RchiOBHm_Chr2g0150221

Rhamnogalacturonate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014774
Physical Location & Seq
Forward (+)
67935587 .. 67935826
240 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 240 bp
ATGGTTTTCAAGCTTCAACAAGCCAAGTTCTGGTACATGGCACTATCGGACACTAGACAAAGGTTCATGCCAACAGCCTATGAACGTGGATATTATGGTATGAAACTCGCCTACAAAGAATTTGTTCTCCTAAACAATACAAGAGAGGTAGATGACAAGTATCAGTACTCAATTGAGGACAAGGATAACAAGGTGCATGGTTGGATTTGTACCGATGATGAATCACATGTTGGGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

79

Amino Acids

9.56

Weight (kDa)

6.06

Isoelectric Point (pI)

32.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 1 - 49 3.1e-11 Rhamnogalacturonate lyase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 30
AcsI RAATTY 1 cut(s) 119
AfaI GTAC 3 cut(s) 35, 167, 211
AfiI CCNNNNNNNGG 1 cut(s) 30
AflIII ACRYGT 1 cut(s) 226
AgsI TTSAA 2 cut(s) 10, 17
AjuI GAANNNNNNNTTGG 1 cut(s) 213
AluBI AGCT 1 cut(s) 13
AluI AGCT 1 cut(s) 13
ApoI RAATTY 1 cut(s) 119
Asp700I GAANNNNTTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 167
Bsc4I CCNNNNNNNGG 1 cut(s) 30
BseLI CCNNNNNNNGG 1 cut(s) 30
BslI CCNNNNNNNGG 1 cut(s) 30
BstNSI RCATGY 1 cut(s) 230
Csp6I GTAC 3 cut(s) 34, 166, 210
CviAII CATG 4 cut(s) 37, 67, 197, 227
CviJI RGCY 3 cut(s) 13, 23, 77
CviKI_1 RGCY 3 cut(s) 13, 23, 77
CviQI GTAC 3 cut(s) 34, 166, 210
FaeI CATG 4 cut(s) 40, 70, 200, 230
FaiI YATR 7 cut(s) 38, 68, 81, 96, 101, 198, 228
FatI CATG 4 cut(s) 36, 66, 196, 226
FspBI CTAG 1 cut(s) 54
Hin1II CATG 4 cut(s) 40, 70, 200, 230
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 1 cut(s) 221
Hpy188I TCNGA 1 cut(s) 49
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 1 cut(s) 196
HpySE526I ACGT 1 cut(s) 85
Hsp92II CATG 4 cut(s) 40, 70, 200, 230
LpnPI CCDG 1 cut(s) 16
MaeI CTAG 1 cut(s) 54
MaeII ACGT 1 cut(s) 85
MfeI CAATTG 1 cut(s) 171
MluCI AATT 2 cut(s) 119, 171
MmeI TCCRAC 1 cut(s) 182
MnlI CCTC 2 cut(s) 139, 169
MroXI GAANNNNTTC 1 cut(s) 123
MunI CAATTG 1 cut(s) 171
NlaIII CATG 4 cut(s) 40, 70, 200, 230
NspI RCATGY 1 cut(s) 230
PciI ACATGT 1 cut(s) 226
PdmI GAANNNNTTC 1 cut(s) 123
PfeI GAWTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 30
PscI ACATGT 1 cut(s) 226
RsaI GTAC 3 cut(s) 35, 167, 211
RsaNI GTAC 3 cut(s) 34, 166, 210
ScaI AGTACT 1 cut(s) 167
SetI ASST 5 cut(s) 15, 65, 88, 150, 195
Sse9I AATT 2 cut(s) 119, 171
SspMI CTAG 1 cut(s) 54
TaiI ACGT 1 cut(s) 88
TasI AATT 2 cut(s) 119, 171
TatI WGTACW 1 cut(s) 165
TfiI GAWTC 1 cut(s) 221
TspDTI ATGAA 4 cut(s) 55, 96, 116, 234
Van91I CCANNNNNTGG 1 cut(s) 30
XapI RAATTY 1 cut(s) 119
XceI RCATGY 1 cut(s) 230
XmnI GAANNNNTTC 1 cut(s) 123
XspI CTAG 1 cut(s) 54
ZrmI AGTACT 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.