RchiOBHm_Chr2g0145481

Plant protein of unknown function

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0010559
Physical Location & Seq
Forward (+)
63180687 .. 63182631
1945 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1221 bp
ATGGGGAAGGGAAACCTTATAATTGCAAGCAGATGGTTAATCTTGCAGAAGATAACCAGCAATTGCAGAAGGAGATTTCAAGAAAGTTTGGCTTGTACTACTTTTCCTACATTTGATGCAAGAGGTTTCCATCAAGTTCGTGGTGGCAGCTCATCATTGACAGAAGAGCTGGAGGGTATTCTTAATCCTGTAGATCAAGGGAGGGAGAGTAGTACTAACTCTATGACCTGCATTTACAAGGTTCCTAGCACCATGAGTCAGGTGAACAGGAAGGCTTACGAGCCCAACATTGTGTCCATCGGTCCTTACCATCACGGAGTTGAAAGCCTACAAGAAATGGAGAAGCTTAAGCACACATACTTTCGGCGCCTCTTTCAACCAAACTACCATGATCGGTTGGATGATGAAGTAGTGTCGCTGAAGAAGAAGGCGGTAGATGATGCGAAGAAGGCAATGGAGGAATTGGAGGTGGCGGCTAGGAGCTGCTACTCGGAACAATCCAAGCTTAGCAGCAAGGCGTTTGTAAAGATGATGCTGATTGATGGTTGCTTCATTATAGGGTTGCTCAGGGACTCATTGCAGTCCGATTTTGAGCACACACCCTCCATCATTCAAAGGTGGATGCTTCCAACTCTGCGCCGGGATTTGATCAAGCTCGAAAATCAGCTTCCCCTCTTTGTCTTGCGCAAATTATTTCAGCTGACCAAAGCAAGCACTACTTGTCATGAGAAACCAATTGCAATTTGGGAATTGGAAGCACTAGCCCTTCGCTTCTTTGAGCCGCTACTGCGAGGACATGATGTTCTGACCGAAGCAAGCACTACTTGTCATGAGAAACCAATTGCAATTTGCAGCAGCAGCAAGCACTTTCTTGATCTTTTCCACAGTAAAATCAGTCCGGACTGCTCCACCTGTACAGTACTTCAAGCGCCGCGGCGAGGCAAGCAAACCAAGCAGATTCTATCAGTACAAGAGCTCAAGGAGGCCGGAGTCAAGTTCAGAACAGATCCCACTCGAGGGCCACTAGACATCACTTTCGGCCGCGTCGCTTGGAGTTGGGGGAAGCCTCATCAACTCGGCCAAGGATGTAGGGCTCCTGCACTACCACGGAGTCCTGCACCACTCTCTAGGCAGCAACAGGAGGGTGGCAAAACTCGTCAACAACCTTTGCAAGGAGGTTGGTCCGGATGTTTCCAAGTCCTACTTGTACAAGGTGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

406

Amino Acids

45.85

Weight (kDa)

9.27

Isoelectric Point (pI)

59.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 78 - 346 4.8e-61 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 20
Acc16I TGCGCA 1 cut(s) 686
Acc36I ACCTGC 1 cut(s) 236
AccB1I GGYRCC 1 cut(s) 366
AccII CGCG 2 cut(s) 934, 1044
AccIII TCCGGA 2 cut(s) 898, 1184
AciI CCGC 6 cut(s) 431, 473, 782, 932, 934, 1042
AclWI GGATC 1 cut(s) 1001
AcoI YGGCCR 2 cut(s) 1039, 1078
AcuI CTGAAG 1 cut(s) 440
AcyI GRCGYC 1 cut(s) 367
AfaI GTAC 6 cut(s) 97, 214, 916, 921, 969, 1209
AfiI CCNNNNNNNGG 4 cut(s) 938, 1016, 1017, 1172
AflII CTTAAG 1 cut(s) 347
AgsI TTSAA 5 cut(s) 80, 323, 377, 614, 926
AloI GAACNNNNNNTCC 2 cut(s) 786, 818
AluBI AGCT 9 cut(s) 150, 169, 346, 483, 505, 655, 667, 700, 976
AluI AGCT 9 cut(s) 150, 169, 346, 483, 505, 655, 667, 700, 976
Alw21I GWGCWC 2 cut(s) 597, 978
AlwI GGATC 1 cut(s) 1001
Ama87I CYCGRG 1 cut(s) 1014
Aor13HI TCCGGA 2 cut(s) 898, 1184
AoxI GGCC 4 cut(s) 984, 1019, 1039, 1078
ApeKI GCWGC 7 cut(s) 147, 483, 510, 852, 855, 858, 1132
ArsI GACNNNNNNTTYG 2 cut(s) 1019, 1051
AspLEI GCGC 4 cut(s) 369, 639, 687, 931
AspS9I GGNCC 3 cut(s) 302, 1019, 1182
AsuC2I CCSGG 1 cut(s) 641
AsuHPI GGTGA 1 cut(s) 274
AvaI CYCGRG 1 cut(s) 1014
AvaII GGWCC 2 cut(s) 302, 1182
BanI GGYRCC 1 cut(s) 366
BanII GRGCYC 3 cut(s) 285, 978, 1096
Bbv12I GWGCWC 2 cut(s) 597, 978
BbvI GCAGC 7 cut(s) 159, 470, 522, 864, 867, 870, 1144
BccI CCATC 6 cut(s) 27, 138, 305, 318, 536, 614
BclI TGATCA 1 cut(s) 648
BcnI CCSGG 1 cut(s) 641
BfaI CTAG 5 cut(s) 246, 477, 761, 1025, 1128
BfmI CTRYAG 1 cut(s) 189
BfoI RGCGCY 2 cut(s) 370, 932
BfrI CTTAAG 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 236
BlpI GCTNAGC 1 cut(s) 506
BmcAI AGTACT 2 cut(s) 214, 921
Bme1390I CCNGG 1 cut(s) 641
Bme18I GGWCC 2 cut(s) 302, 1182
BmeT110I CYCGRG 1 cut(s) 1014
BmgT120I GGNCC 3 cut(s) 302, 1019, 1182
BmiI GGNNCC 3 cut(s) 243, 368, 1095
BmrFI CCNGG 1 cut(s) 641
BmsI GCATC 4 cut(s) 106, 430, 522, 612
BpmI CTGGAG 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 566
Bpu1102I GCTNAGC 1 cut(s) 506
BpuEI CTTGAG 1 cut(s) 962
BpuMI CCSGG 1 cut(s) 641
BsaHI GRCGYC 1 cut(s) 367
BsaJI CCNNGG 3 cut(s) 932, 1081, 1106
BsaWI WCCGGW 2 cut(s) 898, 1184
BsaXI ACNNNNNCTCC 4 cut(s) 193, 223, 587, 617
Bsc4I CCNNNNNNNGG 4 cut(s) 938, 1016, 1017, 1172
Bse3DI GCAATG 2 cut(s) 459, 575
BseAI TCCGGA 2 cut(s) 898, 1184
BseDI CCNNGG 3 cut(s) 932, 1081, 1106
BseGI GGATG 4 cut(s) 406, 627, 1091, 1193
BseLI CCNNNNNNNGG 4 cut(s) 938, 1016, 1017, 1172
BseMI GCAATG 2 cut(s) 459, 575
BseMII CTCAG 1 cut(s) 580
BseX3I CGGCCG 1 cut(s) 1039
BseXI GCAGC 7 cut(s) 159, 470, 522, 864, 867, 870, 1144
BsgI GTGCAG 2 cut(s) 1083, 1101
Bsh1236I CGCG 2 cut(s) 934, 1044
Bsh1285I CGRYCG 1 cut(s) 1042
BshFI GGCC 4 cut(s) 986, 1021, 1041, 1080
BshNI GGYRCC 1 cut(s) 366
BsiEI CGRYCG 1 cut(s) 1042
BsiHKAI GWGCWC 2 cut(s) 597, 978
BsiHKCI CYCGRG 1 cut(s) 1014
BsiSI CCGG 4 cut(s) 640, 899, 987, 1185
BslFI GGGAC 1 cut(s) 584
BslI CCNNNNNNNGG 4 cut(s) 938, 1016, 1017, 1172
BsmFI GGGAC 1 cut(s) 584
BsnI GGCC 4 cut(s) 986, 1021, 1041, 1080
BsoBI CYCGRG 1 cut(s) 1014
Bsp1286I GDGCHC 4 cut(s) 285, 597, 978, 1096
Bsp13I TCCGGA 2 cut(s) 898, 1184
Bsp1407I TGTACA 2 cut(s) 914, 1207
Bsp143I GATC 5 cut(s) 193, 391, 648, 874, 1006
Bsp1720I GCTNAGC 1 cut(s) 506
BspACI CCGC 6 cut(s) 431, 473, 782, 932, 934, 1042
BspANI GGCC 4 cut(s) 986, 1021, 1041, 1080
BspCNI CTCAG 1 cut(s) 579
BspEI TCCGGA 2 cut(s) 898, 1184
BspFNI CGCG 2 cut(s) 934, 1044
BspHI TCATGA 2 cut(s) 724, 829
BspLI GGNNCC 3 cut(s) 243, 368, 1095
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 1001
BspQI GCTCTTC 1 cut(s) 159
BspT107I GGYRCC 1 cut(s) 366
BspTI CTTAAG 1 cut(s) 347
BsrDI GCAATG 2 cut(s) 459, 575
BsrGI TGTACA 2 cut(s) 914, 1207
BssECI CCNNGG 3 cut(s) 932, 1081, 1106
BssMI GATC 5 cut(s) 193, 391, 648, 874, 1006
BssNI GRCGYC 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 1081
Bst4CI ACNGT 2 cut(s) 887, 919
Bst6I CTCTTC 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 367
BstAFI CTTAAG 1 cut(s) 347
BstAUI TGTACA 2 cut(s) 914, 1207
BstC8I GCNNGC 5 cut(s) 28, 712, 817, 863, 944
BstDEI CTNAG 2 cut(s) 506, 566
BstDSI CCRYGG 2 cut(s) 932, 1106
BstENI CCTNNNNNAGG 1 cut(s) 1170
BstF5I GGATG 4 cut(s) 406, 627, 1091, 1193
BstFNI CGCG 2 cut(s) 934, 1044
BstH2I RGCGCY 2 cut(s) 370, 932
BstHHI GCGC 4 cut(s) 369, 639, 687, 931
BstKTI GATC 5 cut(s) 196, 394, 651, 877, 1009
BstMBI GATC 5 cut(s) 193, 391, 648, 874, 1006
BstMCI CGRYCG 1 cut(s) 1042
BstMWI GCNNNNNNNGC 5 cut(s) 449, 787, 858, 943, 952
BstSCI CCNGG 1 cut(s) 639
BstSFI CTRYAG 1 cut(s) 189
BstUI CGCG 2 cut(s) 934, 1044
BstV1I GCAGC 7 cut(s) 159, 470, 522, 864, 867, 870, 1144
BstX2I RGATCY 1 cut(s) 1006
BstYI RGATCY 1 cut(s) 1006
BstZI CGGCCG 1 cut(s) 1039
BsuRI GGCC 4 cut(s) 986, 1021, 1041, 1080
BtgI CCRYGG 2 cut(s) 932, 1106
BtsCI GGATG 4 cut(s) 406, 627, 1091, 1193
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 5 cut(s) 28, 712, 817, 863, 944
CciI TCATGA 2 cut(s) 724, 829
CfoI GCGC 4 cut(s) 369, 639, 687, 931
Cfr13I GGNCC 3 cut(s) 302, 1019, 1182
Cfr42I CCGCGG 1 cut(s) 935
CseI GACGC 1 cut(s) 1033
Csp6I GTAC 6 cut(s) 96, 213, 915, 920, 968, 1208
CviAII CATG 5 cut(s) 253, 389, 725, 797, 830
CviQI GTAC 6 cut(s) 96, 213, 915, 920, 968, 1208
DdeI CTNAG 2 cut(s) 506, 566
DinI GGCGCC 1 cut(s) 368
DpnI GATC 5 cut(s) 195, 393, 650, 876, 1008
DpnII GATC 5 cut(s) 193, 391, 648, 874, 1006
EaeI YGGCCR 2 cut(s) 1039, 1078
EagI CGGCCG 1 cut(s) 1039
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
Ecl136II GAGCTC 1 cut(s) 976
EclXI CGGCCG 1 cut(s) 1039
Eco130I CCWWGG 1 cut(s) 1081
Eco24I GRGCYC 3 cut(s) 285, 978, 1096
Eco47I GGWCC 2 cut(s) 302, 1182
Eco52I CGGCCG 1 cut(s) 1039
Eco53kI GAGCTC 1 cut(s) 976
Eco57I CTGAAG 1 cut(s) 440
Eco88I CYCGRG 1 cut(s) 1014
EcoICRI GAGCTC 1 cut(s) 976
EcoNI CCTNNNNNAGG 1 cut(s) 1170
EcoT14I CCWWGG 1 cut(s) 1081
EcoT38I GRGCYC 3 cut(s) 285, 978, 1096
EgeI GGCGCC 1 cut(s) 368
EheI GGCGCC 1 cut(s) 368
ErhI CCWWGG 1 cut(s) 1081
FaeI CATG 5 cut(s) 256, 392, 728, 800, 833
FaiI YATR 9 cut(s) 20, 224, 254, 358, 390, 557, 726, 798, 831
FalI AAGNNNNNCTT 8 cut(s) 76, 108, 703, 735, 808, 840, 1188, 1220
FaqI GGGAC 1 cut(s) 584
FatI CATG 5 cut(s) 252, 388, 724, 796, 829
FbaI TGATCA 1 cut(s) 648
FokI GGATG 4 cut(s) 413, 634, 1098, 1200
FriOI GRGCYC 3 cut(s) 285, 978, 1096
FspBI CTAG 5 cut(s) 246, 477, 761, 1025, 1128
FspI TGCGCA 1 cut(s) 686
GlaI GCGC 4 cut(s) 368, 638, 686, 930
GsuI CTGGAG 1 cut(s) 191
HaeII RGCGCY 2 cut(s) 370, 932
HaeIII GGCC 4 cut(s) 986, 1021, 1041, 1080
HapII CCGG 4 cut(s) 640, 899, 987, 1185
HgaI GACGC 1 cut(s) 1033
HhaI GCGC 4 cut(s) 369, 639, 687, 931
Hin1I GRCGYC 1 cut(s) 367
Hin1II CATG 5 cut(s) 256, 392, 728, 800, 833
Hin6I GCGC 4 cut(s) 367, 637, 685, 929
HinP1I GCGC 4 cut(s) 367, 637, 685, 929
HincII GTYRAC 1 cut(s) 1160
HindII GTYRAC 1 cut(s) 1160
HindIII AAGCTT 2 cut(s) 344, 503
HinfI GANTC 5 cut(s) 256, 572, 958, 990, 1111
HpaII CCGG 4 cut(s) 640, 899, 987, 1185
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 2 cut(s) 265, 1160
Hpy188I TCNGA 4 cut(s) 493, 586, 807, 1001
Hpy188III TCNNGA 6 cut(s) 80, 725, 830, 872, 899, 1185
Hpy8I GTNNAC 2 cut(s) 265, 1160
Hpy99I CGWCG 1 cut(s) 1049
HpyAV CCTTC 5 cut(s) 63, 265, 421, 442, 776
HpyCH4III ACNGT 2 cut(s) 887, 919
HpyF10VI GCNNNNNNNGC 5 cut(s) 449, 787, 858, 943, 952
HpyF3I CTNAG 2 cut(s) 506, 566
Hsp92I GRCGYC 1 cut(s) 367
Hsp92II CATG 5 cut(s) 256, 392, 728, 800, 833
HspAI GCGC 4 cut(s) 367, 637, 685, 929
KasI GGCGCC 1 cut(s) 366
Kpn2I TCCGGA 2 cut(s) 898, 1184
Ksp22I TGATCA 1 cut(s) 648
KspI CCGCGG 1 cut(s) 935
Kzo9I GATC 5 cut(s) 193, 391, 648, 874, 1006
LguI GCTCTTC 1 cut(s) 159
LmnI GCTCC 3 cut(s) 480, 911, 1099
Lsp1109I GCAGC 7 cut(s) 159, 470, 522, 864, 867, 870, 1144
LweI GCATC 4 cut(s) 106, 430, 522, 612
MaeI CTAG 5 cut(s) 246, 477, 761, 1025, 1128
MalI GATC 5 cut(s) 195, 393, 650, 876, 1008
MboI GATC 5 cut(s) 193, 391, 648, 874, 1006
MboII GAAGA 5 cut(s) 61, 176, 433, 436, 457
MfeI CAATTG 3 cut(s) 61, 735, 840
MflI RGATCY 1 cut(s) 1006
MhlI GDGCHC 4 cut(s) 285, 597, 978, 1096
MluCI AATT 9 cut(s) 21, 61, 461, 689, 735, 741, 749, 840, 846
Mly113I GGCGCC 1 cut(s) 367
MlyI GAGTC 4 cut(s) 265, 566, 999, 1120
MmeI TCCRAC 2 cut(s) 378, 653
MroI TCCGGA 2 cut(s) 898, 1184
MseI TTAA 3 cut(s) 38, 183, 348
MspA1I CMGCKG 2 cut(s) 700, 934
MspCI CTTAAG 1 cut(s) 347
MspI CCGG 4 cut(s) 640, 899, 987, 1185
MspR9I CCNGG 1 cut(s) 641
MunI CAATTG 3 cut(s) 61, 735, 840
MvnI CGCG 2 cut(s) 934, 1044
MwoI GCNNNNNNNGC 5 cut(s) 449, 787, 858, 943, 952
NarI GGCGCC 1 cut(s) 367
NciI CCSGG 1 cut(s) 641
NdeII GATC 5 cut(s) 193, 391, 648, 874, 1006
NlaIII CATG 5 cut(s) 256, 392, 728, 800, 833
NlaIV GGNNCC 3 cut(s) 243, 368, 1095
NmeAIII GCCGAG 1 cut(s) 1056
NsbI TGCGCA 1 cut(s) 686
PaeR7I CTCGAG 1 cut(s) 1014
PagI TCATGA 2 cut(s) 724, 829
PciSI GCTCTTC 1 cut(s) 159
PfeI GAWTC 1 cut(s) 958
PleI GAGTC 4 cut(s) 264, 566, 998, 1119
PluTI GGCGCC 1 cut(s) 370
PpsI GAGTC 4 cut(s) 264, 566, 998, 1119
PsiI TTATAA 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 978
PspN4I GGNNCC 3 cut(s) 243, 368, 1095
PspPI GGNCC 3 cut(s) 302, 1019, 1182
PspXI VCTCGAGB 1 cut(s) 1014
PsuI RGATCY 1 cut(s) 1006
PvuII CAGCTG 1 cut(s) 700
RsaI GTAC 6 cut(s) 97, 214, 916, 921, 969, 1209
RsaNI GTAC 6 cut(s) 96, 213, 915, 920, 968, 1208
SacI GAGCTC 1 cut(s) 978
SacII CCGCGG 1 cut(s) 935
SapI GCTCTTC 1 cut(s) 159
SaqAI TTAA 3 cut(s) 38, 183, 348
Sau3AI GATC 5 cut(s) 193, 391, 648, 874, 1006
Sau96I GGNCC 3 cut(s) 302, 1019, 1182
ScaI AGTACT 2 cut(s) 214, 921
SchI GAGTC 4 cut(s) 265, 566, 999, 1120
ScrFI CCNGG 1 cut(s) 641
SduI GDGCHC 4 cut(s) 285, 597, 978, 1096
SfaNI GCATC 4 cut(s) 106, 430, 522, 612
SfcI CTRYAG 1 cut(s) 189
SfoI GGCGCC 1 cut(s) 368
Sfr274I CTCGAG 1 cut(s) 1014
Sfr303I CCGCGG 1 cut(s) 935
SgrBI CCGCGG 1 cut(s) 935
SinI GGWCC 2 cut(s) 302, 1182
SlaI CTCGAG 1 cut(s) 1014
SmlI CTYRAG 3 cut(s) 347, 977, 1014
SmoI CTYRAG 3 cut(s) 347, 977, 1014
Sse9I AATT 9 cut(s) 21, 61, 461, 689, 735, 741, 749, 840, 846
SsiI CCGC 6 cut(s) 431, 473, 782, 932, 934, 1042
SspDI GGCGCC 1 cut(s) 366
SspMI CTAG 5 cut(s) 246, 477, 761, 1025, 1128
SstI GAGCTC 1 cut(s) 978
StyD4I CCNGG 1 cut(s) 639
StyI CCWWGG 1 cut(s) 1081
TaaI ACNGT 2 cut(s) 887, 919
TaqI TCGA 2 cut(s) 657, 1015
TaqII GACCGA 2 cut(s) 290, 824
TasI AATT 9 cut(s) 21, 61, 461, 689, 735, 741, 749, 840, 846
TatI WGTACW 6 cut(s) 95, 212, 914, 919, 967, 1207
TauI GCSGC 5 cut(s) 476, 784, 934, 937, 1044
TfiI GAWTC 1 cut(s) 958
Tru1I TTAA 3 cut(s) 38, 183, 348
Tru9I TTAA 3 cut(s) 38, 183, 348
TseI GCWGC 7 cut(s) 147, 483, 510, 852, 855, 858, 1132
TspDTI ATGAA 2 cut(s) 420, 541
TspGWI ACGGA 2 cut(s) 330, 1123
Vha464I CTTAAG 1 cut(s) 347
VpaK11BI GGWCC 2 cut(s) 302, 1182
XagI CCTNNNNNAGG 1 cut(s) 1170
XcmI CCANNNNNNNNNTGG 2 cut(s) 137, 741
XhoI CTCGAG 1 cut(s) 1014
XspI CTAG 5 cut(s) 246, 477, 761, 1025, 1128
ZrmI AGTACT 2 cut(s) 214, 921
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.