RchiOBHm_Chr3g0497071

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0013134
Physical Location & Seq
Forward (+)
48697124 .. 48699842
2719 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
ATGGTAGGGCAGGTCCTGGTGGGATGCATACCCATCGGTGGCGCCTTGAGTTTCAGTAATTCGATACAACCATGTCCCATAGGAAGAGGAAGAGGAAGAGGAGGAGGCAGAGGTCGGCGGATTACGGCATCATCATCAGTAAACGGCGGCCACCAGAATCACTACGGTGTTCTGGGCCTTACACGCTATGCCACCTCCGCCGATATCAAGAGGGCTTATCGCCTTCTCGCTCGCAAGTATCATCCTGACGTTAGCAAGGATTCTCAAGGTGGACAAGTATTCAAGAGCATCCGTCAAGCATATGAGATACTATCTAATGAAGCAACCAGGATTGAGTATGACCAAGAACTTAAATTTCAGAAAGAGACTGGTAGACAATATAGAGGAAAACGGAACTACAGTCCTGAATTCGAAGATGGTGTAAGGATCTATAAGTGGGCTGAGGTGAGGCAGAAGATTAAACGTGAGAGACAGTGGGAACATTATAATGTAAATGAAGAGACATCATATGGTAAACCAGATGAAGCATCTGAAGGAGAGCCATCCCAGGAGAGAGGTTCCTTCAGCGAAGTGCTTAGATCTGCCTTTGTATCTTTGTTTTTATTGCAGACGTTTGGATCCCGTTTGTCTCTCACTTTTAGTAGTTTGATGGCCTTGTTTGATAGGAAGTTGGATGCTGGATATAAGATTGGTTACGTCATTGCATGGATCTTGGGTGGGAGGGGTGGTATCTTGCTCACTCTGTGTTTATCTTTTGCAAGTTGGGTTTGTGGAAAAACCAGCAGCAGTATGGTTGCTCTGGTGGTGGTAGCCATGTGGGTTGGCTCCAATCTTGCAAGATTTGCACCACTTCCGCAAGGTGCTCTTCTTACACTCCTCTACATGTCTATCAAGCTACAAGGTGATTTGAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

304

Amino Acids

33.79

Weight (kDa)

9.69

Isoelectric Point (pI)

40.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 53 - 114 1.8e-19 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013134)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G18140
fragaria_vesca FvH4_1g28130 FvH4_1g28130
malus_domestica MD12G1003800.v1.1
prunus_persica Prupe.7G004300_v2.0.a1
pyrus_communis pycom12g00320
rosa_chinensis RchiOBHm_Chr3g0497071
rosa_laevigata RLG00000022482
rosa_multiflora Rmu_co8330937.1_g000001 Rmu_sc0011396.1_g000005 Rmu_ssc0000003.1_g000038
rosa_roxburghii Rroxscaffold_6G00388410
rosa_rugosa Rorug03G0289400
rosa_samantha Rh3AG333900 Rh3BG371000 Rh3CG367900 Rh3DG368900
rosa_wichuraiana Rw3G029310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
AccB1I GGYRCC 1 cut(s) 41
AccI GTMKAC 1 cut(s) 373
AciI CCGC 4 cut(s) 118, 147, 198, 854
AclWI GGATC 4 cut(s) 434, 612, 625, 716
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 2 cut(s) 353, 407
AcuI CTGAAG 2 cut(s) 547, 552
AcyI GRCGYC 1 cut(s) 42
AdeI CACNNNGTG 1 cut(s) 744
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 1 cut(s) 882
AgsI TTSAA 2 cut(s) 283, 910
AjnI CCWGG 3 cut(s) 15, 326, 546
AleI CACNNNNGTG 1 cut(s) 165
AluBI AGCT 1 cut(s) 895
AluI AGCT 1 cut(s) 895
Alw21I GWGCWC 1 cut(s) 865
Alw26I GTCTC 4 cut(s) 359, 463, 494, 633
AlwI GGATC 4 cut(s) 434, 612, 625, 716
AlwNI CAGNNNCTG 1 cut(s) 16
AoxI GGCC 3 cut(s) 148, 175, 651
ApeKI GCWGC 1 cut(s) 783
ApoI RAATTY 2 cut(s) 353, 407
AspLEI GCGC 1 cut(s) 44
AspS9I GGNCC 2 cut(s) 13, 175
AsuHPI GGTGA 2 cut(s) 457, 914
AsuII TTCGAA 1 cut(s) 411
AvaII GGWCC 1 cut(s) 13
BamHI GGATCC 1 cut(s) 617
BanI GGYRCC 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 865
BbvCI CCTCAGC 1 cut(s) 441
BbvI GCAGC 1 cut(s) 795
BccI CCATC 4 cut(s) 41, 410, 550, 643
BceAI ACGGC 2 cut(s) 141, 160
BcgI CGANNNNNNTGC 2 cut(s) 16, 50
BciT130I CCWGG 3 cut(s) 17, 328, 548
BcoDI GTCTC 4 cut(s) 359, 463, 494, 633
BfmI CTRYAG 1 cut(s) 397
BfoI RGCGCY 1 cut(s) 45
BglII AGATCT 1 cut(s) 578
BisI GCNGC 2 cut(s) 148, 784
BlsI GCNGC 2 cut(s) 149, 785
Bme1390I CCNGG 3 cut(s) 17, 328, 548
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 2 cut(s) 13, 175
BmiI GGNNCC 4 cut(s) 43, 559, 619, 826
BmrFI CCNGG 3 cut(s) 17, 328, 548
BmsI GCATC 5 cut(s) 14, 137, 297, 536, 664
Bpu10I CCTNAGC 1 cut(s) 441
Bpu14I TTCGAA 1 cut(s) 411
BpuEI CTTGAG 2 cut(s) 67, 249
BsaHI GRCGYC 1 cut(s) 42
BsaJI CCNNGG 1 cut(s) 546
BsaXI ACNNNNNCTCC 2 cut(s) 712, 742
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 373
Bse3DI GCAATG 1 cut(s) 699
BseBI CCWGG 3 cut(s) 17, 328, 548
BseDI CCNNGG 1 cut(s) 546
BseGI GGATG 5 cut(s) 29, 241, 288, 542, 679
BseLI CCNNNNNNNGG 1 cut(s) 38
BseMI GCAATG 1 cut(s) 699
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 1 cut(s) 373
BseRI GAGGAG 3 cut(s) 114, 117, 866
BseXI GCAGC 1 cut(s) 795
BshFI GGCC 3 cut(s) 150, 177, 653
BshNI GGYRCC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 865
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 1 cut(s) 38
BsmAI GTCTC 4 cut(s) 359, 463, 494, 633
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 3 cut(s) 150, 177, 653
Bsp119I TTCGAA 1 cut(s) 411
Bsp1286I GDGCHC 1 cut(s) 865
Bsp143I GATC 4 cut(s) 426, 578, 617, 708
BspACI CCGC 4 cut(s) 118, 147, 198, 854
BspANI GGCC 3 cut(s) 150, 177, 653
BspCNI CTCAG 1 cut(s) 433
BspLI GGNNCC 4 cut(s) 43, 559, 619, 826
BspPI GGATC 4 cut(s) 434, 612, 625, 716
BspQI GCTCTTC 1 cut(s) 870
BspT104I TTCGAA 1 cut(s) 411
BspT107I GGYRCC 1 cut(s) 41
BsrDI GCAATG 1 cut(s) 699
BsrI ACTGG 1 cut(s) 373
BssECI CCNNGG 1 cut(s) 546
BssMI GATC 4 cut(s) 426, 578, 617, 708
BssNI GRCGYC 1 cut(s) 42
Bst2UI CCWGG 3 cut(s) 17, 328, 548
Bst4CI ACNGT 3 cut(s) 167, 401, 474
Bst6I CTCTTC 5 cut(s) 79, 85, 91, 492, 870
BstACI GRCGYC 1 cut(s) 42
BstAPI GCANNNNNTGC 1 cut(s) 842
BstBI TTCGAA 1 cut(s) 411
BstC8I GCNNGC 1 cut(s) 232
BstDEI CTNAG 2 cut(s) 441, 575
BstF5I GGATG 5 cut(s) 29, 241, 288, 542, 679
BstH2I RGCGCY 1 cut(s) 45
BstHHI GCGC 1 cut(s) 44
BstKTI GATC 4 cut(s) 429, 581, 620, 711
BstMAI GTCTC 4 cut(s) 359, 463, 494, 633
BstMBI GATC 4 cut(s) 426, 578, 617, 708
BstMWI GCNNNNNNNGC 3 cut(s) 183, 197, 842
BstNI CCWGG 3 cut(s) 17, 328, 548
BstNSI RCATGY 1 cut(s) 886
BstSCI CCNGG 3 cut(s) 15, 326, 546
BstSFI CTRYAG 1 cut(s) 397
BstV1I GCAGC 1 cut(s) 795
BstX2I RGATCY 4 cut(s) 426, 578, 617, 708
BstYI RGATCY 4 cut(s) 426, 578, 617, 708
BsuRI GGCC 3 cut(s) 150, 177, 653
BtsCI GGATG 5 cut(s) 29, 241, 288, 542, 679
BtsIMutI CAGTG 1 cut(s) 479
Cac8I GCNNGC 1 cut(s) 232
CaiI CAGNNNCTG 1 cut(s) 16
CfoI GCGC 1 cut(s) 44
Cfr13I GGNCC 2 cut(s) 13, 175
CviAII CATG 4 cut(s) 72, 705, 814, 883
CviJI RGCY 9 cut(s) 150, 177, 215, 440, 541, 653, 812, 825, 895
CviKI_1 RGCY 9 cut(s) 150, 177, 215, 440, 541, 653, 812, 825, 895
DdeI CTNAG 2 cut(s) 441, 575
DinI GGCGCC 1 cut(s) 43
DpnI GATC 4 cut(s) 428, 580, 619, 710
DpnII GATC 4 cut(s) 426, 578, 617, 708
DraIII CACNNNGTG 1 cut(s) 744
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 5 cut(s) 79, 85, 91, 492, 870
EarI CTCTTC 5 cut(s) 79, 85, 91, 492, 870
EciI GGCGGA 2 cut(s) 133, 187
Eco32I GATATC 1 cut(s) 205
Eco47I GGWCC 1 cut(s) 13
Eco57I CTGAAG 2 cut(s) 547, 552
EcoO109I RGGNCCY 1 cut(s) 13
EcoRI GAATTC 1 cut(s) 407
EcoRII CCWGG 3 cut(s) 15, 326, 546
EcoRV GATATC 1 cut(s) 205
EcoT22I ATGCAT 1 cut(s) 29
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
FaeI CATG 4 cut(s) 75, 708, 817, 886
FalI AAGNNNNNCTT 2 cut(s) 849, 881
FaqI GGGAC 1 cut(s) 60
FatI CATG 4 cut(s) 71, 704, 813, 882
FauNDI CATATG 2 cut(s) 301, 508
FblI GTMKAC 1 cut(s) 373
Fnu4HI GCNGC 2 cut(s) 148, 784
FokI GGATG 5 cut(s) 36, 228, 275, 529, 686
Fsp4HI GCNGC 2 cut(s) 148, 784
GlaI GCGC 1 cut(s) 43
GluI GCNGC 2 cut(s) 148, 784
HaeII RGCGCY 1 cut(s) 45
HaeIII GGCC 3 cut(s) 150, 177, 653
HhaI GCGC 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 42
Hin1II CATG 4 cut(s) 75, 708, 817, 886
Hin6I GCGC 1 cut(s) 42
HinP1I GCGC 1 cut(s) 42
HinfI GANTC 2 cut(s) 157, 260
HphI GGTGA 2 cut(s) 457, 914
Hpy166II GTNNAC 4 cut(s) 142, 272, 374, 515
Hpy188I TCNGA 2 cut(s) 360, 532
Hpy188III TCNNGA 4 cut(s) 208, 245, 283, 404
Hpy8I GTNNAC 4 cut(s) 142, 272, 374, 515
HpyAV CCTTC 3 cut(s) 233, 527, 571
HpyCH4III ACNGT 3 cut(s) 167, 401, 474
HpyCH4IV ACGT 4 cut(s) 249, 463, 611, 696
HpyCH4V TGCA 6 cut(s) 27, 607, 704, 758, 836, 845
HpyF10VI GCNNNNNNNGC 3 cut(s) 183, 197, 842
HpyF3I CTNAG 2 cut(s) 441, 575
HpySE526I ACGT 4 cut(s) 249, 463, 611, 696
Hsp92I GRCGYC 1 cut(s) 42
Hsp92II CATG 4 cut(s) 75, 708, 817, 886
HspAI GCGC 1 cut(s) 42
KasI GGCGCC 1 cut(s) 41
Kzo9I GATC 4 cut(s) 426, 578, 617, 708
LguI GCTCTTC 1 cut(s) 870
LmnI GCTCC 1 cut(s) 830
Lsp1109I GCAGC 1 cut(s) 795
LweI GCATC 5 cut(s) 14, 137, 297, 536, 664
MaeII ACGT 4 cut(s) 249, 463, 611, 696
MaeIII GTNAC 1 cut(s) 692
MalI GATC 4 cut(s) 428, 580, 619, 710
MboI GATC 4 cut(s) 426, 578, 617, 708
MboII GAAGA 7 cut(s) 96, 102, 108, 425, 466, 509, 857
MflI RGATCY 4 cut(s) 426, 578, 617, 708
MhlI GDGCHC 1 cut(s) 865
MluCI AATT 4 cut(s) 58, 353, 407, 910
Mly113I GGCGCC 1 cut(s) 42
MmeI TCCRAC 1 cut(s) 651
Mph1103I ATGCAT 1 cut(s) 29
MseI TTAA 3 cut(s) 351, 459, 913
MslI CAYNNNNRTG 2 cut(s) 165, 486
MspR9I CCNGG 3 cut(s) 17, 328, 548
MvaI CCWGG 3 cut(s) 17, 328, 548
MwoI GCNNNNNNNGC 3 cut(s) 183, 197, 842
NarI GGCGCC 1 cut(s) 42
NdeI CATATG 2 cut(s) 301, 508
NdeII GATC 4 cut(s) 426, 578, 617, 708
NlaIII CATG 4 cut(s) 75, 708, 817, 886
NlaIV GGNNCC 4 cut(s) 43, 559, 619, 826
NsiI ATGCAT 1 cut(s) 29
NspI RCATGY 1 cut(s) 886
NspV TTCGAA 1 cut(s) 411
OliI CACNNNNGTG 1 cut(s) 165
PciI ACATGT 1 cut(s) 882
PciSI GCTCTTC 1 cut(s) 870
PfeI GAWTC 2 cut(s) 157, 260
PkrI GCNGC 2 cut(s) 149, 785
PluTI GGCGCC 1 cut(s) 45
PpuMI RGGWCCY 1 cut(s) 13
PscI ACATGT 1 cut(s) 882
PsiI TTATAA 1 cut(s) 486
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 3 cut(s) 15, 326, 546
PspGI CCWGG 3 cut(s) 15, 326, 546
PspN4I GGNNCC 4 cut(s) 43, 559, 619, 826
PspPI GGNCC 2 cut(s) 13, 175
PspPPI RGGWCCY 1 cut(s) 13
PstNI CAGNNNCTG 1 cut(s) 16
PsuI RGATCY 4 cut(s) 426, 578, 617, 708
RseI CAYNNNNRTG 2 cut(s) 165, 486
SapI GCTCTTC 1 cut(s) 870
SaqAI TTAA 3 cut(s) 351, 459, 913
SatI GCNGC 2 cut(s) 148, 784
Sau3AI GATC 4 cut(s) 426, 578, 617, 708
Sau96I GGNCC 2 cut(s) 13, 175
ScrFI CCNGG 3 cut(s) 17, 328, 548
SduI GDGCHC 1 cut(s) 865
SfaNI GCATC 5 cut(s) 14, 137, 297, 536, 664
SfcI CTRYAG 1 cut(s) 397
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 411
SinI GGWCC 1 cut(s) 13
SmiMI CAYNNNNRTG 2 cut(s) 165, 486
SmlI CTYRAG 2 cut(s) 46, 264
SmoI CTYRAG 2 cut(s) 46, 264
Sse9I AATT 4 cut(s) 58, 353, 407, 910
SsiI CCGC 4 cut(s) 118, 147, 198, 854
SspDI GGCGCC 1 cut(s) 41
StyD4I CCNGG 3 cut(s) 15, 326, 546
TaaI ACNGT 3 cut(s) 167, 401, 474
TaiI ACGT 4 cut(s) 252, 466, 614, 699
TaqI TCGA 2 cut(s) 62, 411
TasI AATT 4 cut(s) 58, 353, 407, 910
TauI GCSGC 1 cut(s) 150
TfiI GAWTC 2 cut(s) 157, 260
Tru1I TTAA 3 cut(s) 351, 459, 913
Tru9I TTAA 3 cut(s) 351, 459, 913
TscAI CASTG 1 cut(s) 479
TseI GCWGC 1 cut(s) 783
TspDTI ATGAA 3 cut(s) 333, 510, 537
TspGWI ACGGA 2 cut(s) 281, 406
TspRI CASTG 1 cut(s) 479
VpaK11BI GGWCC 1 cut(s) 13
XapI RAATTY 2 cut(s) 353, 407
XceI RCATGY 1 cut(s) 886
XcmI CCANNNNNNNNNTGG 1 cut(s) 787
XmiI GTMKAC 1 cut(s) 373
Zsp2I ATGCAT 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.