Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004733.1

Orthogroup ID

OG0014774

Physical Location & Seq

Genomic Coordinates Reverse (-)

84405 .. 86322

Gene Structure 1918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004733.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

atggagacacttagagtggcttacaagcttcatcaagccaagtttaaatatatggcggtatcggacactacgcaaaggtttatgccaacagccgattaccgagcacgcggtaagccacttgcattcaaagaagctgttctactgaacaatgagacgagcagtcctgaatttgaaggggaggtggatgataagtatcagtactcggccgaggacaaagatatcaaggtgcatggttggatttctattgatgaccaatcaccaccggtgggattttggatgatcacacctagtgttgagtttcgtatgggtggtcctttcaagcaggacctcacctctcacgttggaccaacttgcctaactgggtttgcttctcatcattatgttggtaaagaagttgggctgacattccaagagggtgaggtatggaaaaaggttttcggacctgtctttatctatcttaactcgacagcacgaaactcagataatagtccttcaacgatccgtacactatggaacaatgccaaagatcaaatgcttgaagaagtcaaaagttggccatacaatttcattagttctcacgactttccttcttcagatcaacgtggatcagtttcgggccagttactagtacatgatcgatacactgaaagtcttccaaggacaagtttggcttacgtaggattggctgcacccggagaagttggatcatggcaaagggagagcaagggataccaattttggactcaaaccgatgaaaaaggctatttcctcattgaaaatattagacccgaacttcgatacaatatgtttagtgttgtctcctttgatgaaattcatctttatctgctccatgtaagcagcattatcctcgtagataatggttggttcatcagtggtggaatgcagttccacatgtgcttcgaacatgctttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

311

Amino Acids

35.58

Weight (kDa)

5.66

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014774)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g37410
malus_domestica	MD02G1298700.v1.1 MD02G1298900.v1.1
rosa_chinensis	RchiOBHm_Chr2g0088441 RchiOBHm_Chr2g0150211 RchiOBHm_Chr2g0150221
rosa_laevigata	RLG00000015955 RLG00000020479
rosa_multiflora	Rmu_co8045638.1_g000001 Rmu_co8440155.1_g000001 Rmu_sc0004733.1_g000016 Rmu_sc0037686.1_g000001 Rmu_ssc0000020.1_g000007
rosa_roxburghii	Rroxscaffold_2G00097360
rosa_samantha	Rh2BG491200 Rh2CG039200 Rh2DG500000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	108
AciI	CCGC	2 cut(s)	56, 108
AclWI	GGATC	3 cut(s)	493, 613, 712
AcoI	YGGCCR	2 cut(s)	204, 554
AcsI	RAATTY	2 cut(s)	167, 831
AcuI	CTGAAG	1 cut(s)	576
AdeI	CACNNNGTG	1 cut(s)	290
AfaI	GTAC	3 cut(s)	200, 505, 630
AfiI	CCNNNNNNNGG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	912
AgeI	ACCGGT	1 cut(s)	262
AgsI	TTSAA	6 cut(s)	127, 173, 319, 495, 539, 776
AhdI	GACNNNNNGTC	1 cut(s)	159
AhlI	ACTAGT	1 cut(s)	625
AluBI	AGCT	2 cut(s)	28, 134
AluI	AGCT	2 cut(s)	28, 134
Alw21I	GWGCWC	1 cut(s)	106
Alw26I	GTCTC	2 cut(s)	146, 823
AlwI	GGATC	3 cut(s)	493, 613, 712
AoxI	GGCC	3 cut(s)	204, 554, 616
ApeKI	GCWGC	2 cut(s)	686, 858
ApoI	RAATTY	2 cut(s)	167, 831
ArsI	GACNNNNNNTTYG	2 cut(s)	777, 809
AsiGI	ACCGGT	1 cut(s)	262
Asp700I	GAANNNNTTC	2 cut(s)	135, 651
AspS9I	GGNCC	5 cut(s)	311, 325, 344, 440, 616
AsuC2I	CCSGG	1 cut(s)	693
AsuHPI	GGTGA	3 cut(s)	249, 322, 428
AsuII	TTCGAA	1 cut(s)	921
AvaII	GGWCC	4 cut(s)	311, 325, 344, 440
BalI	TGGCCA	1 cut(s)	556
BarI	GAAGNNNNNNTAC	2 cut(s)	123, 155
BbsI	GAAGAC	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	106
BbvI	GCAGC	2 cut(s)	673, 870
BcgI	CGANNNNNNTGC	2 cut(s)	850, 884
BciVI	GTATCC	1 cut(s)	722
BclI	TGATCA	1 cut(s)	279
BcnI	CCSGG	1 cut(s)	693
BcoDI	GTCTC	2 cut(s)	146, 823
BcuI	ACTAGT	1 cut(s)	625
BfaI	CTAG	2 cut(s)	288, 626
BfuI	GTATCC	1 cut(s)	722
BisI	GCNGC	2 cut(s)	687, 859
BlsI	GCNGC	2 cut(s)	688, 860
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	693
Bme18I	GGWCC	4 cut(s)	311, 325, 344, 440
BmeRI	GACNNNNNGTC	1 cut(s)	159
BmgT120I	GGNCC	5 cut(s)	311, 325, 344, 440, 616
BmrFI	CCNGG	1 cut(s)	693
BmrI	ACTGGG	1 cut(s)	369
BmuI	ACTGGG	1 cut(s)	369
BpiI	GAAGAC	1 cut(s)	644
Bpu14I	TTCGAA	1 cut(s)	921
BpuMI	CCSGG	1 cut(s)	693
Bsa29I	ATCGAT	1 cut(s)	637
BsaAI	YACGTR	1 cut(s)	676
BsaBI	GATNNNNATC	1 cut(s)	192
BsaJI	CCNNGG	2 cut(s)	207, 656
BsaWI	WCCGGW	1 cut(s)	262
Bsc4I	CCNNNNNNNGG	1 cut(s)	266
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	2 cut(s)	364, 619
Bse8I	GATNNNNATC	1 cut(s)	192
BseCI	ATCGAT	1 cut(s)	637
BseDI	CCNNGG	2 cut(s)	207, 656
BseGI	GGATG	2 cut(s)	190, 282
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	1 cut(s)	266
BseMII	CTCAG	1 cut(s)	492
BseNI	ACTGG	2 cut(s)	364, 619
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	2 cut(s)	673, 870
BsgI	GTGCAG	1 cut(s)	672
Bsh1236I	CGCG	1 cut(s)	108
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	3 cut(s)	206, 556, 618
BshTI	ACCGGT	1 cut(s)	262
BshVI	ATCGAT	1 cut(s)	637
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	106
BsiSI	CCGG	2 cut(s)	263, 693
BslI	CCNNNNNNNGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	146, 823
BsmBI	CGTCTC	1 cut(s)	146
BsmI	GAATGC	2 cut(s)	122, 906
BsnI	GGCC	3 cut(s)	206, 556, 618
Bsp119I	TTCGAA	1 cut(s)	921
Bsp1286I	GDGCHC	1 cut(s)	106
Bsp143I	GATC	7 cut(s)	279, 498, 526, 595, 605, 634, 704
BspACI	CCGC	2 cut(s)	56, 108
BspANI	GGCC	3 cut(s)	206, 556, 618
BspCNI	CTCAG	1 cut(s)	491
BspDI	ATCGAT	1 cut(s)	637
BspFNI	CGCG	1 cut(s)	108
BspPI	GGATC	3 cut(s)	493, 613, 712
BspT104I	TTCGAA	1 cut(s)	921
BsrFI	RCCGGY	1 cut(s)	262
BsrI	ACTGG	2 cut(s)	364, 619
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	207, 656
BssMI	GATC	7 cut(s)	279, 498, 526, 595, 605, 634, 704
BssT1I	CCWWGG	1 cut(s)	656
BstBAI	YACGTR	1 cut(s)	676
BstBI	TTCGAA	1 cut(s)	921
BstC8I	GCNNGC	1 cut(s)	106
BstDEI	CTNAG	2 cut(s)	11, 478
BstF5I	GGATG	2 cut(s)	190, 282
BstFNI	CGCG	1 cut(s)	108
BstKTI	GATC	7 cut(s)	282, 501, 529, 598, 608, 637, 707
BstMAI	GTCTC	2 cut(s)	146, 823
BstMBI	GATC	7 cut(s)	279, 498, 526, 595, 605, 634, 704
BstMCI	CGRYCG	1 cut(s)	207
BstNSI	RCATGY	2 cut(s)	916, 929
BstSCI	CCNGG	1 cut(s)	691
BstSNI	TACGTA	1 cut(s)	676
BstUI	CGCG	1 cut(s)	108
BstV1I	GCAGC	2 cut(s)	673, 870
BstV2I	GAAGAC	1 cut(s)	644
BstZI	CGGCCG	1 cut(s)	204
Bsu15I	ATCGAT	1 cut(s)	637
BsuI	GTATCC	1 cut(s)	722
BsuRI	GGCC	3 cut(s)	206, 556, 618
BsuTUI	ATCGAT	1 cut(s)	637
BtsCI	GGATG	2 cut(s)	190, 282
BtsIMutI	CAGTG	2 cut(s)	642, 898
Cac8I	GCNNGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	5 cut(s)	311, 325, 344, 440, 616
ClaI	ATCGAT	1 cut(s)	637
Csp6I	GTAC	3 cut(s)	199, 504, 629
CspAI	ACCGGT	1 cut(s)	262
CviAII	CATG	6 cut(s)	230, 632, 708, 851, 913, 926
CviQI	GTAC	3 cut(s)	199, 504, 629
DdeI	CTNAG	2 cut(s)	11, 478
DpnI	GATC	7 cut(s)	281, 500, 528, 597, 607, 636, 706
DpnII	GATC	7 cut(s)	279, 498, 526, 595, 605, 634, 704
DraI	TTTAAA	1 cut(s)	46
DraIII	CACNNNGTG	1 cut(s)	290
DriI	GACNNNNNGTC	1 cut(s)	159
EaeI	YGGCCR	2 cut(s)	204, 554
EagI	CGGCCG	1 cut(s)	204
Eam1105I	GACNNNNNGTC	1 cut(s)	159
EclXI	CGGCCG	1 cut(s)	204
Eco105I	TACGTA	1 cut(s)	676
Eco130I	CCWWGG	1 cut(s)	656
Eco32I	GATATC	1 cut(s)	220
Eco47I	GGWCC	4 cut(s)	311, 325, 344, 440
Eco52I	CGGCCG	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	576
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRV	GATATC	1 cut(s)	220
EcoT14I	CCWWGG	1 cut(s)	656
ErhI	CCWWGG	1 cut(s)	656
Esp3I	CGTCTC	1 cut(s)	146
FaeI	CATG	6 cut(s)	233, 635, 711, 854, 916, 929
FalI	AAGNNNNNCTT	2 cut(s)	655, 687
FatI	CATG	6 cut(s)	229, 631, 707, 850, 912, 925
FbaI	TGATCA	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	687, 859
FokI	GGATG	2 cut(s)	197, 289
Fsp4HI	GCNGC	2 cut(s)	687, 859
FspBI	CTAG	2 cut(s)	288, 626
GluI	GCNGC	2 cut(s)	687, 859
HaeIII	GGCC	3 cut(s)	206, 556, 618
HapII	CCGG	2 cut(s)	263, 693
Hin1II	CATG	6 cut(s)	233, 635, 711, 854, 916, 929
HindIII	AAGCTT	1 cut(s)	26
HinfI	GANTC	1 cut(s)	742
HpaII	CCGG	2 cut(s)	263, 693
HphI	GGTGA	3 cut(s)	249, 322, 428
Hpy166II	GTNNAC	1 cut(s)	506
Hpy188I	TCNGA	4 cut(s)	64, 440, 481, 595
Hpy188III	TCNNGA	2 cut(s)	164, 578
Hpy8I	GTNNAC	1 cut(s)	506
HpyAV	CCTTC	3 cut(s)	167, 501, 597
HpyCH4IV	ACGT	3 cut(s)	339, 601, 675
HpyCH4V	TGCA	4 cut(s)	122, 229, 689, 904
HpyF3I	CTNAG	2 cut(s)	11, 478
HpySE526I	ACGT	3 cut(s)	339, 601, 675
Hsp92II	CATG	6 cut(s)	233, 635, 711, 854, 916, 929
Ksp22I	TGATCA	1 cut(s)	279
Kzo9I	GATC	7 cut(s)	279, 498, 526, 595, 605, 634, 704
LmnI	GCTCC	1 cut(s)	852
LpnPI	CCDG	7 cut(s)	177, 276, 308, 345, 456, 632, 706
Lsp1109I	GCAGC	2 cut(s)	673, 870
MaeI	CTAG	2 cut(s)	288, 626
MaeII	ACGT	3 cut(s)	339, 601, 675
MaeIII	GTNAC	1 cut(s)	621
MalI	GATC	7 cut(s)	281, 500, 528, 597, 607, 636, 706
MboI	GATC	7 cut(s)	279, 498, 526, 595, 605, 634, 704
MboII	GAAGA	3 cut(s)	551, 582, 644
MhlI	GDGCHC	1 cut(s)	106
MlsI	TGGCCA	1 cut(s)	556
MluCI	AATT	4 cut(s)	167, 562, 734, 831
MluNI	TGGCCA	1 cut(s)	556
MlyI	GAGTC	1 cut(s)	736
MmeI	TCCRAC	3 cut(s)	215, 322, 682
MnlI	CCTC	8 cut(s)	172, 202, 338, 343, 406, 412, 779, 878
Mox20I	TGGCCA	1 cut(s)	556
MroXI	GAANNNNTTC	2 cut(s)	135, 651
MscI	TGGCCA	1 cut(s)	556
MseI	TTAA	2 cut(s)	45, 459
MslI	CAYNNNNRTG	1 cut(s)	378
Msp20I	TGGCCA	1 cut(s)	556
MspI	CCGG	2 cut(s)	263, 693
MspR9I	CCNGG	1 cut(s)	693
Mva1269I	GAATGC	2 cut(s)	122, 906
MvnI	CGCG	1 cut(s)	108
NciI	CCSGG	1 cut(s)	693
NdeII	GATC	7 cut(s)	279, 498, 526, 595, 605, 634, 704
NlaIII	CATG	6 cut(s)	233, 635, 711, 854, 916, 929
NmeAIII	GCCGAG	2 cut(s)	182, 232
NspI	RCATGY	2 cut(s)	916, 929
NspV	TTCGAA	1 cut(s)	921
PciI	ACATGT	1 cut(s)	912
PctI	GAATGC	2 cut(s)	122, 906
PdmI	GAANNNNTTC	2 cut(s)	135, 651
PinAI	ACCGGT	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	688, 860
PleI	GAGTC	1 cut(s)	736
PpsI	GAGTC	1 cut(s)	736
Ppu21I	YACGTR	1 cut(s)	676
PpuMI	RGGWCCY	1 cut(s)	325
PscI	ACATGT	1 cut(s)	912
Psp5II	RGGWCCY	1 cut(s)	325
PspPI	GGNCC	5 cut(s)	311, 325, 344, 440, 616
PspPPI	RGGWCCY	1 cut(s)	325
RsaI	GTAC	3 cut(s)	200, 505, 630
RsaNI	GTAC	3 cut(s)	199, 504, 629
RseI	CAYNNNNRTG	1 cut(s)	378
SaqAI	TTAA	2 cut(s)	45, 459
SatI	GCNGC	2 cut(s)	687, 859
Sau3AI	GATC	7 cut(s)	279, 498, 526, 595, 605, 634, 704
Sau96I	GGNCC	5 cut(s)	311, 325, 344, 440, 616
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	1 cut(s)	693
SduI	GDGCHC	1 cut(s)	106
SfuI	TTCGAA	1 cut(s)	921
SgrAI	CRCCGGYG	1 cut(s)	262
SinI	GGWCC	4 cut(s)	311, 325, 344, 440
SmiMI	CAYNNNNRTG	1 cut(s)	378
SnaBI	TACGTA	1 cut(s)	676
SpeI	ACTAGT	1 cut(s)	625
Sse9I	AATT	4 cut(s)	167, 562, 734, 831
SsiI	CCGC	2 cut(s)	56, 108
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	2 cut(s)	288, 626
StyD4I	CCNGG	1 cut(s)	691
StyI	CCWWGG	1 cut(s)	656
TaiI	ACGT	3 cut(s)	342, 604, 678
TaqI	TCGA	4 cut(s)	464, 637, 796, 921
TasI	AATT	4 cut(s)	167, 562, 734, 831
TatI	WGTACW	2 cut(s)	198, 628
Tru1I	TTAA	2 cut(s)	45, 459
Tru9I	TTAA	2 cut(s)	45, 459
TscAI	CASTG	2 cut(s)	649, 898
TseI	GCWGC	2 cut(s)	686, 858
TspDTI	ATGAA	6 cut(s)	20, 556, 768, 824, 843, 877
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	2 cut(s)	649, 898
VpaK11BI	GGWCC	4 cut(s)	311, 325, 344, 440
XapI	RAATTY	2 cut(s)	167, 831
XceI	RCATGY	2 cut(s)	916, 929
XmnI	GAANNNNTTC	2 cut(s)	135, 651
XspI	CTAG	2 cut(s)	288, 626
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.