RchiOBHm_Chr2g0150211

Rhamnogalacturonate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014774
Physical Location & Seq
Forward (+)
67935032 .. 67935460
429 bp
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UTR
Exon/CDS
Intron
PRQ51956

Sequence Viewer

Length: 429 bp
ATGAGGCAATGGGGTTGGCTTCTTGGGACACTAACAATGCTGCTGGTTCTGGTTTTTCTCTTGGTTGGTTTTGGATTTGACACCAGCACCCCAACAAAAAGATCATTGCGGAGTGATTCTGGACGACATTATAGGGTGAAGATGGTAAATACATCTGACAGCATTGTGTTGGATAATGGCCTTGTCCAACTAACGTTCTCTAATCCCGCTGGCGACGTTATTGGAATCAGATATGGGGGAATTGATAACTTGCTTGAAATCCACAATAAGCCAACTAATAGAGGTTACTGCGATTTGAACTGGAACAATCTGGGAGAGAAGAGCAGTATCTTTGAACGAGTATTGGGAACAGAATTTCGAGTGATCACAGCTACGGAAGACCAAATAGAAATCTCTTTCACCAGAACATACAATGTTTCCCTTCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

142

Amino Acids

16.02

Weight (kDa)

6.72

Isoelectric Point (pI)

40.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 40 - 141 1.9e-32 Rhamnogalacturonate lyase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 109, 207
AclI AACGTT 1 cut(s) 194
AcsI RAATTY 1 cut(s) 353
AgsI TTSAA 3 cut(s) 257, 298, 335
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
AoxI GGCC 1 cut(s) 178
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 1 cut(s) 353
AsuHPI GGTGA 2 cut(s) 148, 391
BbsI GAAGAC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 27
BccI CCATC 1 cut(s) 136
BclI TGATCA 1 cut(s) 363
BfaI CTAG 1 cut(s) 427
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 384
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 2 cut(s) 14, 104
BseMI GCAATG 2 cut(s) 14, 104
BseNI ACTGG 1 cut(s) 305
BseXI GCAGC 1 cut(s) 27
BshFI GGCC 1 cut(s) 180
BslFI GGGAC 1 cut(s) 40
BsmFI GGGAC 1 cut(s) 40
BsnI GGCC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 101, 363
BspACI CCGC 2 cut(s) 109, 207
BspANI GGCC 1 cut(s) 180
BspQI GCTCTTC 1 cut(s) 314
BsrDI GCAATG 2 cut(s) 14, 104
BsrI ACTGG 1 cut(s) 305
BssMI GATC 2 cut(s) 101, 363
Bst6I CTCTTC 1 cut(s) 314
BstC8I GCNNGC 1 cut(s) 211
BstKTI GATC 2 cut(s) 104, 366
BstMBI GATC 2 cut(s) 101, 363
BstV1I GCAGC 1 cut(s) 27
BstV2I GAAGAC 1 cut(s) 384
BsuRI GGCC 1 cut(s) 180
Cac8I GCNNGC 1 cut(s) 211
CviJI RGCY 4 cut(s) 19, 180, 271, 371
CviKI_1 RGCY 4 cut(s) 19, 180, 271, 371
DpnI GATC 2 cut(s) 103, 365
DpnII GATC 2 cut(s) 101, 363
Eam1104I CTCTTC 1 cut(s) 314
EarI CTCTTC 1 cut(s) 314
FaiI YATR 3 cut(s) 132, 234, 409
FaqI GGGAC 1 cut(s) 40
FauI CCCGC 1 cut(s) 214
FbaI TGATCA 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 41
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 427
GluI GCNGC 1 cut(s) 41
HaeIII GGCC 1 cut(s) 180
HinfI GANTC 2 cut(s) 116, 225
HphI GGTGA 2 cut(s) 148, 391
Hpy188I TCNGA 2 cut(s) 157, 230
Hpy188III TCNNGA 1 cut(s) 120
Hpy99I CGWCG 1 cut(s) 218
HpyCH4IV ACGT 2 cut(s) 194, 216
HpySE526I ACGT 2 cut(s) 194, 216
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 2 cut(s) 101, 363
LguI GCTCTTC 1 cut(s) 314
LpnPI CCDG 8 cut(s) 29, 35, 97, 105, 195, 286, 296, 415
Lsp1109I GCAGC 1 cut(s) 27
MaeI CTAG 1 cut(s) 427
MaeII ACGT 2 cut(s) 194, 216
MaeIII GTNAC 1 cut(s) 284
MalI GATC 2 cut(s) 103, 365
MboI GATC 2 cut(s) 101, 363
MboII GAAGA 3 cut(s) 151, 331, 389
MluCI AATT 2 cut(s) 240, 353
MmeI TCCRAC 2 cut(s) 150, 211
MnlI CCTC 1 cut(s) 275
MspA1I CMGCKG 1 cut(s) 209
NdeII GATC 2 cut(s) 101, 363
PciSI GCTCTTC 1 cut(s) 314
PfeI GAWTC 2 cut(s) 116, 225
PkrI GCNGC 1 cut(s) 42
Psp1406I AACGTT 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 314
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 2 cut(s) 101, 363
SetI ASST 4 cut(s) 197, 219, 286, 373
Sse9I AATT 2 cut(s) 240, 353
SsiI CCGC 2 cut(s) 109, 207
SspMI CTAG 1 cut(s) 427
TaiI ACGT 2 cut(s) 197, 219
TaqI TCGA 1 cut(s) 358
TasI AATT 2 cut(s) 240, 353
TfiI GAWTC 2 cut(s) 116, 225
TseI GCWGC 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 389
XapI RAATTY 1 cut(s) 353
XspI CTAG 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.