Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8045638.1

Orthogroup ID

OG0014774

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 557

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8045638.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

tcttgaagggtggccgggaggggacatggagacacttagagtggcttacaagcttcatcaagccaagtttaaatatatggcggtatcggacactacgcaaaggtttatgccaacagccgattaccgagcacgcggtaagccacttgcattcaaagaagctgttctactgaacaatgagacgagcagtcctgaatttgaaggggaggtggatgataagtatcagtactcggccgaggacaaagatatcaaggtgcatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

86

Amino Acids

9.82

Weight (kDa)

5.31

Isoelectric Point (pI)

16.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014774)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37410
malus_domestica	MD02G1298700.v1.1 MD02G1298900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0088441 RchiOBHm_Chr2g0150211 RchiOBHm_Chr2g0150221
rosa_laevigata	RLG00000015955 RLG00000020479
rosa_multiflora	Rmu_co8045638.1_g000001 Rmu_co8440155.1_g000001 Rmu_sc0004733.1_g000016 Rmu_sc0037686.1_g000001 Rmu_ssc0000020.1_g000007
rosa_roxburghii	Rroxscaffold_2G00097360
rosa_samantha	Rh2BG491200 Rh2CG039200 Rh2DG500000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	133
AciI	CCGC	2 cut(s)	81, 133
AcoI	YGGCCR	2 cut(s)	12, 229
AcsI	RAATTY	1 cut(s)	192
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	3 cut(s)	6, 152, 198
AhdI	GACNNNNNGTC	1 cut(s)	184
AluBI	AGCT	2 cut(s)	53, 159
AluI	AGCT	2 cut(s)	53, 159
Alw21I	GWGCWC	1 cut(s)	131
Alw26I	GTCTC	2 cut(s)	24, 171
AoxI	GGCC	2 cut(s)	12, 229
ApoI	RAATTY	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	160
AsuC2I	CCSGG	1 cut(s)	16
BarI	GAAGNNNNNNTAC	2 cut(s)	148, 180
Bbv12I	GWGCWC	1 cut(s)	131
BcnI	CCSGG	1 cut(s)	16
BcoDI	GTCTC	2 cut(s)	24, 171
BmcAI	AGTACT	1 cut(s)	225
Bme1390I	CCNGG	1 cut(s)	16
BmeRI	GACNNNNNGTC	1 cut(s)	184
BmrFI	CCNGG	1 cut(s)	16
BpuMI	CCSGG	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	217
BsaJI	CCNNGG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	217
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	1 cut(s)	215
BseJI	GATNNNNATC	1 cut(s)	217
BseX3I	CGGCCG	1 cut(s)	229
Bsh1236I	CGCG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	2 cut(s)	14, 231
BsiEI	CGRYCG	1 cut(s)	232
BsiHKAI	GWGCWC	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	15
BslFI	GGGAC	1 cut(s)	36
BsmAI	GTCTC	2 cut(s)	24, 171
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	36
BsmI	GAATGC	1 cut(s)	147
BsnI	GGCC	2 cut(s)	14, 231
Bsp1286I	GDGCHC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	81, 133
BspANI	GGCC	2 cut(s)	14, 231
BspFNI	CGCG	1 cut(s)	133
BssECI	CCNNGG	1 cut(s)	232
BstC8I	GCNNGC	1 cut(s)	131
BstDEI	CTNAG	1 cut(s)	36
BstF5I	GGATG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	133
BstMAI	GTCTC	2 cut(s)	24, 171
BstMCI	CGRYCG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	14
BstUI	CGCG	1 cut(s)	133
BstZI	CGGCCG	1 cut(s)	229
BsuRI	GGCC	2 cut(s)	14, 231
BtsCI	GGATG	1 cut(s)	215
Cac8I	GCNNGC	1 cut(s)	131
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	2 cut(s)	26, 255
CviJI	RGCY	8 cut(s)	14, 45, 53, 63, 117, 140, 159, 231
CviKI_1	RGCY	8 cut(s)	14, 45, 53, 63, 117, 140, 159, 231
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	1 cut(s)	36
DraI	TTTAAA	1 cut(s)	71
DriI	GACNNNNNGTC	1 cut(s)	184
EaeI	YGGCCR	2 cut(s)	12, 229
EagI	CGGCCG	1 cut(s)	229
Eam1105I	GACNNNNNGTC	1 cut(s)	184
EclXI	CGGCCG	1 cut(s)	229
Eco32I	GATATC	1 cut(s)	245
Eco52I	CGGCCG	1 cut(s)	229
EcoRV	GATATC	1 cut(s)	245
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	2 cut(s)	29, 258
FaiI	YATR	5 cut(s)	27, 76, 78, 108, 256
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	2 cut(s)	25, 254
FokI	GGATG	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	14, 231
HapII	CCGG	1 cut(s)	15
Hin1II	CATG	2 cut(s)	29, 258
HindIII	AAGCTT	1 cut(s)	51
HpaII	CCGG	1 cut(s)	15
Hpy188I	TCNGA	1 cut(s)	89
Hpy188III	TCNNGA	2 cut(s)	3, 189
HpyAV	CCTTC	1 cut(s)	192
HpyCH4V	TGCA	2 cut(s)	147, 254
HpyF3I	CTNAG	1 cut(s)	36
Hsp92II	CATG	2 cut(s)	29, 258
LpnPI	CCDG	2 cut(s)	28, 202
MhlI	GDGCHC	1 cut(s)	131
MluCI	AATT	1 cut(s)	192
MnlI	CCTC	3 cut(s)	12, 197, 227
MroXI	GAANNNNTTC	1 cut(s)	160
MseI	TTAA	1 cut(s)	70
MspI	CCGG	1 cut(s)	15
MspR9I	CCNGG	1 cut(s)	16
Mva1269I	GAATGC	1 cut(s)	147
MvnI	CGCG	1 cut(s)	133
NciI	CCSGG	1 cut(s)	16
NlaIII	CATG	2 cut(s)	29, 258
NmeAIII	GCCGAG	2 cut(s)	207, 257
PctI	GAATGC	1 cut(s)	147
PdmI	GAANNNNTTC	1 cut(s)	160
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	70
ScaI	AGTACT	1 cut(s)	225
ScrFI	CCNGG	1 cut(s)	16
SduI	GDGCHC	1 cut(s)	131
SetI	ASST	5 cut(s)	55, 105, 161, 208, 253
Sse9I	AATT	1 cut(s)	192
SsiI	CCGC	2 cut(s)	81, 133
StyD4I	CCNGG	1 cut(s)	14
TasI	AATT	1 cut(s)	192
TatI	WGTACW	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	70
Tru9I	TTAA	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	45
XapI	RAATTY	1 cut(s)	192
XmnI	GAANNNNTTC	1 cut(s)	160
ZrmI	AGTACT	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.