RchiOBHm_Chr2g0151171

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0014530
Physical Location & Seq
Forward (+)
68806780 .. 68808392
1613 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1392 bp
ATGAGGTACACTCCACTCTGTTTGTTCTGTATATTAGCTGCAACATTAGTCCTCATCGTGATTTACTTGAAGCACAAGAAACACTTTGGCACAAGCAAGAGAAAACTACCTCCTGGGGAAATGGGGCTTCCCTGGATAGGCCAAACAATGGAGTTCTACAGAGCTCAACAGAAAAACAGTTTGTTTGATGACTTTGTTCAGCCCCGGATTGCAAAACATGGCAAAATCTTCACAACACATTTAATGGGATCACCAACTGTGATTGTGAATGGAGCCAATGCTAACAGATTCCTGTTGTCCAATGAGTTCAAGCTGGTGATAAGTTCGTGGCCTTCAGCATCGGTTCAGCTTATGGGGAAGGACTCCATCATGGAAAAGCAAGGGGAGAGGCACCGCTGCCTTCGCGGGCTTATAGGCTCAAGCCTTGGCCAGGCAGGGCTTGAGACGTTAGTGCCTAAAATATGTAACTTAATGAAGTTGCACTTGGACACAAAATGGAAAGGCCAGGATGAGATCAGCCTGTATCATGCAACGAAAGTCTTGACTTTTTCGATAGTGTTTGAGTGCTTGTTGGGGATCAATGTGAAGGCAGATATGTTGGGAACATTTGAGAGGGTTTTGGAAGGGGTTTTTGCAGCACCAATTAATTTTCCGGGGTCCAGGTTTTGGCGAGCAAAGAAAGCGAGGAAGGAGATTGAGAAAATACTGGTTAAAGTAGTAAGAGAGAAGAAGAAGCACATGGAAGAAAGCAAGAAAGAAGAAGAAGAGCAAGGAGGGATGTTGGAGGTTGTTGATAATGTGGTCTTGCTGGTGTTCGCAGCTCATGATACTACTTCTTTTGCCATTGCCATGACATTCAAAATGTTGGCTCAGCATCCATATTGCCACAGTTTCCTACTTAAAGAACATGCTGAGATAATGAGAAGCAAAAAACCTGGTGATCAAAATCTGACATTGGATGATACGAAGAACATGAAGTACACCTGGCAGGTTGCTCGTGAAAGCATGCGTCTCTTCCCTCCTATCTTCGGCTCTTTCAGGAAAGCCATTGTTGATATTGAATATGAAGGATTCACTATTCCACAAGGATGGAAGGTGTTGTGGACAACATATGGAACACATTACAATTCAGAATATTTTGAAGATCCTTCGAGTTTCAATCCAAGCCGGTTTGAGGAGCATGTTCCACCATATGCCTTTCTGGCATTCGGAGGAGGGCCAAGAGTTTGTGCAGGGTACCAACTTGCTAAGCTGAACATCCTCATTTTCATGCATTTCATCGTGACTCGTTATGACTGGTTTTTGCTATATCCTGATGAGCCTATATCCATGGATCCTCTTCCATTTCCTTCATATGGAATGCCTATTAAAATTACTCCAAAGTTGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00830 ko01100 map00830 map01100
Pfam Domains
Protein Families
p450

Protein Analysis

463

Amino Acids

53.05

Weight (kDa)

9.17

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 446 6.8e-55 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014530)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G42850 AT2G42850
fragaria_vesca FvH4_6g38110
malus_domestica MD17G1140500.v1.1
prunus_persica Prupe.3G171100_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0151171
rosa_laevigata RLG00000020538
rosa_multiflora Rmu_sc0002298.1_g000017 Rmu_sc0002516.1_g000001
rosa_roxburghii Rroxscaffold_2G00096680
rosa_rugosa Rorug02G0425400
rosa_samantha Rh2BG497900 Rh2CG471800 Rh2CG472300 Rh2DG508800
rosa_wichuraiana Rw2G039800 Rw2G040210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 979
Acc65I GGTACC 1 cut(s) 1236
AccB1I GGYRCC 2 cut(s) 390, 1236
AccB7I CCANNNNNTGG 2 cut(s) 148, 666
AccII CGCG 1 cut(s) 405
AciI CCGC 2 cut(s) 394, 405
AclWI GGATC 5 cut(s) 256, 584, 1139, 1328, 1341
AcoI YGGCCR 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 318
AfaI GTAC 3 cut(s) 8, 980, 1238
AfiI CCNNNNNNNGG 7 cut(s) 137, 148, 430, 666, 1028, 1174, 1355
AgsI TTSAA 6 cut(s) 70, 310, 859, 1061, 1142, 1159
AjnI CCWGG 7 cut(s) 112, 131, 429, 504, 659, 934, 983
AjuI GAANNNNNNNTTGG 2 cut(s) 467, 499
AluBI AGCT 6 cut(s) 38, 164, 313, 349, 821, 1252
AluI AGCT 6 cut(s) 38, 164, 313, 349, 821, 1252
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 437, 1016
AlwI GGATC 5 cut(s) 256, 584, 1139, 1328, 1341
AoxI GGCC 5 cut(s) 139, 329, 427, 502, 1217
ApeKI GCWGC 4 cut(s) 38, 396, 635, 818
AseI ATTAAT 1 cut(s) 645
Asp718I GGTACC 1 cut(s) 1236
AspS9I GGNCC 2 cut(s) 657, 1217
AsuC2I CCSGG 2 cut(s) 205, 654
AsuHPI GGTGA 3 cut(s) 243, 328, 950
AvaII GGWCC 1 cut(s) 657
BalI TGGCCA 1 cut(s) 429
BamHI GGATCC 1 cut(s) 1333
BanI GGYRCC 2 cut(s) 390, 1236
BanII GRGCYC 1 cut(s) 166
BauI CACGAG 1 cut(s) 996
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 4 cut(s) 25, 383, 647, 830
BccI CCATC 2 cut(s) 374, 1083
BcgI CGANNNNNNTGC 2 cut(s) 977, 1011
BciT130I CCWGG 7 cut(s) 114, 133, 431, 506, 661, 936, 985
BclI TGATCA 1 cut(s) 940
BcnI CCSGG 2 cut(s) 205, 654
BcoDI GTCTC 2 cut(s) 437, 1016
BfmI CTRYAG 1 cut(s) 157
BfuAI ACCTGC 1 cut(s) 979
BglI GCCNNNNNGGC 1 cut(s) 1202
BisI GCNGC 4 cut(s) 39, 397, 636, 819
BlpI GCTNAGC 2 cut(s) 870, 1248
BlsI GCNGC 4 cut(s) 40, 398, 637, 820
Bme1390I CCNGG 9 cut(s) 114, 133, 205, 431, 506, 654, 661, 936, 985
Bme18I GGWCC 1 cut(s) 657
BmgT120I GGNCC 2 cut(s) 657, 1217
BmiI GGNNCC 5 cut(s) 274, 392, 658, 1238, 1335
BmrFI CCNGG 9 cut(s) 114, 133, 205, 431, 506, 654, 661, 936, 985
BmsI GCATC 2 cut(s) 347, 883
BplI GAGNNNNNCTC 1 cut(s) 27
Bpu1102I GCTNAGC 2 cut(s) 870, 1248
BpuEI CTTGAG 2 cut(s) 403, 461
BpuMI CCSGG 2 cut(s) 205, 654
BsaBI GATNNNNATC 1 cut(s) 945
BsaJI CCNNGG 6 cut(s) 113, 131, 203, 424, 653, 1329
Bsc4I CCNNNNNNNGG 7 cut(s) 137, 148, 430, 666, 1028, 1174, 1355
Bse118I RCCGGY 1 cut(s) 1167
Bse1I ACTGG 2 cut(s) 711, 1301
Bse3DI GCAATG 1 cut(s) 843
Bse8I GATNNNNATC 1 cut(s) 945
BseBI CCWGG 7 cut(s) 114, 133, 431, 506, 661, 936, 985
BseDI CCNNGG 6 cut(s) 113, 131, 203, 424, 653, 1329
BseGI GGATG 6 cut(s) 514, 783, 874, 964, 1094, 1257
BseJI GATNNNNATC 1 cut(s) 945
BseLI CCNNNNNNNGG 7 cut(s) 137, 148, 430, 666, 1028, 1174, 1355
BseMI GCAATG 1 cut(s) 843
BseMII CTCAG 2 cut(s) 884, 903
BseNI ACTGG 2 cut(s) 711, 1301
BseRI GAGGAG 2 cut(s) 1190, 1227
BseXI GCAGC 4 cut(s) 25, 383, 647, 830
BsgI GTGCAG 1 cut(s) 1251
Bsh1236I CGCG 1 cut(s) 405
BshFI GGCC 5 cut(s) 141, 331, 429, 504, 1219
BshNI GGYRCC 2 cut(s) 390, 1236
BsiHKAI GWGCWC 1 cut(s) 166
BsiSI CCGG 3 cut(s) 205, 653, 1168
BslI CCNNNNNNNGG 7 cut(s) 137, 148, 430, 666, 1028, 1174, 1355
BsmAI GTCTC 2 cut(s) 437, 1016
BsmBI CGTCTC 2 cut(s) 437, 1016
BsmI GAATGC 2 cut(s) 1205, 1365
BsnI GGCC 5 cut(s) 141, 331, 429, 504, 1219
Bsp1286I GDGCHC 1 cut(s) 166
Bsp143I GATC 6 cut(s) 248, 513, 576, 940, 1144, 1333
Bsp1720I GCTNAGC 2 cut(s) 870, 1248
Bsp19I CCATGG 1 cut(s) 1329
BspACI CCGC 2 cut(s) 394, 405
BspANI GGCC 5 cut(s) 141, 331, 429, 504, 1219
BspCNI CTCAG 2 cut(s) 883, 904
BspFNI CGCG 1 cut(s) 405
BspHI TCATGA 1 cut(s) 823
BspLI GGNNCC 5 cut(s) 274, 392, 658, 1238, 1335
BspMI ACCTGC 1 cut(s) 979
BspPI GGATC 5 cut(s) 256, 584, 1139, 1328, 1341
BspQI GCTCTTC 1 cut(s) 759
BspT107I GGYRCC 2 cut(s) 390, 1236
BsrDI GCAATG 1 cut(s) 843
BsrFI RCCGGY 1 cut(s) 1167
BsrI ACTGG 2 cut(s) 711, 1301
BssAI RCCGGY 1 cut(s) 1167
BssECI CCNNGG 6 cut(s) 113, 131, 203, 424, 653, 1329
BssMI GATC 6 cut(s) 248, 513, 576, 940, 1144, 1333
BssSI CACGAG 1 cut(s) 996
BssT1I CCWWGG 2 cut(s) 424, 1329
Bst2BI CACGAG 1 cut(s) 996
Bst2UI CCWGG 7 cut(s) 114, 133, 431, 506, 661, 936, 985
Bst4CI ACNGT 3 cut(s) 179, 259, 890
Bst6I CTCTTC 3 cut(s) 759, 1019, 1344
BstC8I GCNNGC 3 cut(s) 407, 672, 1007
BstDEI CTNAG 3 cut(s) 870, 912, 1248
BstDSI CCRYGG 1 cut(s) 1329
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 6 cut(s) 514, 783, 874, 964, 1094, 1257
BstFNI CGCG 1 cut(s) 405
BstKTI GATC 6 cut(s) 251, 516, 579, 943, 1147, 1336
BstMAI GTCTC 2 cut(s) 437, 1016
BstMBI GATC 6 cut(s) 248, 513, 576, 940, 1144, 1333
BstMWI GCNNNNNNNGC 3 cut(s) 402, 680, 1202
BstNI CCWGG 7 cut(s) 114, 133, 431, 506, 661, 936, 985
BstNSI RCATGY 3 cut(s) 911, 1009, 1184
BstSCI CCNGG 9 cut(s) 112, 131, 203, 429, 504, 652, 659, 934, 983
BstSFI CTRYAG 1 cut(s) 157
BstUI CGCG 1 cut(s) 405
BstV1I GCAGC 4 cut(s) 25, 383, 647, 830
BstX2I RGATCY 2 cut(s) 1144, 1333
BstXI CCANNNNNNTGG 1 cut(s) 1089
BstYI RGATCY 2 cut(s) 1144, 1333
BsuRI GGCC 5 cut(s) 141, 331, 429, 504, 1219
BtgI CCRYGG 1 cut(s) 1329
BtsCI GGATG 6 cut(s) 514, 783, 874, 964, 1094, 1257
BveI ACCTGC 1 cut(s) 979
Cac8I GCNNGC 3 cut(s) 407, 672, 1007
CciI TCATGA 1 cut(s) 823
Cfr10I RCCGGY 1 cut(s) 1167
Cfr13I GGNCC 2 cut(s) 657, 1217
CseI GACGC 1 cut(s) 998
CsiI ACCWGGT 1 cut(s) 934
Csp6I GTAC 3 cut(s) 7, 979, 1237
CspCI CAANNNNNGTGG 1 cut(s) 38
CviQI GTAC 3 cut(s) 7, 979, 1237
DdeI CTNAG 3 cut(s) 870, 912, 1248
DpnI GATC 6 cut(s) 250, 515, 578, 942, 1146, 1335
DpnII GATC 6 cut(s) 248, 513, 576, 940, 1144, 1333
EaeI YGGCCR 1 cut(s) 427
Eam1104I CTCTTC 3 cut(s) 759, 1019, 1344
EarI CTCTTC 3 cut(s) 759, 1019, 1344
Ecl136II GAGCTC 1 cut(s) 164
Eco130I CCWWGG 2 cut(s) 424, 1329
Eco24I GRGCYC 1 cut(s) 166
Eco47I GGWCC 1 cut(s) 657
Eco53kI GAGCTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 164
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 7 cut(s) 112, 131, 429, 504, 659, 934, 983
EcoT14I CCWWGG 2 cut(s) 424, 1329
EcoT22I ATGCAT 1 cut(s) 1275
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 2 cut(s) 424, 1329
Esp3I CGTCTC 2 cut(s) 437, 1016
FalI AAGNNNNNCTT 4 cut(s) 68, 100, 467, 499
FauI CCCGC 1 cut(s) 398
FauNDI CATATG 3 cut(s) 1111, 1192, 1354
FbaI TGATCA 1 cut(s) 940
Fnu4HI GCNGC 4 cut(s) 39, 397, 636, 819
FokI GGATG 6 cut(s) 521, 790, 861, 971, 1101, 1244
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 4 cut(s) 39, 397, 636, 819
GluI GCNGC 4 cut(s) 39, 397, 636, 819
HaeIII GGCC 5 cut(s) 141, 331, 429, 504, 1219
HapII CCGG 3 cut(s) 205, 653, 1168
HgaI GACGC 1 cut(s) 998
HinfI GANTC 4 cut(s) 288, 362, 1071, 1285
HpaII CCGG 3 cut(s) 205, 653, 1168
HphI GGTGA 3 cut(s) 243, 328, 950
Hpy166II GTNNAC 3 cut(s) 9, 981, 1104
Hpy188I TCNGA 3 cut(s) 951, 1132, 1211
Hpy188III TCNNGA 7 cut(s) 58, 541, 824, 998, 1039, 1282, 1313
Hpy8I GTNNAC 3 cut(s) 9, 981, 1104
HpyCH4III ACNGT 3 cut(s) 179, 259, 890
HpyCH4IV ACGT 1 cut(s) 446
HpyCH4V TGCA 7 cut(s) 41, 212, 481, 530, 635, 1232, 1273
HpyF10VI GCNNNNNNNGC 3 cut(s) 402, 680, 1202
HpyF3I CTNAG 3 cut(s) 870, 912, 1248
HpySE526I ACGT 1 cut(s) 446
KpnI GGTACC 1 cut(s) 1240
Ksp22I TGATCA 1 cut(s) 940
Kzo9I GATC 6 cut(s) 248, 513, 576, 940, 1144, 1333
LguI GCTCTTC 1 cut(s) 759
LmnI GCTCC 2 cut(s) 272, 1177
Lsp1109I GCAGC 4 cut(s) 25, 383, 647, 830
LweI GCATC 2 cut(s) 347, 883
MabI ACCWGGT 1 cut(s) 934
MaeII ACGT 1 cut(s) 446
MaeIII GTNAC 2 cut(s) 464, 1282
MalI GATC 6 cut(s) 250, 515, 578, 942, 1146, 1335
MboI GATC 6 cut(s) 248, 513, 576, 940, 1144, 1333
MflI RGATCY 2 cut(s) 1144, 1333
MhlI GDGCHC 1 cut(s) 166
MlsI TGGCCA 1 cut(s) 429
MluCI AATT 4 cut(s) 642, 646, 1126, 1371
MluNI TGGCCA 1 cut(s) 429
MlyI GAGTC 2 cut(s) 356, 1279
MmeI TCCRAC 1 cut(s) 762
Mox20I TGGCCA 1 cut(s) 429
Mph1103I ATGCAT 1 cut(s) 1275
MscI TGGCCA 1 cut(s) 429
MseI TTAA 6 cut(s) 242, 470, 645, 711, 900, 1368
MslI CAYNNNNRTG 3 cut(s) 848, 1087, 1268
Msp20I TGGCCA 1 cut(s) 429
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 3 cut(s) 205, 653, 1168
MspR9I CCNGG 9 cut(s) 114, 133, 205, 431, 506, 654, 661, 936, 985
Mva1269I GAATGC 2 cut(s) 1205, 1365
MvaI CCWGG 7 cut(s) 114, 133, 431, 506, 661, 936, 985
MvnI CGCG 1 cut(s) 405
MwoI GCNNNNNNNGC 3 cut(s) 402, 680, 1202
NciI CCSGG 2 cut(s) 205, 654
NcoI CCATGG 1 cut(s) 1329
NdeI CATATG 3 cut(s) 1111, 1192, 1354
NdeII GATC 6 cut(s) 248, 513, 576, 940, 1144, 1333
NlaIV GGNNCC 5 cut(s) 274, 392, 658, 1238, 1335
NmuCI GTSAC 1 cut(s) 1282
NsiI ATGCAT 1 cut(s) 1275
NspI RCATGY 3 cut(s) 911, 1009, 1184
PaeI GCATGC 1 cut(s) 1009
PagI TCATGA 1 cut(s) 823
PciSI GCTCTTC 1 cut(s) 759
PctI GAATGC 2 cut(s) 1205, 1365
PfeI GAWTC 2 cut(s) 288, 1071
PflMI CCANNNNNTGG 2 cut(s) 148, 666
PkrI GCNGC 4 cut(s) 40, 398, 637, 820
PleI GAGTC 2 cut(s) 356, 1279
PpsI GAGTC 2 cut(s) 356, 1279
PshBI ATTAAT 1 cut(s) 645
Psp124BI GAGCTC 1 cut(s) 166
Psp6I CCWGG 7 cut(s) 112, 131, 429, 504, 659, 934, 983
PspGI CCWGG 7 cut(s) 112, 131, 429, 504, 659, 934, 983
PspN4I GGNNCC 5 cut(s) 274, 392, 658, 1238, 1335
PspPI GGNCC 2 cut(s) 657, 1217
PsrI GAACNNNNNNTAC 2 cut(s) 962, 994
PsuI RGATCY 2 cut(s) 1144, 1333
RsaI GTAC 3 cut(s) 8, 980, 1238
RsaNI GTAC 3 cut(s) 7, 979, 1237
RseI CAYNNNNRTG 3 cut(s) 848, 1087, 1268
SacI GAGCTC 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 759
SaqAI TTAA 6 cut(s) 242, 470, 645, 711, 900, 1368
SatI GCNGC 4 cut(s) 39, 397, 636, 819
Sau3AI GATC 6 cut(s) 248, 513, 576, 940, 1144, 1333
Sau96I GGNCC 2 cut(s) 657, 1217
SchI GAGTC 2 cut(s) 356, 1279
ScrFI CCNGG 9 cut(s) 114, 133, 205, 431, 506, 654, 661, 936, 985
SduI GDGCHC 1 cut(s) 166
SexAI ACCWGGT 1 cut(s) 934
SfaNI GCATC 2 cut(s) 347, 883
SfcI CTRYAG 1 cut(s) 157
SinI GGWCC 1 cut(s) 657
SmiMI CAYNNNNRTG 3 cut(s) 848, 1087, 1268
SmlI CTYRAG 2 cut(s) 418, 440
SmoI CTYRAG 2 cut(s) 418, 440
SphI GCATGC 1 cut(s) 1009
Sse9I AATT 4 cut(s) 642, 646, 1126, 1371
SsiI CCGC 2 cut(s) 394, 405
SspI AATATT 1 cut(s) 1136
SstI GAGCTC 1 cut(s) 166
StyD4I CCNGG 9 cut(s) 112, 131, 203, 429, 504, 652, 659, 934, 983
StyI CCWWGG 2 cut(s) 424, 1329
TaaI ACNGT 3 cut(s) 179, 259, 890
TaiI ACGT 1 cut(s) 449
TaqI TCGA 2 cut(s) 551, 1151
TasI AATT 4 cut(s) 642, 646, 1126, 1371
TatI WGTACW 1 cut(s) 978
TfiI GAWTC 2 cut(s) 288, 1071
Tru1I TTAA 6 cut(s) 242, 470, 645, 711, 900, 1368
Tru9I TTAA 6 cut(s) 242, 470, 645, 711, 900, 1368
TseFI GTSAC 1 cut(s) 1282
TseI GCWGC 4 cut(s) 38, 396, 635, 818
Tsp45I GTSAC 1 cut(s) 1282
TspDTI ATGAA 6 cut(s) 488, 989, 1080, 1258, 1267, 1341
Van91I CCANNNNNTGG 2 cut(s) 148, 666
VpaK11BI GGWCC 1 cut(s) 657
VspI ATTAAT 1 cut(s) 645
XagI CCTNNNNNAGG 1 cut(s) 428
XceI RCATGY 3 cut(s) 911, 1009, 1184
Zsp2I ATGCAT 1 cut(s) 1275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.