Rh2CG331800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0015718
Physical Location & Seq
Forward (+)
43593089 .. 43595820
2732 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG331800.1

Sequence Viewer

Length: 225 bp
ATGGACGCCACCGGCTGCTGCCTTCTCACCGTCCATCGAAAGGTACCCCTAAAACCCTCACCGAGTCGACTCACTGGGTTTATAAAAGGAATTCACAATCAAGAAAAGGACCTGGTTGGACGATTCATGAATGTATTTATGAATGTCAAGATATCAAGGTTTCCTCTTATTTATTGTGGAATTCCATTTGAATTCCACTGGAATGTGTTTTATTATGTGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.65

Weight (kDa)

9.61

Isoelectric Point (pI)

36.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 83
Acc65I GGTACC 1 cut(s) 43
AccB1I GGYRCC 1 cut(s) 43
AccI GTMKAC 1 cut(s) 67
AcsI RAATTY 3 cut(s) 90, 180, 191
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 45
AfiI CCNNNNNNNGG 1 cut(s) 40
AgsI TTSAA 1 cut(s) 191
AjnI CCWGG 1 cut(s) 111
ApeKI GCWGC 2 cut(s) 15, 18
ApoI RAATTY 3 cut(s) 90, 180, 191
Asp718I GGTACC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 19, 51
AvaII GGWCC 1 cut(s) 109
BanI GGYRCC 1 cut(s) 43
BbvI GCAGC 2 cut(s) 2, 5
BccI CCATC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 113
BisI GCNGC 2 cut(s) 16, 19
BlsI GCNGC 2 cut(s) 17, 20
Bme1390I CCNGG 1 cut(s) 113
Bme18I GGWCC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 109
BmiI GGNNCC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 113
BmrI ACTGGG 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 6
Bsc4I CCNNNNNNNGG 1 cut(s) 40
Bse118I RCCGGY 1 cut(s) 11
Bse1I ACTGG 2 cut(s) 79, 203
BseBI CCWGG 1 cut(s) 113
BseLI CCNNNNNNNGG 1 cut(s) 40
BseNI ACTGG 2 cut(s) 79, 203
BseXI GCAGC 2 cut(s) 2, 5
BshNI GGYRCC 1 cut(s) 43
BsiSI CCGG 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 40
BspHI TCATGA 1 cut(s) 126
BspLI GGNNCC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 43
BsrFI RCCGGY 1 cut(s) 11
BsrI ACTGG 2 cut(s) 79, 203
BssAI RCCGGY 1 cut(s) 11
BssNI GRCGYC 1 cut(s) 6
Bst2UI CCWGG 1 cut(s) 113
Bst4CI ACNGT 1 cut(s) 31
BstACI GRCGYC 1 cut(s) 6
BstNI CCWGG 1 cut(s) 113
BstSCI CCNGG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 2, 5
BtsIMutI CAGTG 2 cut(s) 72, 196
CciI TCATGA 1 cut(s) 126
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 109
CseI GACGC 1 cut(s) 14
CsiI ACCWGGT 1 cut(s) 111
Csp6I GTAC 1 cut(s) 44
CviAII CATG 1 cut(s) 127
CviJI RGCY 1 cut(s) 15
CviKI_1 RGCY 1 cut(s) 15
CviQI GTAC 1 cut(s) 44
Eco32I GATATC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 109
EcoO109I RGGNCCY 1 cut(s) 109
EcoRI GAATTC 3 cut(s) 90, 180, 191
EcoRII CCWGG 1 cut(s) 111
EcoRV GATATC 1 cut(s) 153
FaeI CATG 1 cut(s) 130
FaiI YATR 4 cut(s) 83, 128, 140, 216
FatI CATG 1 cut(s) 126
FblI GTMKAC 1 cut(s) 67
Fnu4HI GCNGC 2 cut(s) 16, 19
Fsp4HI GCNGC 2 cut(s) 16, 19
GluI GCNGC 2 cut(s) 16, 19
HapII CCGG 1 cut(s) 12
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
Hin1II CATG 1 cut(s) 130
HincII GTYRAC 1 cut(s) 68
HindII GTYRAC 1 cut(s) 68
HinfI GANTC 3 cut(s) 64, 69, 123
HpaII CCGG 1 cut(s) 12
HphI GGTGA 2 cut(s) 19, 51
Hpy166II GTNNAC 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 101, 127, 148
Hpy8I GTNNAC 1 cut(s) 68
HpyAV CCTTC 1 cut(s) 32
HpyCH4III ACNGT 1 cut(s) 31
Hsp92I GRCGYC 1 cut(s) 6
Hsp92II CATG 1 cut(s) 130
KpnI GGTACC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 25, 60, 98, 125, 184
Lsp1109I GCAGC 2 cut(s) 2, 5
MabI ACCWGGT 1 cut(s) 111
MluCI AATT 3 cut(s) 90, 180, 191
MlyI GAGTC 2 cut(s) 63, 73
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 2 cut(s) 67, 174
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 1 cut(s) 12
MspR9I CCNGG 1 cut(s) 113
MvaI CCWGG 1 cut(s) 113
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 45
PagI TCATGA 1 cut(s) 126
PfeI GAWTC 1 cut(s) 123
PkrI GCNGC 2 cut(s) 17, 20
PleI GAGTC 2 cut(s) 63, 72
PpsI GAGTC 2 cut(s) 63, 72
PpuMI RGGWCCY 1 cut(s) 109
PsiI TTATAA 1 cut(s) 83
Psp5II RGGWCCY 1 cut(s) 109
Psp6I CCWGG 1 cut(s) 111
PspGI CCWGG 1 cut(s) 111
PspN4I GGNNCC 1 cut(s) 45
PspPI GGNCC 1 cut(s) 109
PspPPI RGGWCCY 1 cut(s) 109
RsaI GTAC 1 cut(s) 45
RsaNI GTAC 1 cut(s) 44
RseI CAYNNNNRTG 1 cut(s) 201
SalI GTCGAC 1 cut(s) 66
SatI GCNGC 2 cut(s) 16, 19
Sau96I GGNCC 1 cut(s) 109
SchI GAGTC 2 cut(s) 63, 73
ScrFI CCNGG 1 cut(s) 113
SetI ASST 3 cut(s) 45, 114, 161
SexAI ACCWGGT 1 cut(s) 111
SinI GGWCC 1 cut(s) 109
SmiMI CAYNNNNRTG 1 cut(s) 201
Sse9I AATT 3 cut(s) 90, 180, 191
StyD4I CCNGG 1 cut(s) 111
TaaI ACNGT 1 cut(s) 31
TaqI TCGA 2 cut(s) 37, 67
TasI AATT 3 cut(s) 90, 180, 191
TfiI GAWTC 1 cut(s) 123
TscAI CASTG 2 cut(s) 79, 203
TseI GCWGC 2 cut(s) 15, 18
TspDTI ATGAA 3 cut(s) 115, 143, 155
TspRI CASTG 2 cut(s) 79, 203
VpaK11BI GGWCC 1 cut(s) 109
XapI RAATTY 3 cut(s) 90, 180, 191
XmiI GTMKAC 1 cut(s) 67
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.