCNGG	2 cut(s)	30, 381
BstSFI	CTRYAG	2 cut(s)	141, 461
BstV1I	GCAGC	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	200, 228
BstYI	RGATCY	2 cut(s)	200, 228
BtsCI	GGATG	3 cut(s)	25, 272, 355
BtsI	GCAGTG	1 cut(s)	458
BtsIMutI	CAGTG	1 cut(s)	458
Cac8I	GCNNGC	1 cut(s)	465
CciI	TCATGA	1 cut(s)	540
CfoI	GCGC	3 cut(s)	151, 403, 482
Csp6I	GTAC	1 cut(s)	581
CviAII	CATG	4 cut(s)	116, 216, 541, 568
CviJI	RGCY	5 cut(s)	96, 182, 467, 554, 575
CviKI_1	RGCY	5 cut(s)	96, 182, 467, 554, 575
CviQI	GTAC	1 cut(s)	581
DdeI	CTNAG	1 cut(s)	576
DpnI	GATC	3 cut(s)	202, 230, 417
DpnII	GATC	3 cut(s)	200, 228, 415
EciI	GGCGGA	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	184
Eco47III	AGCGCT	2 cut(s)	150, 481
Eco57I	CTGAAG	1 cut(s)	413
Eco88I	CYCGRG	1 cut(s)	204
EcoRII	CCWGG	1 cut(s)	381
EcoT38I	GRGCYC	1 cut(s)	184
FaeI	CATG	4 cut(s)	119, 219, 544, 571
FaqI	GGGAC	1 cut(s)	469
FatI	CATG	4 cut(s)	115, 215, 540, 567
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	3 cut(s)	32, 259, 362
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	3 cut(s)	150, 402, 481
GluI	GCNGC	1 cut(s)	147
HaeII	RGCGCY	2 cut(s)	152, 483
HapII	CCGG	2 cut(s)	12, 31
HhaI	GCGC	3 cut(s)	151, 403, 482
Hin1I	GRCGYC	1 cut(s)	123
Hin1II	CATG	4 cut(s)	119, 219, 544, 571
Hin6I	GCGC	3 cut(s)	149, 401, 480
HinP1I	GCGC	3 cut(s)	149, 401, 480
HinfI	GANTC	2 cut(s)	66, 353
HpaII	CCGG	2 cut(s)	12, 31
HphI	GGTGA	1 cut(s)	80
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	5 cut(s)	155, 168, 228, 358, 368
Hpy188III	TCNNGA	7 cut(s)	204, 206, 281, 292, 413, 527, 541
Hpy8I	GTNNAC	1 cut(s)	74
Hpy99I	CGWCG	2 cut(s)	125, 267
HpyAV	CCTTC	3 cut(s)	311, 437, 504
HpyCH4III	ACNGT	2 cut(s)	92, 252
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	1 cut(s)	463
HpyF3I	CTNAG	1 cut(s)	576
HpySE526I	ACGT	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	123
Hsp92II	CATG	4 cut(s)	119, 219, 544, 571
HspAI	GCGC	3 cut(s)	149, 401, 480
KpnI	GGTACC	1 cut(s)	584
Kzo9I	GATC	3 cut(s)	200, 228, 415
LmnI	GCTCC	1 cut(s)	156
LpnPI	CCDG	9 cut(s)	25, 44, 163, 368, 395, 416, 426, 449, 453
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	2 cut(s)	412, 534
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	123
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	3 cut(s)	202, 230, 417
MboI	GATC	3 cut(s)	200, 228, 415
MboII	GAAGA	1 cut(s)	326
MflI	RGATCY	2 cut(s)	200, 228
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	1 cut(s)	335
MlyI	GAGTC	1 cut(s)	60
MmeI	TCCRAC	2 cut(s)	178, 178
MnlI	CCTC	5 cut(s)	36, 112, 319, 420, 571
MroXI	GAANNNNTTC	1 cut(s)	514
MseI	TTAA	1 cut(s)	338
MspI	CCGG	2 cut(s)	12, 31
MspR9I	CCNGG	2 cut(s)	32, 383
Mva1269I	GAATGC	1 cut(s)	514
MvaI	CCWGG	1 cut(s)	383
NciI	CCSGG	1 cut(s)	32
NdeII	GATC	3 cut(s)	200, 228, 415
NlaIII	CATG	4 cut(s)	119, 219, 544, 571
NlaIV	GGNNCC	1 cut(s)	582
NspI	RCATGY	2 cut(s)	119, 571
PaeR7I	CTCGAG	1 cut(s)	204
PagI	TCATGA	1 cut(s)	540
PciI	ACATGT	1 cut(s)	567
PctI	GAATGC	1 cut(s)	514
PdmI	GAANNNNTTC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	353
PfoI	TCCNGGA	1 cut(s)	30
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
PscI	ACATGT	1 cut(s)	567
PsiI	TTATAA	1 cut(s)	476
Psp6I	CCWGG	1 cut(s)	381
PspGI	CCWGG	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	582
PstI	CTGCAG	1 cut(s)	465
PsuI	RGATCY	2 cut(s)	200, 228
RsaI	GTAC	1 cut(s)	582
RsaNI	GTAC	1 cut(s)	581
SaqAI	TTAA	1 cut(s)	338
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	3 cut(s)	200, 228, 415
SchI	GAGTC	1 cut(s)	60
ScrFI	CCNGG	2 cut(s)	32, 383
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	6 cut(s)	98, 126, 322, 412, 429, 582
SfaNI	GCATC	2 cut(s)	412, 534
SfcI	CTRYAG	2 cut(s)	141, 461
Sfr274I	CTCGAG	1 cut(s)	204
SlaI	CTCGAG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	1 cut(s)	335
SsiI	CCGC	1 cut(s)	306
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	30, 381
TaaI	ACNGT	2 cut(s)	92, 252
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	205, 265
TasI	AATT	1 cut(s)	335
TfiI	GAWTC	1 cut(s)	353
Tru1I	TTAA	1 cut(s)	338
Tru9I	TTAA	1 cut(s)	338
TscAI	CASTG	1 cut(s)	465
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	2 cut(s)	204, 366
TspRI	CASTG	1 cut(s)	465
XceI	RCATGY	2 cut(s)	119, 571
XhoI	CTCGAG	1 cut(s)	204
XmnI	GAANNNNTTC	1 cut(s)	514
XspI	CTAG	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	124

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.