Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009005

Physical Location & Seq

Genomic Coordinates Reverse (-)

42603673 .. 42605915

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 135 bp

ATGAAGTGTACTGAAGAAGCTCATCGCCCCGTTGATTGTGGCACAGTGGCCAAATGGATATTGAAGAACAGTGCCGAATGTGAAAATATGAATTGGATATTGGCTAATTCCAAGCCCTGCCCCAAGTGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000151 GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019899 GO:0030162 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031624 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044390 GO:0044424 GO:0044464 GO:0045732 GO:0045862 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0060255 GO:0061136 GO:0061630 GO:0061659 GO:0065007 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

IBR

Protein Analysis

44

Amino Acids

4.98

Weight (kDa)

8.35

Isoelectric Point (pI)

45.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009005)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G65430
fragaria_vesca	FvH4_6g00130 FvH4_6g00130
malus_domestica	MD04G1248300.v1.1 MD12G1262400.v1.1
prunus_persica	Prupe.6G364600_v2.0.a1
pyrus_communis	pycom04g21900 pycom12g24160
rosa_chinensis	RchiOBHm_Chr2g0127711 RchiOBHm_Chr3g0447471 RchiOBHm_Chr6g0267381
rosa_laevigata	RLG00000025995
rosa_multiflora	Rmu_sc0006572.1_g000005
rosa_roxburghii	Rroxscaffold_5G00344110 Rroxscaffold_6G00425690
rosa_rugosa	Rorug02G0602100
rosa_samantha	Rh2BG278300 Rh3AG002300 Rh3BG001800 Rh3CG002100 Rh3DG002200
rosa_wichuraiana	Rw3G000120

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	48
AcuI	CTGAAG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	10
AgsI	TTSAA	1 cut(s)	64
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AluBI	AGCT	1 cut(s)	20
AluI	AGCT	1 cut(s)	20
AoxI	GGCC	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	50
BshFI	GGCC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	50
BspANI	GGCC	1 cut(s)	50
Bst4CI	ACNGT	2 cut(s)	46, 71
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BsuRI	GGCC	1 cut(s)	50
BtgZI	GCGATG	1 cut(s)	8
BtsIMutI	CAGTG	2 cut(s)	51, 76
Csp6I	GTAC	1 cut(s)	9
CviJI	RGCY	4 cut(s)	20, 50, 104, 115
CviKI_1	RGCY	4 cut(s)	20, 50, 104, 115
CviQI	GTAC	1 cut(s)	9
EaeI	YGGCCR	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	33
FaiI	YATR	1 cut(s)	89
HaeIII	GGCC	1 cut(s)	50
Hpy166II	GTNNAC	1 cut(s)	9
Hpy8I	GTNNAC	1 cut(s)	9
HpyCH4III	ACNGT	2 cut(s)	46, 71
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
LpnPI	CCDG	1 cut(s)	130
MboII	GAAGA	2 cut(s)	26, 76
MlsI	TGGCCA	1 cut(s)	50
MluCI	AATT	2 cut(s)	91, 106
MluNI	TGGCCA	1 cut(s)	50
Mox20I	TGGCCA	1 cut(s)	50
MscI	TGGCCA	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	50
MwoI	GCNNNNNNNGC	1 cut(s)	126
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SetI	ASST	1 cut(s)	22
SgeI	CNNG	3 cut(s)	41, 124, 129
Sse9I	AATT	2 cut(s)	91, 106
TaaI	ACNGT	2 cut(s)	46, 71
TasI	AATT	2 cut(s)	91, 106
TatI	WGTACW	1 cut(s)	8
TscAI	CASTG	2 cut(s)	51, 76
TspDTI	ATGAA	2 cut(s)	17, 104
TspRI	CASTG	2 cut(s)	51, 76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.