RchiOBHm_Chr2g0095421

Transmembrane protein 184 homolog DDB_G0279555

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0012223
Physical Location & Seq
Forward (+)
8354216 .. 8356581
2366 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1329 bp
ATGGCATCGTCTTCTTCACATACTTCAGTCCATGAAAACATATATGCAGATCTCTACAAACCAGCCGTGATAACTGCAGCTTCCTTTACAGTTGTGGCACTCATTCTCTCCCTTTTTCTCATCCTTCGGCATCTCAGATCATACAACAAGCCTTCAGTCAGTTCCTTTTCCACTCAGAATTGTGAACAAATATGGGTGGTTGCTGTTGTTTTCATGGTACCTGTCTATGCTACTGACTCGATGATATCCTTGTTGAATCCGAAGTTGTCTCTAGCATGTGACATTCTAAGAAGCTGTTATGAAGCGTTTGCCTTGTATTCTTTTGGAAGCTACTTGGTTGCTTGTCTGGAGCTTGCATTATTCATGAATGGCTATTACACAGGAGGTGAGAGAAGAGTAGTAGAATTACTTGAAAATCAATCTGGAAAGATCCTAAACAAAGCATTGGTAGAAGGGGAAGATGAGAATTGCAGGAAACCACACTGGTCTCTTCGCAACTTCTTCAGGCGACCAACTATTATTGGGAAAAATTTGCTCATTATAGTGAAATTCGGTCTTGTACAATATATGATTCTGAAGACAGTTTGTGCATTCCTAGCACTCGTGTTGGAAATCTTTGGCGTCTATGGTGATGGGGAATTCAAGTTTCAGTACGGGTATCCATACATCACGATAGTACTGAATTTCAGCCAGATGTGGGCATTGTATTGCCTTGTGCAATTCTATAATGTGACTCATGAAAGACTTCAACCAATAAGGCCGCTTGCAAAGTTCATCAGCTTTAAGGCTATTGTGTTTGCGACTTGGTGGCAAGGTGTAGGTATTGCGCTGTTGTGTTATTTTGGTGTTCTTCCAAACCAGGAAAAACTACAAACAGGGTTGCAGGATTTCTTGATTTGTATAGAAATGGCAATTGCAGCTGTTGCACATGTGTTTGTCTTTTCGGCAGAACCTTACCATTACATTCCATCTTCTTCTGGGTATGAGAAGATCACCACCACTGAAACAACCAGTGAGGAAGCAGTGAAGTTGGAGGAAGGTGACAGTAGCACACAAGCTGTGGTTGAAACAAAAGAAACTCAGGTCGAGGCTCCCGGAACAAGTGTGACTGAGAGTGTTCAGGACATAGTGTTTGAAGGTGGTCATCATGTTGTCAAGGATGTTGTGTTGACCATAAATCAAGCAATAGGGCCTGTGGAGAAGGGTGTGACAAAGATACAAGAAACCTTCCACCAAAGATCAGATGAGCATGACGATAAGTCGAAGGTTTCAGTTGAGGAGAGTATTGAAGTGACTCTTTCCGATGAAGAAACACATTTGGACCGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0016020 GO:0016021 GO:0031224 GO:0044425
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Solute_trans_a

Protein Analysis

442

Amino Acids

49.64

Weight (kDa)

5.3

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 23 - 319 2.2e-83 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012223)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G23070
fragaria_vesca FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970 FvH4_1g08970
malus_domestica MD02G1095200.v1.1
prunus_persica Prupe.7G196000_v2.0.a1
pyrus_communis pycom02g07520
rosa_chinensis RchiOBHm_Chr2g0095421
rosa_laevigata RLG00000016564
rosa_multiflora Rmu_co8230917.1_g000001 Rmu_sc0010847.1_g000005
rosa_samantha Rh2AG098900 Rh2BG100100 Rh2CG102100 Rh2DG099700
rosa_wichuraiana Rw2G007470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 217
AccB1I GGYRCC 1 cut(s) 217
AciI CCGC 1 cut(s) 761
AclWI GGATC 1 cut(s) 424
AcsI RAATTY 4 cut(s) 529, 548, 638, 682
AcuI CTGAAG 4 cut(s) 9, 138, 487, 596
AcyI GRCGYC 1 cut(s) 621
AfaI GTAC 4 cut(s) 219, 561, 653, 678
AfiI CCNNNNNNNGG 1 cut(s) 697
AflIII ACRYGT 1 cut(s) 928
AgsI TTSAA 7 cut(s) 256, 413, 643, 749, 1067, 1136, 1289
AhdI GACNNNNNGTC 1 cut(s) 1258
AjnI CCWGG 1 cut(s) 858
AluBI AGCT 7 cut(s) 80, 294, 330, 352, 780, 920, 1058
AluI AGCT 7 cut(s) 80, 294, 330, 352, 780, 920, 1058
Alw26I GTCTC 2 cut(s) 273, 492
AlwI GGATC 1 cut(s) 424
AoxI GGCC 2 cut(s) 758, 1190
ApeKI GCWGC 2 cut(s) 77, 917
ApoI RAATTY 4 cut(s) 529, 548, 638, 682
ArsI GACNNNNNNTTYG 2 cut(s) 1115, 1147
Asp700I GAANNNNTTC 1 cut(s) 744
Asp718I GGTACC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 829
AspS9I GGNCC 2 cut(s) 1190, 1321
AsuC2I CCSGG 1 cut(s) 1095
AsuHPI GGTGA 4 cut(s) 398, 641, 985, 1052
AvaII GGWCC 1 cut(s) 1321
BanI GGYRCC 1 cut(s) 217
BauI CACGAG 1 cut(s) 602
BbsI GAAGAC 2 cut(s) 3, 584
BbvI GCAGC 2 cut(s) 89, 929
BccI CCATC 2 cut(s) 626, 976
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 860
BciVI GTATCC 1 cut(s) 669
BcnI CCSGG 1 cut(s) 1095
BcoDI GTCTC 2 cut(s) 273, 492
BfaI CTAG 2 cut(s) 272, 596
BfmI CTRYAG 1 cut(s) 75
BfuI GTATCC 1 cut(s) 669
BglII AGATCT 1 cut(s) 49
BisI GCNGC 3 cut(s) 78, 761, 918
BlsI GCNGC 3 cut(s) 79, 762, 919
BmcAI AGTACT 1 cut(s) 678
Bme1390I CCNGG 2 cut(s) 860, 1095
Bme18I GGWCC 1 cut(s) 1321
BmeRI GACNNNNNGTC 1 cut(s) 1258
BmgT120I GGNCC 2 cut(s) 1190, 1321
BmiI GGNNCC 2 cut(s) 219, 1092
BmrFI CCNGG 2 cut(s) 860, 1095
BmsI GCATC 2 cut(s) 14, 139
BpiI GAAGAC 2 cut(s) 3, 584
BpmI CTGGAG 1 cut(s) 368
BpuMI CCSGG 1 cut(s) 1095
BsaHI GRCGYC 1 cut(s) 621
BsaI GGTCTC 1 cut(s) 492
Bsc4I CCNNNNNNNGG 1 cut(s) 697
Bse1I ACTGG 2 cut(s) 488, 1011
BseBI CCWGG 1 cut(s) 860
BseGI GGATG 2 cut(s) 120, 1165
BseLI CCNNNNNNNGG 1 cut(s) 697
BseMII CTCAG 4 cut(s) 148, 188, 1094, 1101
BseNI ACTGG 2 cut(s) 488, 1011
BseRI GAGGAG 1 cut(s) 1292
BseXI GCAGC 2 cut(s) 89, 929
BshFI GGCC 2 cut(s) 760, 1192
BshNI GGYRCC 1 cut(s) 217
BsiSI CCGG 1 cut(s) 1095
BslI CCNNNNNNNGG 1 cut(s) 697
BsmAI GTCTC 2 cut(s) 273, 492
BsmI GAATGC 1 cut(s) 590
BsnI GGCC 2 cut(s) 760, 1192
Bso31I GGTCTC 1 cut(s) 492
Bsp1407I TGTACA 1 cut(s) 559
Bsp143I GATC 5 cut(s) 49, 137, 429, 990, 1238
BspACI CCGC 1 cut(s) 761
BspANI GGCC 2 cut(s) 760, 1192
BspCNI CTCAG 4 cut(s) 147, 187, 1093, 1102
BspHI TCATGA 2 cut(s) 363, 736
BspLI GGNNCC 2 cut(s) 219, 1092
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 424
BspT107I GGYRCC 1 cut(s) 217
BspTNI GGTCTC 1 cut(s) 492
BsrGI TGTACA 1 cut(s) 559
BsrI ACTGG 2 cut(s) 488, 1011
BssMI GATC 5 cut(s) 49, 137, 429, 990, 1238
BssNI GRCGYC 1 cut(s) 621
BssSI CACGAG 1 cut(s) 602
Bst2BI CACGAG 1 cut(s) 602
Bst2UI CCWGG 1 cut(s) 860
Bst4CI ACNGT 4 cut(s) 91, 583, 1046, 1325
Bst6I CTCTTC 2 cut(s) 388, 495
BstACI GRCGYC 1 cut(s) 621
BstAPI GCANNNNNTGC 1 cut(s) 923
BstAUI TGTACA 1 cut(s) 559
BstC8I GCNNGC 2 cut(s) 354, 765
BstDEI CTNAG 5 cut(s) 134, 174, 287, 1080, 1110
BstF5I GGATG 2 cut(s) 120, 1165
BstHHI GCGC 1 cut(s) 829
BstKTI GATC 5 cut(s) 52, 140, 432, 993, 1241
BstMAI GTCTC 2 cut(s) 273, 492
BstMBI GATC 5 cut(s) 49, 137, 429, 990, 1238
BstMWI GCNNNNNNNGC 3 cut(s) 596, 917, 923
BstNI CCWGG 1 cut(s) 860
BstNSI RCATGY 2 cut(s) 279, 932
BstSCI CCNGG 2 cut(s) 858, 1093
BstSFI CTRYAG 1 cut(s) 75
BstV1I GCAGC 2 cut(s) 89, 929
BstV2I GAAGAC 2 cut(s) 3, 584
BstX2I RGATCY 2 cut(s) 49, 429
BstYI RGATCY 2 cut(s) 49, 429
BsuI GTATCC 1 cut(s) 669
BsuRI GGCC 2 cut(s) 760, 1192
BtsCI GGATG 2 cut(s) 120, 1165
BtsI GCAGTG 1 cut(s) 1029
BtsIMutI CAGTG 4 cut(s) 481, 999, 1018, 1029
Cac8I GCNNGC 2 cut(s) 354, 765
CciI TCATGA 2 cut(s) 363, 736
CfoI GCGC 1 cut(s) 829
Cfr13I GGNCC 2 cut(s) 1190, 1321
CseI GACGC 1 cut(s) 610
Csp6I GTAC 4 cut(s) 218, 560, 652, 677
CviAII CATG 8 cut(s) 32, 214, 276, 364, 737, 929, 1148, 1250
CviQI GTAC 4 cut(s) 218, 560, 652, 677
DdeI CTNAG 5 cut(s) 134, 174, 287, 1080, 1110
DpnI GATC 5 cut(s) 51, 139, 431, 992, 1240
DpnII GATC 5 cut(s) 49, 137, 429, 990, 1238
DriI GACNNNNNGTC 1 cut(s) 1258
Eam1104I CTCTTC 2 cut(s) 388, 495
Eam1105I GACNNNNNGTC 1 cut(s) 1258
EarI CTCTTC 2 cut(s) 388, 495
Eco31I GGTCTC 1 cut(s) 492
Eco32I GATATC 1 cut(s) 246
Eco47I GGWCC 1 cut(s) 1321
Eco57I CTGAAG 4 cut(s) 9, 138, 487, 596
EcoO109I RGGNCCY 1 cut(s) 1190
EcoRI GAATTC 1 cut(s) 638
EcoRII CCWGG 1 cut(s) 858
EcoRV GATATC 1 cut(s) 246
FaeI CATG 8 cut(s) 35, 217, 279, 367, 740, 932, 1151, 1253
FalI AAGNNNNNCTT 2 cut(s) 1281, 1313
FatI CATG 8 cut(s) 31, 213, 275, 363, 736, 928, 1147, 1249
Fnu4HI GCNGC 3 cut(s) 78, 761, 918
FokI GGATG 2 cut(s) 107, 1172
Fsp4HI GCNGC 3 cut(s) 78, 761, 918
FspBI CTAG 2 cut(s) 272, 596
GlaI GCGC 1 cut(s) 828
GluI GCNGC 3 cut(s) 78, 761, 918
GsuI CTGGAG 1 cut(s) 368
HaeIII GGCC 2 cut(s) 760, 1192
HapII CCGG 1 cut(s) 1095
HgaI GACGC 1 cut(s) 610
HhaI GCGC 1 cut(s) 829
Hin1I GRCGYC 1 cut(s) 621
Hin1II CATG 8 cut(s) 35, 217, 279, 367, 740, 932, 1151, 1253
Hin6I GCGC 1 cut(s) 827
HinP1I GCGC 1 cut(s) 827
HincII GTYRAC 1 cut(s) 1170
HindII GTYRAC 1 cut(s) 1170
HinfI GANTC 5 cut(s) 236, 256, 571, 733, 1294
HpaII CCGG 1 cut(s) 1095
HphI GGTGA 4 cut(s) 398, 641, 985, 1052
Hpy166II GTNNAC 2 cut(s) 185, 1170
Hpy188I TCNGA 6 cut(s) 137, 177, 261, 576, 1243, 1303
Hpy188III TCNNGA 7 cut(s) 347, 364, 423, 670, 737, 892, 1121
Hpy8I GTNNAC 2 cut(s) 185, 1170
HpyAV CCTTC 8 cut(s) 134, 162, 446, 1031, 1130, 1195, 1237, 1258
HpyCH4III ACNGT 4 cut(s) 91, 583, 1046, 1325
HpyF10VI GCNNNNNNNGC 3 cut(s) 596, 917, 923
HpyF3I CTNAG 5 cut(s) 134, 174, 287, 1080, 1110
Hsp92I GRCGYC 1 cut(s) 621
Hsp92II CATG 8 cut(s) 35, 217, 279, 367, 740, 932, 1151, 1253
HspAI GCGC 1 cut(s) 827
KpnI GGTACC 1 cut(s) 221
Kzo9I GATC 5 cut(s) 49, 137, 429, 990, 1238
LmnI GCTCC 2 cut(s) 349, 1096
Lsp1109I GCAGC 2 cut(s) 89, 929
LweI GCATC 2 cut(s) 14, 139
MaeI CTAG 2 cut(s) 272, 596
MaeIII GTNAC 6 cut(s) 278, 730, 1040, 1105, 1207, 1291
MalI GATC 5 cut(s) 51, 139, 431, 992, 1240
MboI GATC 5 cut(s) 49, 137, 429, 990, 1238
MfeI CAATTG 1 cut(s) 912
MflI RGATCY 2 cut(s) 49, 429
MluCI AATT 9 cut(s) 178, 404, 466, 529, 548, 638, 682, 719, 912
MlyI GAGTC 3 cut(s) 230, 727, 1288
MmeI TCCRAC 2 cut(s) 588, 1011
MnlI CCTC 5 cut(s) 377, 1009, 1027, 1081, 1270
MroXI GAANNNNTTC 1 cut(s) 744
MseI TTAA 2 cut(s) 783, 1327
MslI CAYNNNNRTG 1 cut(s) 542
MspA1I CMGCKG 1 cut(s) 920
MspI CCGG 1 cut(s) 1095
MspR9I CCNGG 2 cut(s) 860, 1095
MunI CAATTG 1 cut(s) 912
Mva1269I GAATGC 1 cut(s) 590
MvaI CCWGG 1 cut(s) 860
MwoI GCNNNNNNNGC 3 cut(s) 596, 917, 923
NciI CCSGG 1 cut(s) 1095
NdeII GATC 5 cut(s) 49, 137, 429, 990, 1238
NlaIII CATG 8 cut(s) 35, 217, 279, 367, 740, 932, 1151, 1253
NlaIV GGNNCC 2 cut(s) 219, 1092
NmuCI GTSAC 6 cut(s) 278, 730, 1040, 1105, 1207, 1291
NspI RCATGY 2 cut(s) 279, 932
PagI TCATGA 2 cut(s) 363, 736
PciI ACATGT 1 cut(s) 928
PctI GAATGC 1 cut(s) 590
PdmI GAANNNNTTC 1 cut(s) 744
PfeI GAWTC 2 cut(s) 256, 571
PfoI TCCNGGA 1 cut(s) 1093
PkrI GCNGC 3 cut(s) 79, 762, 919
PleI GAGTC 3 cut(s) 230, 727, 1288
PpsI GAGTC 3 cut(s) 230, 727, 1288
PscI ACATGT 1 cut(s) 928
Psp6I CCWGG 1 cut(s) 858
PspGI CCWGG 1 cut(s) 858
PspN4I GGNNCC 2 cut(s) 219, 1092
PspPI GGNCC 2 cut(s) 1190, 1321
PstI CTGCAG 1 cut(s) 79
PsuI RGATCY 2 cut(s) 49, 429
PvuII CAGCTG 1 cut(s) 920
RsaI GTAC 4 cut(s) 219, 561, 653, 678
RsaNI GTAC 4 cut(s) 218, 560, 652, 677
RseI CAYNNNNRTG 1 cut(s) 542
SaqAI TTAA 2 cut(s) 783, 1327
SatI GCNGC 3 cut(s) 78, 761, 918
Sau3AI GATC 5 cut(s) 49, 137, 429, 990, 1238
Sau96I GGNCC 2 cut(s) 1190, 1321
ScaI AGTACT 1 cut(s) 678
SchI GAGTC 3 cut(s) 230, 727, 1288
ScrFI CCNGG 2 cut(s) 860, 1095
SfaNI GCATC 2 cut(s) 14, 139
SfcI CTRYAG 1 cut(s) 75
SinI GGWCC 1 cut(s) 1321
SmiMI CAYNNNNRTG 1 cut(s) 542
Sse9I AATT 9 cut(s) 178, 404, 466, 529, 548, 638, 682, 719, 912
SsiI CCGC 1 cut(s) 761
SspMI CTAG 2 cut(s) 272, 596
StyD4I CCNGG 2 cut(s) 858, 1093
TaaI ACNGT 4 cut(s) 91, 583, 1046, 1325
TaqI TCGA 3 cut(s) 239, 1086, 1262
TaqII GACCGA 1 cut(s) 542
TasI AATT 9 cut(s) 178, 404, 466, 529, 548, 638, 682, 719, 912
TatI WGTACW 2 cut(s) 559, 676
TauI GCSGC 1 cut(s) 763
TfiI GAWTC 2 cut(s) 256, 571
Tru1I TTAA 2 cut(s) 783, 1327
Tru9I TTAA 2 cut(s) 783, 1327
TscAI CASTG 4 cut(s) 488, 1006, 1018, 1029
TseFI GTSAC 6 cut(s) 278, 730, 1040, 1105, 1207, 1291
TseI GCWGC 2 cut(s) 77, 917
Tsp45I GTSAC 6 cut(s) 278, 730, 1040, 1105, 1207, 1291
TspDTI ATGAA 8 cut(s) 48, 202, 315, 352, 380, 753, 763, 1320
TspRI CASTG 4 cut(s) 488, 1006, 1018, 1029
VpaK11BI GGWCC 1 cut(s) 1321
XapI RAATTY 4 cut(s) 529, 548, 638, 682
XceI RCATGY 2 cut(s) 279, 932
XmnI GAANNNNTTC 1 cut(s) 744
XspI CTAG 2 cut(s) 272, 596
ZrmI AGTACT 1 cut(s) 678
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.