RLG00000015955

Rhamnogalacturonate lyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0014774
Physical Location & Seq
Forward (+)
2744933 .. 2745655
723 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015955

Sequence Viewer

Length: 351 bp
ATGGAGTTGTATCGTGACACTTCCCTAAACGGTTTATTTCTTTACTCTATAAGTGCTTTTATGATCAACATCTACGCCATCGGAGATTTACAAAGAAAAGTAGTTCGGAAAGTGAGAAAATCGACAAGGAAATCAGTTCCGGTGAACGTTGACAAAAGGTACATAATGCAGCGAGGACGTTCCGGGTTCTATACATATGCCATCTTTGAGCGTCTTGAAGGGTGGCCGGGAGGGGACATGGAGACACTTAGAGTGGCTTACAAGCTTCATCAAGCCAAGTTTCGATATATGGCGCTATCGGACACTAGGCAAAGGTTCATGCCAACAATCGATGACCGAGCGGCCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CBM-like Rhamnogal_lyase fn3_3

Protein Analysis

117

Amino Acids

13.66

Weight (kDa)

10.15

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhamnogal_lyase PF06045 35 - 115 2.5e-32 Rhamnogalacturonate lyase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 341
AciI CCGC 1 cut(s) 341
AclI AACGTT 1 cut(s) 147
AcoI YGGCCR 2 cut(s) 224, 342
AfaI GTAC 1 cut(s) 161
AgsI TTSAA 1 cut(s) 218
AluBI AGCT 1 cut(s) 265
AluI AGCT 1 cut(s) 265
Alw26I GTCTC 1 cut(s) 236
AoxI GGCC 2 cut(s) 224, 342
ApeKI GCWGC 1 cut(s) 169
AspLEI GCGC 1 cut(s) 295
AsuC2I CCSGG 2 cut(s) 184, 228
AsuHPI GGTGA 1 cut(s) 154
BbvI GCAGC 1 cut(s) 181
BccI CCATC 2 cut(s) 86, 209
BclI TGATCA 1 cut(s) 63
BcnI CCSGG 2 cut(s) 184, 228
BcoDI GTCTC 1 cut(s) 236
BfaI CTAG 1 cut(s) 306
BfoI RGCGCY 1 cut(s) 296
BisI GCNGC 2 cut(s) 170, 342
BlsI GCNGC 2 cut(s) 171, 343
Bme1390I CCNGG 2 cut(s) 184, 228
BmrFI CCNGG 2 cut(s) 184, 228
BpuMI CCSGG 2 cut(s) 184, 228
Bsa29I ATCGAT 1 cut(s) 330
BsaBI GATNNNNATC 1 cut(s) 68
BsaWI WCCGGW 1 cut(s) 139
Bse8I GATNNNNATC 1 cut(s) 68
BseCI ATCGAT 1 cut(s) 330
BseJI GATNNNNATC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 181
BshFI GGCC 2 cut(s) 226, 344
BshVI ATCGAT 1 cut(s) 330
BsiSI CCGG 3 cut(s) 140, 183, 227
BslFI GGGAC 1 cut(s) 248
BsmAI GTCTC 1 cut(s) 236
BsmFI GGGAC 1 cut(s) 248
BsnI GGCC 2 cut(s) 226, 344
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 1 cut(s) 341
BspANI GGCC 2 cut(s) 226, 344
BspDI ATCGAT 1 cut(s) 330
BsrBI CCGCTC 1 cut(s) 341
BssMI GATC 1 cut(s) 63
Bst4CI ACNGT 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 248, 348
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 236
BstMBI GATC 1 cut(s) 63
BstSCI CCNGG 2 cut(s) 182, 226
BstV1I GCAGC 1 cut(s) 181
Bsu15I ATCGAT 1 cut(s) 330
BsuRI GGCC 2 cut(s) 226, 344
BsuTUI ATCGAT 1 cut(s) 330
CfoI GCGC 1 cut(s) 295
ClaI ATCGAT 1 cut(s) 330
CseI GACGC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 238, 319
CviJI RGCY 5 cut(s) 226, 257, 265, 275, 344
CviKI_1 RGCY 5 cut(s) 226, 257, 265, 275, 344
CviQI GTAC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 248, 348
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
EaeI YGGCCR 2 cut(s) 224, 342
FaeI CATG 2 cut(s) 241, 322
FaqI GGGAC 1 cut(s) 248
FatI CATG 2 cut(s) 237, 318
FauNDI CATATG 1 cut(s) 196
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 2 cut(s) 170, 342
Fsp4HI GCNGC 2 cut(s) 170, 342
FspBI CTAG 1 cut(s) 306
GlaI GCGC 1 cut(s) 294
GluI GCNGC 2 cut(s) 170, 342
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 2 cut(s) 226, 344
HapII CCGG 3 cut(s) 140, 183, 227
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 295
Hin1II CATG 2 cut(s) 241, 322
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HindIII AAGCTT 1 cut(s) 263
HpaII CCGG 3 cut(s) 140, 183, 227
HphI GGTGA 1 cut(s) 154
Hpy166II GTNNAC 2 cut(s) 145, 151
Hpy188I TCNGA 3 cut(s) 83, 108, 301
Hpy188III TCNNGA 2 cut(s) 14, 215
Hpy8I GTNNAC 2 cut(s) 145, 151
HpyAV CCTTC 1 cut(s) 212
HpyCH4III ACNGT 1 cut(s) 32
HpyCH4IV ACGT 2 cut(s) 147, 178
HpyCH4V TGCA 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 248, 348
HpySE526I ACGT 2 cut(s) 147, 178
Hsp92II CATG 2 cut(s) 241, 322
HspAI GCGC 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 3 cut(s) 153, 196, 240
Lsp1109I GCAGC 1 cut(s) 181
MaeI CTAG 1 cut(s) 306
MaeII ACGT 2 cut(s) 147, 178
MaeIII GTNAC 1 cut(s) 14
MalI GATC 1 cut(s) 65
MbiI CCGCTC 1 cut(s) 341
MboI GATC 1 cut(s) 63
MnlI CCTC 2 cut(s) 167, 224
MspI CCGG 3 cut(s) 140, 183, 227
MspR9I CCNGG 2 cut(s) 184, 228
NciI CCSGG 2 cut(s) 184, 228
NdeI CATATG 1 cut(s) 196
NdeII GATC 1 cut(s) 63
NlaIII CATG 2 cut(s) 241, 322
NmuCI GTSAC 1 cut(s) 14
PkrI GCNGC 2 cut(s) 171, 343
Psp1406I AACGTT 1 cut(s) 147
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
SatI GCNGC 2 cut(s) 170, 342
Sau3AI GATC 1 cut(s) 63
ScrFI CCNGG 2 cut(s) 184, 228
SetI ASST 5 cut(s) 150, 161, 181, 267, 317
SsiI CCGC 1 cut(s) 341
SspMI CTAG 1 cut(s) 306
StyD4I CCNGG 2 cut(s) 182, 226
TaaI ACNGT 1 cut(s) 32
TaiI ACGT 2 cut(s) 150, 181
TaqI TCGA 3 cut(s) 122, 283, 330
TaqII GACCGA 1 cut(s) 351
TauI GCSGC 1 cut(s) 344
TseFI GTSAC 1 cut(s) 14
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 2 cut(s) 257, 307
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.