RchiOBHm_Chr2g0133051

NifU-like protein 1

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
49696556 .. 49697223
668 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 183 bp
ATGCTTGTAAAACGATGCCGTCTAGCTCCTCAAAGAAGAATCGTTCTATATTCAGCCATTAGAGCTTCGAACGCAAGCGCTGCTGCCGAGTCTTCTTCTGCTTCTCCGGGACTCTACTCGGCCAAGCAATTTGAGCTCACAGTTCCCAACATTGACTTGGTTCTCGAGGACGTCTGCCCCTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

60

Amino Acids

6.48

Weight (kDa)

8.8

Isoelectric Point (pI)

65.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AcoI YGGCCR 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 171
AfeI AGCGCT 1 cut(s) 79
AluBI AGCT 3 cut(s) 26, 65, 136
AluI AGCT 3 cut(s) 26, 65, 136
Alw21I GWGCWC 1 cut(s) 138
Ama87I CYCGRG 1 cut(s) 164
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 1 cut(s) 120
ApeKI GCWGC 2 cut(s) 80, 83
AspLEI GCGC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 108
AsuII TTCGAA 1 cut(s) 68
AvaI CYCGRG 1 cut(s) 164
BanII GRGCYC 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 67, 70
BceAI ACGGC 1 cut(s) 3
BcnI CCSGG 1 cut(s) 108
BfaI CTAG 2 cut(s) 23, 181
BfoI RGCGCY 1 cut(s) 81
BisI GCNGC 2 cut(s) 81, 84
BlsI GCNGC 2 cut(s) 82, 85
Bme1390I CCNGG 1 cut(s) 108
BmeT110I CYCGRG 1 cut(s) 164
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 84
Bpu14I TTCGAA 1 cut(s) 68
BpuMI CCSGG 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 171
BseRI GAGGAG 1 cut(s) 18
BseXI GCAGC 2 cut(s) 67, 70
BshFI GGCC 1 cut(s) 122
BsiHKAI GWGCWC 1 cut(s) 138
BsiHKCI CYCGRG 1 cut(s) 164
BsiSI CCGG 1 cut(s) 107
BslFI GGGAC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 123
BsnI GGCC 1 cut(s) 122
BsoBI CYCGRG 1 cut(s) 164
Bsp119I TTCGAA 1 cut(s) 68
Bsp1286I GDGCHC 1 cut(s) 138
BspANI GGCC 1 cut(s) 122
BspT104I TTCGAA 1 cut(s) 68
BssNI GRCGYC 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 171
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBI TTCGAA 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 76
BstH2I RGCGCY 1 cut(s) 81
BstHHI GCGC 1 cut(s) 80
BstMWI GCNNNNNNNGC 4 cut(s) 62, 71, 80, 133
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 67, 70
BstV2I GAAGAC 1 cut(s) 84
BsuRI GGCC 1 cut(s) 122
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 80
CviJI RGCY 5 cut(s) 26, 56, 65, 122, 136
CviKI_1 RGCY 5 cut(s) 26, 56, 65, 122, 136
EaeI YGGCCR 1 cut(s) 120
Ecl136II GAGCTC 1 cut(s) 136
Eco24I GRGCYC 1 cut(s) 138
Eco47III AGCGCT 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 136
Eco88I CYCGRG 1 cut(s) 164
EcoICRI GAGCTC 1 cut(s) 136
EcoT38I GRGCYC 1 cut(s) 138
FaiI YATR 1 cut(s) 49
FaqI GGGAC 1 cut(s) 123
Fnu4HI GCNGC 2 cut(s) 81, 84
FriOI GRGCYC 1 cut(s) 138
Fsp4HI GCNGC 2 cut(s) 81, 84
FspBI CTAG 2 cut(s) 23, 181
GlaI GCGC 1 cut(s) 79
GluI GCNGC 2 cut(s) 81, 84
HaeII RGCGCY 1 cut(s) 81
HaeIII GGCC 1 cut(s) 122
HapII CCGG 1 cut(s) 107
HhaI GCGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 171
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 3 cut(s) 39, 89, 111
HpaII CCGG 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 164
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 171
HpyF10VI GCNNNNNNNGC 4 cut(s) 62, 71, 80, 133
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 171
HspAI GCGC 1 cut(s) 78
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 1 cut(s) 120
Lsp1109I GCAGC 2 cut(s) 67, 70
LweI GCATC 1 cut(s) 5
MaeI CTAG 2 cut(s) 23, 181
MaeII ACGT 1 cut(s) 171
MboII GAAGA 3 cut(s) 48, 84, 87
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 128
MlyI GAGTC 2 cut(s) 98, 105
MnlI CCTC 2 cut(s) 39, 160
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 108
MwoI GCNNNNNNNGC 4 cut(s) 62, 71, 80, 133
NciI CCSGG 1 cut(s) 108
NmeAIII GCCGAG 2 cut(s) 98, 112
NspV TTCGAA 1 cut(s) 68
PaeR7I CTCGAG 1 cut(s) 164
PfeI GAWTC 1 cut(s) 39
PfoI TCCNGGA 1 cut(s) 106
PkrI GCNGC 2 cut(s) 82, 85
PleI GAGTC 2 cut(s) 97, 105
PpsI GAGTC 2 cut(s) 97, 105
Psp124BI GAGCTC 1 cut(s) 138
SacI GAGCTC 1 cut(s) 138
SatI GCNGC 2 cut(s) 81, 84
SchI GAGTC 2 cut(s) 98, 105
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 138
SetI ASST 4 cut(s) 28, 67, 138, 174
SfaNI GCATC 1 cut(s) 5
Sfr274I CTCGAG 1 cut(s) 164
SfuI TTCGAA 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 164
SmlI CTYRAG 1 cut(s) 164
SmoI CTYRAG 1 cut(s) 164
Sse9I AATT 1 cut(s) 128
SspMI CTAG 2 cut(s) 23, 181
SstI GAGCTC 1 cut(s) 138
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 68, 165
TasI AATT 1 cut(s) 128
TfiI GAWTC 1 cut(s) 39
TseI GCWGC 2 cut(s) 80, 83
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 164
XspI CTAG 2 cut(s) 23, 181
ZraI GACGTC 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.