Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0015718

Physical Location & Seq

Genomic Coordinates Reverse (-)

38234613 .. 38235018

Gene Structure 406 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 183 bp

ATGCTTGTAAAACGGTGCCGTCTAGCTCCTCAAAGAAGAATCGTTCTCTATTCAGCCATTAGAGCTTCGAACGCAAGCGCTGCTGCCGAGTCTTCTTCTGCTTCTCCGGGACTCTACTCGGCCAAGCAATTTGAGCTCACAGTTCCCAACATTGACTTGGTTCTCGAGGACTTCTGCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

60

Amino Acids

6.53

Weight (kDa)

8.8

Isoelectric Point (pI)

64.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015718)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g15650
rosa_chinensis	RchiOBHm_Chr2g0124801 RchiOBHm_Chr2g0133051
rosa_laevigata	RLG00000007734 RLG00000013906 RLG00000018210 RLG00000019634 RLG00000030079 RLG00000036894
rosa_multiflora	Rmu_sc0000409.1_g000001 Rmu_sc0001929.1_g000002
rosa_rugosa	Rorug07G0325000
rosa_samantha	Rh2CG331800 Rh6DG454600 Rh7AG293900
rosa_wichuraiana	Rw1G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	15
AcoI	YGGCCR	1 cut(s)	120
AfeI	AGCGCT	1 cut(s)	79
AluBI	AGCT	3 cut(s)	26, 65, 136
AluI	AGCT	3 cut(s)	26, 65, 136
Alw21I	GWGCWC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	164
Aor51HI	AGCGCT	1 cut(s)	79
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	2 cut(s)	80, 83
AspLEI	GCGC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	108
AsuII	TTCGAA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	1 cut(s)	138
BbsI	GAAGAC	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	138
BbvI	GCAGC	2 cut(s)	67, 70
BceAI	ACGGC	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	108
BfaI	CTAG	2 cut(s)	23, 181
BfoI	RGCGCY	1 cut(s)	81
BisI	GCNGC	2 cut(s)	81, 84
BlsI	GCNGC	2 cut(s)	82, 85
Bme1390I	CCNGG	1 cut(s)	108
BmeT110I	CYCGRG	1 cut(s)	164
BmiI	GGNNCC	1 cut(s)	17
BmrFI	CCNGG	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	84
Bpu14I	TTCGAA	1 cut(s)	68
BpuMI	CCSGG	1 cut(s)	108
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	67, 70
BshFI	GGCC	1 cut(s)	122
BshNI	GGYRCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	107
BslFI	GGGAC	1 cut(s)	123
BsmFI	GGGAC	1 cut(s)	123
BsnI	GGCC	1 cut(s)	122
BsoBI	CYCGRG	1 cut(s)	164
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	1 cut(s)	138
BspANI	GGCC	1 cut(s)	122
BspLI	GGNNCC	1 cut(s)	17
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	15
Bst4CI	ACNGT	2 cut(s)	15, 142
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	76
BstH2I	RGCGCY	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	80
BstMWI	GCNNNNNNNGC	4 cut(s)	62, 71, 80, 133
BstSCI	CCNGG	1 cut(s)	106
BstV1I	GCAGC	2 cut(s)	67, 70
BstV2I	GAAGAC	1 cut(s)	84
BsuRI	GGCC	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	1 cut(s)	80
CviJI	RGCY	5 cut(s)	26, 56, 65, 122, 136
CviKI_1	RGCY	5 cut(s)	26, 56, 65, 122, 136
EaeI	YGGCCR	1 cut(s)	120
Ecl136II	GAGCTC	1 cut(s)	136
Eco24I	GRGCYC	1 cut(s)	138
Eco47III	AGCGCT	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	136
Eco88I	CYCGRG	1 cut(s)	164
EcoICRI	GAGCTC	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	138
FaqI	GGGAC	1 cut(s)	123
Fnu4HI	GCNGC	2 cut(s)	81, 84
FriOI	GRGCYC	1 cut(s)	138
Fsp4HI	GCNGC	2 cut(s)	81, 84
FspBI	CTAG	2 cut(s)	23, 181
GlaI	GCGC	1 cut(s)	79
GluI	GCNGC	2 cut(s)	81, 84
HaeII	RGCGCY	1 cut(s)	81
HaeIII	GGCC	1 cut(s)	122
HapII	CCGG	1 cut(s)	107
HhaI	GCGC	1 cut(s)	80
Hin6I	GCGC	1 cut(s)	78
HinP1I	GCGC	1 cut(s)	78
HinfI	GANTC	3 cut(s)	39, 89, 111
HpaII	CCGG	1 cut(s)	107
Hpy188III	TCNNGA	1 cut(s)	164
HpyCH4III	ACNGT	2 cut(s)	15, 142
HpyF10VI	GCNNNNNNNGC	4 cut(s)	62, 71, 80, 133
HspAI	GCGC	1 cut(s)	78
LmnI	GCTCC	1 cut(s)	31
LpnPI	CCDG	1 cut(s)	120
Lsp1109I	GCAGC	2 cut(s)	67, 70
MaeI	CTAG	2 cut(s)	23, 181
MboII	GAAGA	3 cut(s)	48, 84, 87
MhlI	GDGCHC	1 cut(s)	138
MluCI	AATT	1 cut(s)	128
MlyI	GAGTC	2 cut(s)	98, 105
MnlI	CCTC	2 cut(s)	39, 160
MspI	CCGG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	4 cut(s)	62, 71, 80, 133
NciI	CCSGG	1 cut(s)	108
NlaIV	GGNNCC	1 cut(s)	17
NmeAIII	GCCGAG	2 cut(s)	98, 112
NspV	TTCGAA	1 cut(s)	68
PaeR7I	CTCGAG	1 cut(s)	164
PfeI	GAWTC	1 cut(s)	39
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	2 cut(s)	82, 85
PleI	GAGTC	2 cut(s)	97, 105
PpsI	GAGTC	2 cut(s)	97, 105
Psp124BI	GAGCTC	1 cut(s)	138
PspN4I	GGNNCC	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	138
SatI	GCNGC	2 cut(s)	81, 84
SchI	GAGTC	2 cut(s)	98, 105
ScrFI	CCNGG	1 cut(s)	108
SduI	GDGCHC	1 cut(s)	138
SetI	ASST	3 cut(s)	28, 67, 138
Sfr274I	CTCGAG	1 cut(s)	164
SfuI	TTCGAA	1 cut(s)	68
SlaI	CTCGAG	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	164
SmoI	CTYRAG	1 cut(s)	164
Sse9I	AATT	1 cut(s)	128
SspMI	CTAG	2 cut(s)	23, 181
SstI	GAGCTC	1 cut(s)	138
StyD4I	CCNGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	15, 142
TaqI	TCGA	2 cut(s)	68, 165
TasI	AATT	1 cut(s)	128
TfiI	GAWTC	1 cut(s)	39
TseI	GCWGC	2 cut(s)	80, 83
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XhoI	CTCGAG	1 cut(s)	164
XspI	CTAG	2 cut(s)	23, 181

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.