RchiOBHm_Chr2g0164981
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0015861
Physical Location & Seq
Reverse (-)
80018184 .. 80019534
1351 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 993 bp
ATGGCAAGTGTGCTGGTGGGATGGGGCGGTGTTGCGGAAAAAGGGTGGAGGAAAGGTCCTTGGACTCCTGAAGAGGATAAGCTGCTCAGTGAGCATGTCAATTTGCATGGAGAGGGAAGATGGAGTTCTGTTGCTAGGTGCACAGGGTTGAACAGGAGTGGGAAAAGTTGCAGACTTAGATGGGTGAATTATCTTAGGCCTGGACTGAAGAGAGGCCAGTTAACACCTCAGGAGGAAGGCATTATTATTGAATTGCATGCTTTATGGGGTAACAAGTGGTCTACAATTGCTAGATACTTGCCTGGGAGAACAGACAATGAGATAAAGAACTACTGGAGAACTCATTTCAAAAAGAAAGAGAAGTGCACCGAGAAACAGCAAAAACGAAAAGCTCAAATCCTCAAAGAGAAGCAACAACAACAACAACAAGATATAAAGGATGATCAAGAAAACAAGAAAATAAAATCAGCCAATAGTAGTACTTCACCACAGGGACATAGTGAAGCCTTGACCTGCAGCAGCGAATTACGAAATAATAATATGATCCCTGATGAGCTGCAGCAGCTGGCACAGCCAACTCAAGAGATGAATGTTGTTTTTGCATCCCCGAATATGGAGGAGGCTCAATGCTTACCTGCACTAGTGTCGATGAACCAATTAGGCGGTACTACTAGTGCCGTTGAATCTACTATACGGTCATCGGAAAACACTGCCATGATTAACATTGAATCAGAAGACGATCAAGGGTTTTGGGGACAACTCTGGAACCTAGACGATGATCATGGTCATGTACAAGCTAACCGTGTGGGATATCACACCAGTTATAGCAATAGTGAGTGCCGGAACAGTTTAGCCTTGCAGCAGAATCAAGCAATTACAGCTACATCTTCTGGAGCCATACGCAATGAAGCTACTAGGGCTAGCAATTTTTCCTGGGGAGAGGATATTCGTTCCTATAAGTACTTCTATAGCGGATCAGGCCACACATTCTAA

Protein Analysis

330

Amino Acids

37.32

Weight (kDa)

8.14

Isoelectric Point (pI)

57.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 18 - 65 2.1e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 21 - 79 3.2e-11 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 71 - 115 4.2e-16 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 75 - 126 1.5e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0015861)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G30210
fragaria_vesca FvH4_6g46440
malus_domestica MD09G1073600.v1.1 MD17G1065100.v1.1
prunus_persica Prupe.3G249600_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0164981
rosa_laevigata RLG00000021503
rosa_roxburghii Rroxscaffold_2G00086140
rosa_rugosa Rorug02G0511900 Rorug02G0512000
rosa_samantha Rh2AG580100 Rh2BG591200 Rh2CG561700 Rh2DG601500
rosa_wichuraiana Rw2G048150

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 521, 643
AccI GTMKAC 1 cut(s) 281
AciI CCGC 4 cut(s) 27, 35, 663, 972
AclWI GGATC 2 cut(s) 538, 982
AcuI CTGAAG 2 cut(s) 90, 227
AfaI GTAC 4 cut(s) 481, 667, 792, 962
AfiI CCNNNNNNNGG 1 cut(s) 613
AgsI TTSAA 5 cut(s) 151, 251, 349, 683, 728
AhlI ACTAGT 2 cut(s) 640, 671
AjnI CCWGG 3 cut(s) 199, 301, 932
AluBI AGCT 7 cut(s) 82, 392, 556, 565, 797, 881, 911
AluI AGCT 7 cut(s) 82, 392, 556, 565, 797, 881, 911
Alw21I GWGCWC 2 cut(s) 143, 368
Alw44I GTGCAC 2 cut(s) 139, 364
AlwI GGATC 2 cut(s) 538, 982
AlwNI CAGNNNCTG 1 cut(s) 565
AoxI GGCC 3 cut(s) 197, 214, 979
ApaLI GTGCAC 2 cut(s) 139, 364
ApeKI GCWGC 7 cut(s) 82, 516, 519, 556, 559, 562, 859
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 196, 477
AsuNHI GCTAGC 1 cut(s) 920
AvaII GGWCC 1 cut(s) 56
AxyI CCTNAGG 1 cut(s) 228
BaeGI GKGCMC 2 cut(s) 143, 368
BbsI GAAGAC 1 cut(s) 741
Bbv12I GWGCWC 2 cut(s) 143, 368
BbvI GCAGC 7 cut(s) 69, 528, 531, 543, 571, 574, 871
BccI CCATC 3 cut(s) 15, 114, 174
BceAI ACGGC 1 cut(s) 662
BcgI CGANNNNNNTGC 2 cut(s) 627, 661
BciT130I CCWGG 3 cut(s) 201, 303, 934
BclI TGATCA 2 cut(s) 442, 778
BcuI ACTAGT 2 cut(s) 640, 671
BfaI CTAG 7 cut(s) 135, 291, 641, 672, 770, 915, 921
BfmI CTRYAG 3 cut(s) 514, 557, 967
BfuAI ACCTGC 2 cut(s) 521, 643
BisI GCNGC 7 cut(s) 83, 517, 520, 557, 560, 563, 860
BlsI GCNGC 7 cut(s) 84, 518, 521, 558, 561, 564, 861
BmcAI AGTACT 2 cut(s) 481, 962
Bme1390I CCNGG 3 cut(s) 201, 303, 934
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 767, 895
BmrFI CCNGG 3 cut(s) 201, 303, 934
BmsI GCATC 1 cut(s) 611
BmtI GCTAGC 1 cut(s) 924
BpiI GAAGAC 1 cut(s) 741
BpmI CTGGAG 2 cut(s) 355, 912
BpuEI CTTGAG 1 cut(s) 564
BsaJI CCNNGG 3 cut(s) 59, 302, 933
BsaXI ACNNNNNCTCC 2 cut(s) 40, 70
Bsc4I CCNNNNNNNGG 1 cut(s) 613
Bse1I ACTGG 3 cut(s) 217, 338, 819
Bse21I CCTNAGG 1 cut(s) 228
Bse3DI GCAATG 1 cut(s) 910
BseBI CCWGG 3 cut(s) 201, 303, 934
BseDI CCNNGG 3 cut(s) 59, 302, 933
BseGI GGATG 3 cut(s) 26, 445, 602
BseLI CCNNNNNNNGG 1 cut(s) 613
BseMI GCAATG 1 cut(s) 910
BseMII CTCAG 2 cut(s) 100, 242
BseNI ACTGG 3 cut(s) 217, 338, 819
BseRI GAGGAG 1 cut(s) 632
BseSI GKGCMC 2 cut(s) 143, 368
BseXI GCAGC 7 cut(s) 69, 528, 531, 543, 571, 574, 871
BsgI GTGCAG 1 cut(s) 621
BshFI GGCC 3 cut(s) 199, 216, 981
BsiHKAI GWGCWC 2 cut(s) 143, 368
BsiSI CCGG 1 cut(s) 841
BslFI GGGAC 2 cut(s) 507, 768
BslI CCNNNNNNNGG 1 cut(s) 613
BsmFI GGGAC 2 cut(s) 507, 768
BsnI GGCC 3 cut(s) 199, 216, 981
Bsp1286I GDGCHC 2 cut(s) 143, 368
Bsp1407I TGTACA 1 cut(s) 790
Bsp143I GATC 5 cut(s) 442, 543, 739, 778, 974
BspACI CCGC 4 cut(s) 27, 35, 663, 972
BspANI GGCC 3 cut(s) 199, 216, 981
BspCNI CTCAG 2 cut(s) 99, 241
BspLI GGNNCC 2 cut(s) 767, 895
BspMAI CTGCAG 2 cut(s) 518, 561
BspMI ACCTGC 2 cut(s) 521, 643
BspOI GCTAGC 1 cut(s) 924
BspPI GGATC 2 cut(s) 538, 982
BsrDI GCAATG 1 cut(s) 910
BsrGI TGTACA 1 cut(s) 790
BsrI ACTGG 3 cut(s) 217, 338, 819
BssECI CCNNGG 3 cut(s) 59, 302, 933
BssMI GATC 5 cut(s) 442, 543, 739, 778, 974
BssT1I CCWWGG 1 cut(s) 59
Bst2UI CCWGG 3 cut(s) 201, 303, 934
Bst4CI ACNGT 3 cut(s) 696, 803, 848
Bst6I CTCTTC 2 cut(s) 66, 203
BstAUI TGTACA 1 cut(s) 790
BstC8I GCNNGC 3 cut(s) 258, 567, 922
BstDEI CTNAG 4 cut(s) 86, 176, 194, 228
BstF5I GGATG 3 cut(s) 26, 445, 602
BstKTI GATC 5 cut(s) 445, 546, 742, 781, 977
BstMBI GATC 5 cut(s) 442, 543, 739, 778, 974
BstMWI GCNNNNNNNGC 6 cut(s) 91, 562, 571, 878, 917, 978
BstNI CCWGG 3 cut(s) 201, 303, 934
BstNSI RCATGY 2 cut(s) 98, 260
BstSCI CCNGG 3 cut(s) 199, 301, 932
BstSFI CTRYAG 3 cut(s) 514, 557, 967
BstSLI GKGCMC 2 cut(s) 143, 368
BstV1I GCAGC 7 cut(s) 69, 528, 531, 543, 571, 574, 871
BstV2I GAAGAC 1 cut(s) 741
Bsu36I CCTNAGG 1 cut(s) 228
BsuRI GGCC 3 cut(s) 199, 216, 981
BtsCI GGATG 3 cut(s) 26, 445, 602
BtsI GCAGTG 1 cut(s) 708
BtsIMutI CAGTG 2 cut(s) 94, 708
BveI ACCTGC 2 cut(s) 521, 643
Cac8I GCNNGC 3 cut(s) 258, 567, 922
CaiI CAGNNNCTG 1 cut(s) 565
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 4 cut(s) 480, 666, 791, 961
CviAII CATG 6 cut(s) 95, 107, 257, 715, 782, 788
CviQI GTAC 4 cut(s) 480, 666, 791, 961
DdeI CTNAG 4 cut(s) 86, 176, 194, 228
DpnI GATC 5 cut(s) 444, 545, 741, 780, 976
DpnII GATC 5 cut(s) 442, 543, 739, 778, 974
Eam1104I CTCTTC 2 cut(s) 66, 203
EarI CTCTTC 2 cut(s) 66, 203
Eco130I CCWWGG 1 cut(s) 59
Eco147I AGGCCT 1 cut(s) 199
Eco32I GATATC 1 cut(s) 812
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 2 cut(s) 90, 227
Eco81I CCTNAGG 1 cut(s) 228
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 3 cut(s) 199, 301, 932
EcoRV GATATC 1 cut(s) 812
EcoT14I CCWWGG 1 cut(s) 59
ErhI CCWWGG 1 cut(s) 59
FaeI CATG 6 cut(s) 98, 110, 260, 718, 785, 791
FaqI GGGAC 2 cut(s) 507, 768
FatI CATG 6 cut(s) 94, 106, 256, 714, 781, 787
FbaI TGATCA 2 cut(s) 442, 778
FblI GTMKAC 1 cut(s) 281
Fnu4HI GCNGC 7 cut(s) 83, 517, 520, 557, 560, 563, 860
FokI GGATG 3 cut(s) 33, 452, 589
Fsp4HI GCNGC 7 cut(s) 83, 517, 520, 557, 560, 563, 860
FspBI CTAG 7 cut(s) 135, 291, 641, 672, 770, 915, 921
GluI GCNGC 7 cut(s) 83, 517, 520, 557, 560, 563, 860
GsuI CTGGAG 2 cut(s) 355, 912
HaeIII GGCC 3 cut(s) 199, 216, 981
HapII CCGG 1 cut(s) 841
Hin1II CATG 6 cut(s) 98, 110, 260, 718, 785, 791
HincII GTYRAC 1 cut(s) 222
HindII GTYRAC 1 cut(s) 222
HinfI GANTC 4 cut(s) 64, 683, 728, 865
HpaI GTTAAC 1 cut(s) 222
HpaII CCGG 1 cut(s) 841
HphI GGTGA 2 cut(s) 196, 477
Hpy166II GTNNAC 4 cut(s) 141, 222, 282, 366
Hpy188I TCNGA 2 cut(s) 703, 733
Hpy188III TCNNGA 6 cut(s) 68, 230, 446, 581, 763, 891
Hpy8I GTNNAC 4 cut(s) 141, 222, 282, 366
HpyAV CCTTC 1 cut(s) 230
HpyCH4III ACNGT 3 cut(s) 696, 803, 848
HpyF10VI GCNNNNNNNGC 6 cut(s) 91, 562, 571, 878, 917, 978
HpyF3I CTNAG 4 cut(s) 86, 176, 194, 228
Hsp92II CATG 6 cut(s) 98, 110, 260, 718, 785, 791
Ksp22I TGATCA 2 cut(s) 442, 778
KspAI GTTAAC 1 cut(s) 222
Kzo9I GATC 5 cut(s) 442, 543, 739, 778, 974
LmnI GCTCC 1 cut(s) 893
Lsp1109I GCAGC 7 cut(s) 69, 528, 531, 543, 571, 574, 871
LweI GCATC 1 cut(s) 611
MaeI CTAG 7 cut(s) 135, 291, 641, 672, 770, 915, 921
MaeIII GTNAC 1 cut(s) 269
MalI GATC 5 cut(s) 444, 545, 741, 780, 976
MboI GATC 5 cut(s) 442, 543, 739, 778, 974
MboII GAAGA 5 cut(s) 83, 129, 220, 746, 879
MfeI CAATTG 1 cut(s) 285
MhlI GDGCHC 2 cut(s) 143, 368
MluCI AATT 8 cut(s) 100, 187, 251, 285, 524, 656, 873, 925
MlyI GAGTC 1 cut(s) 58
MseI TTAA 2 cut(s) 221, 720
MslI CAYNNNNRTG 2 cut(s) 713, 786
MspA1I CMGCKG 1 cut(s) 565
MspI CCGG 1 cut(s) 841
MspR9I CCNGG 3 cut(s) 201, 303, 934
MunI CAATTG 1 cut(s) 285
MvaI CCWGG 3 cut(s) 201, 303, 934
MwoI GCNNNNNNNGC 6 cut(s) 91, 562, 571, 878, 917, 978
NdeII GATC 5 cut(s) 442, 543, 739, 778, 974
NheI GCTAGC 1 cut(s) 920
NlaIII CATG 6 cut(s) 98, 110, 260, 718, 785, 791
NlaIV GGNNCC 2 cut(s) 767, 895
NspI RCATGY 2 cut(s) 98, 260
PaeI GCATGC 1 cut(s) 260
PceI AGGCCT 1 cut(s) 199
PfeI GAWTC 3 cut(s) 683, 728, 865
PkrI GCNGC 7 cut(s) 84, 518, 521, 558, 561, 564, 861
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 3 cut(s) 199, 301, 932
PspGI CCWGG 3 cut(s) 199, 301, 932
PspN4I GGNNCC 2 cut(s) 767, 895
PspPI GGNCC 1 cut(s) 56
PspPPI RGGWCCY 1 cut(s) 56
PstI CTGCAG 2 cut(s) 518, 561
PstNI CAGNNNCTG 1 cut(s) 565
PvuII CAGCTG 1 cut(s) 565
RsaI GTAC 4 cut(s) 481, 667, 792, 962
RsaNI GTAC 4 cut(s) 480, 666, 791, 961
RseI CAYNNNNRTG 2 cut(s) 713, 786
SaqAI TTAA 2 cut(s) 221, 720
SatI GCNGC 7 cut(s) 83, 517, 520, 557, 560, 563, 860
Sau3AI GATC 5 cut(s) 442, 543, 739, 778, 974
Sau96I GGNCC 1 cut(s) 56
ScaI AGTACT 2 cut(s) 481, 962
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 3 cut(s) 201, 303, 934
SduI GDGCHC 2 cut(s) 143, 368
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 3 cut(s) 514, 557, 967
SinI GGWCC 1 cut(s) 56
SmiMI CAYNNNNRTG 2 cut(s) 713, 786
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
SpeI ACTAGT 2 cut(s) 640, 671
SphI GCATGC 1 cut(s) 260
Sse9I AATT 8 cut(s) 100, 187, 251, 285, 524, 656, 873, 925
SseBI AGGCCT 1 cut(s) 199
SsiI CCGC 4 cut(s) 27, 35, 663, 972
SspMI CTAG 7 cut(s) 135, 291, 641, 672, 770, 915, 921
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 3 cut(s) 199, 301, 932
StyI CCWWGG 1 cut(s) 59
TaaI ACNGT 3 cut(s) 696, 803, 848
TaqI TCGA 1 cut(s) 647
TasI AATT 8 cut(s) 100, 187, 251, 285, 524, 656, 873, 925
TatI WGTACW 3 cut(s) 479, 790, 960
TfiI GAWTC 3 cut(s) 683, 728, 865
Tru1I TTAA 2 cut(s) 221, 720
Tru9I TTAA 2 cut(s) 221, 720
TscAI CASTG 2 cut(s) 94, 715
TseI GCWGC 7 cut(s) 82, 516, 519, 556, 559, 562, 859
TspDTI ATGAA 3 cut(s) 602, 665, 921
TspRI CASTG 2 cut(s) 94, 715
VneI GTGCAC 2 cut(s) 139, 364
VpaK11BI GGWCC 1 cut(s) 56
XceI RCATGY 2 cut(s) 98, 260
XmiI GTMKAC 1 cut(s) 281
XspI CTAG 7 cut(s) 135, 291, 641, 672, 770, 915, 921
ZrmI AGTACT 2 cut(s) 481, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.