Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0015718

Physical Location & Seq

Genomic Coordinates Reverse (-)

26904490 .. 26906706

Gene Structure 2217 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018210

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTTGTAAAACGGTGCCGTCTAACTCCTCAAAGAAGAATCTTTCTCTGTTCCGCCATTAGAGCTTCGAACGCAAGCACTGCCGCCAAGTCTTCTTCTTCTTCTTCTTCTCCGGGACTCTACTCAGCCAAGCAATTTGAGCTCACAGTTCCCAACATTGACTTGGTTCTCGAGGACGTCGGCCCCTATCTCATCAACGATGGTGGAAACGTCGACGTTGTGTCCGTCGAAGACGGCGTCTTTCTCTCAAGCTCCAAGTATATTGATTGTTCATTAGATGGTCATGGATTTACATGCCCTTTCTTTTCCTTGCTAGTGACCAAGCCGAGCAGTGGAGATTTTAGGGCTAATGTGAAGCGCCTTGAAGTGGAAACTGAGGAAAAGATCAATCACCTCTCAACAGAGGGCTCAAGGATATCAGGTGATGTTGTCCAGATGCTTCTGAAGCATGTGACGACAGTGAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NifU

Protein Analysis

157

Amino Acids

16.97

Weight (kDa)

6.82

Isoelectric Point (pI)

45.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015718)

Species	Orthologous Gene IDs
pyrus_communis	pycom04g15650
rosa_chinensis	RchiOBHm_Chr2g0124801 RchiOBHm_Chr2g0133051
rosa_laevigata	RLG00000007734 RLG00000013906 RLG00000018210 RLG00000019634 RLG00000030079 RLG00000036894
rosa_multiflora	Rmu_sc0000409.1_g000001 Rmu_sc0001929.1_g000002
rosa_rugosa	Rorug07G0325000
rosa_samantha	Rh2CG331800 Rh6DG454600 Rh7AG293900
rosa_wichuraiana	Rw1G007500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	180
AccB1I	GGYRCC	1 cut(s)	15
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	2 cut(s)	54, 84
AcuI	CTGAAG	1 cut(s)	464
AcyI	GRCGYC	2 cut(s)	177, 237
AfiI	CCNNNNNNNGG	2 cut(s)	332, 367
AgsI	TTSAA	1 cut(s)	365
AhdI	GACNNNNNGTC	1 cut(s)	220
AluBI	AGCT	3 cut(s)	65, 142, 252
AluI	AGCT	3 cut(s)	65, 142, 252
Alw21I	GWGCWC	1 cut(s)	144
Ama87I	CYCGRG	1 cut(s)	170
AoxI	GGCC	1 cut(s)	181
ArsI	GACNNNNNNTTYG	2 cut(s)	222, 254
AspLEI	GCGC	1 cut(s)	360
AspS9I	GGNCC	1 cut(s)	182
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	2 cut(s)	383, 434
AsuII	TTCGAA	1 cut(s)	68
AvaI	CYCGRG	1 cut(s)	170
BanI	GGYRCC	1 cut(s)	15
BanII	GRGCYC	2 cut(s)	144, 410
BbsI	GAAGAC	2 cut(s)	84, 237
Bbv12I	GWGCWC	1 cut(s)	144
BccI	CCATC	2 cut(s)	194, 272
BceAI	ACGGC	2 cut(s)	3, 250
BcnI	CCSGG	1 cut(s)	114
BfaI	CTAG	1 cut(s)	314
BfoI	RGCGCY	1 cut(s)	361
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	1 cut(s)	114
BmeRI	GACNNNNNGTC	1 cut(s)	220
BmeT110I	CYCGRG	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	2 cut(s)	17, 184
BmrFI	CCNGG	1 cut(s)	114
BmsI	GCATC	1 cut(s)	426
BpiI	GAAGAC	2 cut(s)	84, 237
Bpu14I	TTCGAA	1 cut(s)	68
BpuEI	CTTGAG	2 cut(s)	232, 394
BpuMI	CCSGG	1 cut(s)	114
BsaHI	GRCGYC	2 cut(s)	177, 237
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 367
BseLI	CCNNNNNNNGG	2 cut(s)	332, 367
BseMII	CTCAG	2 cut(s)	138, 366
BseRI	GAGGAG	1 cut(s)	18
BshFI	GGCC	1 cut(s)	183
BshNI	GGYRCC	1 cut(s)	15
BsiHKAI	GWGCWC	1 cut(s)	144
BsiHKCI	CYCGRG	1 cut(s)	170
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	129
BslI	CCNNNNNNNGG	2 cut(s)	332, 367
BsmFI	GGGAC	1 cut(s)	129
BsnI	GGCC	1 cut(s)	183
BsoBI	CYCGRG	1 cut(s)	170
Bsp119I	TTCGAA	1 cut(s)	68
Bsp1286I	GDGCHC	2 cut(s)	144, 410
Bsp143I	GATC	1 cut(s)	384
BspACI	CCGC	2 cut(s)	54, 84
BspANI	GGCC	1 cut(s)	183
BspCNI	CTCAG	2 cut(s)	137, 367
BspLI	GGNNCC	2 cut(s)	17, 184
BspT104I	TTCGAA	1 cut(s)	68
BspT107I	GGYRCC	1 cut(s)	15
BssMI	GATC	1 cut(s)	384
BssNI	GRCGYC	2 cut(s)	177, 237
Bst4CI	ACNGT	3 cut(s)	15, 148, 460
BstACI	GRCGYC	2 cut(s)	177, 237
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstBI	TTCGAA	1 cut(s)	68
BstC8I	GCNNGC	1 cut(s)	76
BstDEI	CTNAG	2 cut(s)	124, 375
BstH2I	RGCGCY	1 cut(s)	361
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	1 cut(s)	387
BstMBI	GATC	1 cut(s)	384
BstMWI	GCNNNNNNNGC	5 cut(s)	62, 71, 80, 139, 445
BstNSI	RCATGY	2 cut(s)	297, 452
BstSCI	CCNGG	1 cut(s)	112
BstV2I	GAAGAC	2 cut(s)	84, 237
BsuRI	GGCC	1 cut(s)	183
BtsI	GCAGTG	2 cut(s)	78, 337
BtsIMutI	CAGTG	3 cut(s)	78, 337, 465
Cac8I	GCNNGC	1 cut(s)	76
CfoI	GCGC	1 cut(s)	360
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	226
CspCI	CAANNNNNGTGG	2 cut(s)	184, 219
CviAII	CATG	3 cut(s)	284, 294, 449
CviJI	RGCY	8 cut(s)	65, 128, 142, 183, 252, 325, 347, 408
CviKI_1	RGCY	8 cut(s)	65, 128, 142, 183, 252, 325, 347, 408
DdeI	CTNAG	2 cut(s)	124, 375
DpnI	GATC	1 cut(s)	386
DpnII	GATC	1 cut(s)	384
DriI	GACNNNNNGTC	1 cut(s)	220
Eam1105I	GACNNNNNGTC	1 cut(s)	220
EciI	GGCGGA	1 cut(s)	43
Ecl136II	GAGCTC	1 cut(s)	142
Eco24I	GRGCYC	2 cut(s)	144, 410
Eco32I	GATATC	1 cut(s)	417
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	170
EcoICRI	GAGCTC	1 cut(s)	142
EcoRV	GATATC	1 cut(s)	417
EcoT38I	GRGCYC	2 cut(s)	144, 410
FaeI	CATG	3 cut(s)	287, 297, 452
FaiI	YATR	4 cut(s)	261, 285, 295, 450
FaqI	GGGAC	1 cut(s)	129
FatI	CATG	3 cut(s)	283, 293, 448
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	84
FriOI	GRGCYC	2 cut(s)	144, 410
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	1 cut(s)	314
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	1 cut(s)	84
HaeII	RGCGCY	1 cut(s)	361
HaeIII	GGCC	1 cut(s)	183
HapII	CCGG	1 cut(s)	113
HgaI	GACGC	1 cut(s)	226
HhaI	GCGC	1 cut(s)	360
Hin1I	GRCGYC	2 cut(s)	177, 237
Hin1II	CATG	3 cut(s)	287, 297, 452
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	2 cut(s)	39, 117
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	383, 434
Hpy166II	GTNNAC	1 cut(s)	214
Hpy188I	TCNGA	1 cut(s)	444
Hpy188III	TCNNGA	2 cut(s)	170, 433
Hpy8I	GTNNAC	1 cut(s)	214
Hpy99I	CGWCG	4 cut(s)	182, 215, 218, 230
HpyCH4III	ACNGT	3 cut(s)	15, 148, 460
HpyCH4IV	ACGT	3 cut(s)	177, 210, 216
HpyF10VI	GCNNNNNNNGC	5 cut(s)	62, 71, 80, 139, 445
HpyF3I	CTNAG	2 cut(s)	124, 375
HpySE526I	ACGT	3 cut(s)	177, 210, 216
Hsp92I	GRCGYC	2 cut(s)	177, 237
Hsp92II	CATG	3 cut(s)	287, 297, 452
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	1 cut(s)	384
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	3 cut(s)	126, 405, 446
LweI	GCATC	1 cut(s)	426
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	3 cut(s)	177, 210, 216
MaeIII	GTNAC	2 cut(s)	316, 451
MalI	GATC	1 cut(s)	386
MboI	GATC	1 cut(s)	384
MboII	GAAGA	8 cut(s)	48, 84, 87, 90, 93, 96, 99, 242
MhlI	GDGCHC	2 cut(s)	144, 410
MluCI	AATT	2 cut(s)	134, 466
MlyI	GAGTC	1 cut(s)	111
MnlI	CCTC	5 cut(s)	39, 166, 370, 397, 404
MseI	TTAA	1 cut(s)	469
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	5 cut(s)	62, 71, 80, 139, 445
NciI	CCSGG	1 cut(s)	114
NdeII	GATC	1 cut(s)	384
NlaIII	CATG	3 cut(s)	287, 297, 452
NlaIV	GGNNCC	2 cut(s)	17, 184
NmeAIII	GCCGAG	1 cut(s)	351
NmuCI	GTSAC	2 cut(s)	316, 451
NspI	RCATGY	2 cut(s)	297, 452
NspV	TTCGAA	1 cut(s)	68
PaeR7I	CTCGAG	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	2 cut(s)	222, 234
PfeI	GAWTC	1 cut(s)	39
PflFI	GACNNNGTC	1 cut(s)	236
PfoI	TCCNGGA	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	111
PpsI	GAGTC	1 cut(s)	111
Psp124BI	GAGCTC	1 cut(s)	144
PspN4I	GGNNCC	2 cut(s)	17, 184
PspPI	GGNCC	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	236
SacI	GAGCTC	1 cut(s)	144
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	469
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	384
Sau96I	GGNCC	1 cut(s)	182
SchI	GAGTC	1 cut(s)	111
ScrFI	CCNGG	1 cut(s)	114
SduI	GDGCHC	2 cut(s)	144, 410
SetI	ASST	8 cut(s)	67, 144, 180, 213, 219, 254, 396, 424
SfaNI	GCATC	1 cut(s)	426
Sfr274I	CTCGAG	1 cut(s)	170
SfuI	TTCGAA	1 cut(s)	68
SgrDI	CGTCGACG	1 cut(s)	212
SlaI	CTCGAG	1 cut(s)	170
SmlI	CTYRAG	3 cut(s)	170, 247, 409
SmoI	CTYRAG	3 cut(s)	170, 247, 409
Sse9I	AATT	2 cut(s)	134, 466
SsiI	CCGC	2 cut(s)	54, 84
SspMI	CTAG	1 cut(s)	314
SstI	GAGCTC	1 cut(s)	144
StyD4I	CCNGG	1 cut(s)	112
TaaI	ACNGT	3 cut(s)	15, 148, 460
TaiI	ACGT	3 cut(s)	180, 213, 219
TaqI	TCGA	4 cut(s)	68, 171, 213, 228
TasI	AATT	2 cut(s)	134, 466
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	39
Tru1I	TTAA	1 cut(s)	469
Tru9I	TTAA	1 cut(s)	469
TscAI	CASTG	3 cut(s)	85, 337, 465
TseFI	GTSAC	2 cut(s)	316, 451
Tsp45I	GTSAC	2 cut(s)	316, 451
TspDTI	ATGAA	1 cut(s)	261
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	3 cut(s)	85, 337, 465
Tth111I	GACNNNGTC	1 cut(s)	236
XceI	RCATGY	2 cut(s)	297, 452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160
XhoI	CTCGAG	1 cut(s)	170
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	314
ZraI	GACGTC	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.