Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013505

Physical Location & Seq

Genomic Coordinates Forward (+)

83655862 .. 83658872

Gene Structure 3011 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2049 bp

ATGTGTACATTCTCGCTCTCTGCAACTTCAATGCAAGTATCTCCATGTCCAACTCCTTCTTCTTCCTTCTCATTTCCATCACTACCCCCACCAAACCCACAATTACACCGCCACACCCTTCACCTTCACCACCCACAAACCCAGACTCCGCTCCCCCCTTATCTCCTCCGCCTCCAAAGATGTCTGGAGAAGAACACCACCCCACCCCAAAACGACGCCGTCCCATCCCTCCCAACCCTCCCCCGCCACCGCCGCAAGCTCCAAGGCACCTCCTTCCTGGACCACAGCGTCGACATGGACGACCTCACCGCCTCAATCCGCGCCACCCAAAACGAGCACGACCTCAACTCCCTCCTCTCCCCCTACAAGTCCCGCAACCTCTCCATCCGCTTCATGGTCTCCCTCCTCTCCCGCGAGCCCGACTGGCGCCGCTCCCTCGCCATCCTCGACTGGATCAACGACGTCGCCCTATACTCTCCCTCCGTCTTCGCCTACAACGTTGTCATCCGCAACGTCCTCCGCGCCAAGCAGTGGCAAGTCGCCCACGGCCTGTTCGACGAAATGCGCCACAGAGCTCTGGCGCCGGACCGCTACACTTACTCCACTCTCATCACCGCGTTTGGGAAGTCCGGCATGTTCGACGCCGCGCTCTCGTGGCTGCAGAAGATGGAGGAGGACCGGGTGTCCGGGGACCTGGTGCTGTATAGCAACTTGATTGAGCTGTCTAGGAAACTGTGTGATTATAGCAAAGCGATTTCGATATTTTCCAGGCTGAAGAGGTTGGGGATAATGCCGGATTTGGTGGCTTATAACTCGATGATCAATGTGTTTGGTAAGGCCAAGTTGTTTAGGGAGGCCAGGGTTTTGCTGAAGGAGATGAGGGCGGTGGGGGTTTTGCCGGATACTGTTAGCTACTCGACGCTTTTGACAATGTACATTGAGAATGAGAAGTTTGTGGAGGCGTTGGCTGTGTTCTCGGAGATGAATGAGGTCAAGTGCCCGCTTGATCTCACGACGTGTAATATTATGATTGATGTTTATGGGCAGCTGGATATGGCGAAGGAGGCTGATAGGTTGTTTTGGAGCATGAGGAAGATGGGGCTTGAGCCGAATGTTGTTAGTTACAATACTCTTTTGAGGGTTTATGGCGATGCTGAGCTTTTCGGGGAAGCCATTCATCTTTTTCGAATGATGCAGAGAATGGATGTGGAGCAGAATGTTGTCACGTACAATACGATGATTAGGATTTATGGGAAGTCGCTTGAGCATGAAAAGGCTACAAATCTTGTGCAGGAAATGCAGAAGAGGGGAATTCAGCCAAATGCCATTACATACTCGACGATTATATCTATATGGGGTAGGGCTGGGAAATTGGACAGGGCGGCAATGCTGTTTCAAAAGCTGAGGAGCTCTGGGGTTGAGATTGATCAGGTTCTTTATCAGACAATGATTGTATCTTATGAGAGAGTAGGTTTGGTTGCTCATGCTAAGCGCTTGCTTCATGAGCTTAAGCGCCCAGACAATATCCCGAGGGAGACTGCAATTACCATTCTTGCTGGAGCCGGTCGTGTAGAAGAGGCTACATGGGTTTTCCGTCAGGCTTTCGAGGCTGGGGAGGTGAAGGATATAGCTGTATTTGGTTGTATGATTGAGCTTTTCTCAAGAAACCGGAAGTATGCAAATTGCATTGAAGTGTTTGAAAATATGAGAGTGGCAGGATACTTTCCTGCTTCCCATGTGATTGGTCTAGTTCTCAACGCATATGGAAAGTTACGGGAGTTTGAGAAGGCTGATGCTGTATATAGGGAGATGCAGGAAGAAGGGTGTGTTTTCTCCGATGAAATTCACTTCCAAATGCTCAGTCTTTATGGTGCAAGAAAGGACTTTAAGACGGTAGAAGCAATGTTTGAGAGGCTGGTCTCCGATCCCAACATCAACAAAAAGGAGTTGCATCTTGTTGTTGCAGGCATCTATGAAAGATCAAACAGACTTAATGATTCATACCGGATCATGAACAGGATGAATGAAAGTCGAGCTTTGAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

682

Amino Acids

78.19

Weight (kDa)

8.81

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	160 - 209	2.8e-13	PPR repeat family
PPR	PF01535	198 - 227	1.2e-06	PPR repeat
PPR_3	PF13812	220 - 279	5e-08	Pentatricopeptide repeat domain
PPR_long	PF17177	250 - 333	5.6e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	262 - 294	5.3e-06	PPR repeat
PPR_2	PF13041	265 - 311	4.5e-11	PPR repeat family
PPR	PF01535	268 - 297	2.7e-06	PPR repeat
PPR_3	PF13812	289 - 349	5.3e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	300 - 346	4.1e-10	PPR repeat family
PPR_3	PF13812	335 - 384	2.9e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	336 - 382	2.4e-10	PPR repeat family
PPR_long	PF17177	358 - 519	8.4e-12	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	370 - 415	2.3e-11	PPR repeat family
PPR_3	PF13812	394 - 453	6e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	406 - 450	6.4e-15	PPR repeat family
PPR	PF01535	408 - 438	5.1e-07	PPR repeat
PPR_1	PF12854	436 - 467	3e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39980
fragaria_vesca	FvH4_6g49520
malus_domestica	MD09G1044200.v1.1
prunus_persica	Prupe.3G273600_v2.0.a1
pyrus_communis	pycom111g03450
rosa_chinensis	RchiOBHm_Chr2g0169431
rosa_laevigata	RLG00000021863
rosa_multiflora	Rmu_co8342305.1_g000001 Rmu_sc0004665.1_g000014 Rmu_sc0004665.1_g000015 Rmu_sc0006806.1_g000040
rosa_roxburghii	Rroxscaffold_2G00082130 Rroxscaffold_3G00240790
rosa_samantha	Rh2AG611300 Rh2BG624900 Rh2CG593300 Rh2DG635500
rosa_wichuraiana	Rw2G050730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	810
AasI	GACNNNNNNGTC	1 cut(s)	287
AatII	GACGTC	1 cut(s)	465
AccB1I	GGYRCC	3 cut(s)	266, 426, 580
AccB7I	CCANNNNNTGG	1 cut(s)	531
AccBSI	CCGCTC	2 cut(s)	151, 432
AccI	GTMKAC	1 cut(s)	291
AccII	CGCG	5 cut(s)	321, 414, 522, 617, 647
AclI	AACGTT	1 cut(s)	498
AclWI	GGATC	3 cut(s)	461, 1919, 2015
AcsI	RAATTY	2 cut(s)	1311, 1842
AcuI	CTGAAG	2 cut(s)	794, 890
AcyI	GRCGYC	5 cut(s)	216, 427, 462, 581, 642
AdeI	CACNNNGTG	1 cut(s)	1017
AfaI	GTAC	3 cut(s)	7, 935, 1229
AfeI	AGCGCT	1 cut(s)	1493
AfiI	CCNNNNNNNGG	3 cut(s)	394, 531, 621
AflII	CTTAAG	1 cut(s)	1508
AflIII	ACRYGT	1 cut(s)	1016
AgsI	TTSAA	5 cut(s)	30, 1397, 1691, 1700, 2041
AhdI	GACNNNNNGTC	1 cut(s)	682
AjiI	CACGTC	1 cut(s)	1017
AjnI	CCWGG	4 cut(s)	276, 693, 767, 857
AjuI	GAANNNNNNNTTGG	2 cut(s)	43, 75
Alw21I	GWGCWC	3 cut(s)	339, 577, 1412
Alw26I	GTCTC	3 cut(s)	403, 1529, 1924
AlwI	GGATC	3 cut(s)	461, 1919, 2015
Ama87I	CYCGRG	1 cut(s)	1528
Aor51HI	AGCGCT	1 cut(s)	1493
AoxI	GGCC	3 cut(s)	547, 837, 855
ApeKI	GCWGC	2 cut(s)	658, 1045
ApoI	RAATTY	2 cut(s)	1311, 1842
ArsI	GACNNNNNNTTYG	2 cut(s)	1846, 1878
Asp700I	GAANNNNTTC	1 cut(s)	1173
AspLEI	GCGC	8 cut(s)	323, 429, 524, 567, 583, 649, 1494, 1515
AspS9I	GGNCC	4 cut(s)	280, 586, 676, 691
AsuC2I	CCSGG	2 cut(s)	680, 688
AsuHPI	GGTGA	5 cut(s)	113, 119, 298, 604, 1630
AsuII	TTCGAA	1 cut(s)	1186
AvaI	CYCGRG	1 cut(s)	1528
AvaII	GGWCC	4 cut(s)	280, 586, 676, 691
BaeGI	GKGCMC	1 cut(s)	1001
BanI	GGYRCC	3 cut(s)	266, 426, 580
BanII	GRGCYC	3 cut(s)	420, 577, 1412
BauI	CACGAG	1 cut(s)	652
BbsI	GAAGAC	1 cut(s)	478
Bbv12I	GWGCWC	3 cut(s)	339, 577, 1412
BbvCI	CCTCAGC	1 cut(s)	1403
BbvI	GCAGC	2 cut(s)	645, 1057
BccI	CCATC	6 cut(s)	85, 232, 392, 449, 661, 1090
BceAI	ACGGC	2 cut(s)	203, 562
BciT130I	CCWGG	4 cut(s)	278, 695, 769, 859
BciVI	GTATCC	2 cut(s)	895, 1712
BclI	TGATCA	2 cut(s)	819, 1426
BcnI	CCSGG	2 cut(s)	680, 688
BcoDI	GTCTC	3 cut(s)	403, 1529, 1924
BfaI	CTAG	2 cut(s)	726, 1748
BfmI	CTRYAG	1 cut(s)	659
BfoI	RGCGCY	4 cut(s)	430, 584, 1495, 1516
BfrI	CTTAAG	1 cut(s)	1508
BfuI	GTATCC	2 cut(s)	895, 1712
BglI	GCCNNNNNGGC	1 cut(s)	424
BisI	GCNGC	6 cut(s)	253, 430, 645, 659, 1046, 1383
BlpI	GCTNAGC	2 cut(s)	1155, 1488
BlsI	GCNGC	6 cut(s)	254, 431, 646, 660, 1047, 1384
Bme1390I	CCNGG	6 cut(s)	278, 680, 688, 695, 769, 859
Bme18I	GGWCC	4 cut(s)	280, 586, 676, 691
BmeRI	GACNNNNNGTC	1 cut(s)	682
BmeT110I	CYCGRG	1 cut(s)	1528
BmgBI	CACGTC	1 cut(s)	1017
BmgT120I	GGNCC	4 cut(s)	280, 586, 676, 691
BmiI	GGNNCC	5 cut(s)	268, 428, 582, 692, 1561
BmrFI	CCNGG	6 cut(s)	278, 680, 688, 695, 769, 859
BmsI	GCATC	6 cut(s)	1141, 1182, 1783, 1800, 1960, 1977
BpiI	GAAGAC	1 cut(s)	478
BplI	GAGNNNNNCTC	2 cut(s)	1643, 1675
BpmI	CTGGAG	2 cut(s)	206, 1578
Bpu10I	CCTNAGC	1 cut(s)	1403
Bpu1102I	GCTNAGC	2 cut(s)	1155, 1488
Bpu14I	TTCGAA	1 cut(s)	1186
BpuEI	CTTGAG	3 cut(s)	1124, 1283, 1645
BpuMI	CCSGG	2 cut(s)	680, 688
BsaAI	YACGTR	1 cut(s)	1227
BsaHI	GRCGYC	5 cut(s)	216, 427, 462, 581, 642
BsaI	GGTCTC	2 cut(s)	403, 1924
BsaJI	CCNNGG	5 cut(s)	262, 544, 687, 858, 1529
BsaWI	WCCGGW	2 cut(s)	1668, 2004
BsaXI	ACNNNNNCTCC	8 cut(s)	130, 160, 332, 362, 464, 494, 584, 614
Bsc4I	CCNNNNNNNGG	3 cut(s)	394, 531, 621
Bse118I	RCCGGY	1 cut(s)	1562
Bse1I	ACTGG	2 cut(s)	428, 455
Bse3DI	GCAATG	2 cut(s)	1392, 1908
BseBI	CCWGG	4 cut(s)	278, 695, 769, 859
BseDI	CCNNGG	5 cut(s)	262, 544, 687, 858, 1529
BseGI	GGATG	6 cut(s)	224, 384, 441, 504, 1210, 2025
BseLI	CCNNNNNNNGG	3 cut(s)	394, 531, 621
BseMI	GCAATG	2 cut(s)	1392, 1908
BseMII	CTCAG	3 cut(s)	1146, 1394, 1873
BseNI	ACTGG	2 cut(s)	428, 455
BseRI	GAGGAG	5 cut(s)	155, 344, 395, 686, 1420
BseSI	GKGCMC	1 cut(s)	1001
BseXI	GCAGC	2 cut(s)	645, 1057
BseYI	CCCAGC	2 cut(s)	1364, 1610
BsgI	GTGCAG	1 cut(s)	1310
Bsh1236I	CGCG	5 cut(s)	321, 414, 522, 617, 647
Bsh1285I	CGRYCG	1 cut(s)	1567
BshFI	GGCC	3 cut(s)	549, 839, 857
BshNI	GGYRCC	3 cut(s)	266, 426, 580
BsiEI	CGRYCG	1 cut(s)	1567
BsiHKAI	GWGCWC	3 cut(s)	339, 577, 1412
BsiHKCI	CYCGRG	1 cut(s)	1528
BsiSI	CCGG	9 cut(s)	584, 630, 679, 687, 794, 899, 1563, 1669, 2005
BslFI	GGGAC	3 cut(s)	206, 355, 704
BslI	CCNNNNNNNGG	3 cut(s)	394, 531, 621
BsmAI	GTCTC	3 cut(s)	403, 1529, 1924
BsmFI	GGGAC	3 cut(s)	206, 355, 704
BsnI	GGCC	3 cut(s)	549, 839, 857
Bso31I	GGTCTC	2 cut(s)	403, 1924
BsoBI	CYCGRG	1 cut(s)	1528
Bsp119I	TTCGAA	1 cut(s)	1186
Bsp1286I	GDGCHC	5 cut(s)	339, 420, 577, 1001, 1412
Bsp1407I	TGTACA	2 cut(s)	5, 933
Bsp143I	GATC	7 cut(s)	453, 819, 1006, 1426, 1924, 1979, 2007
Bsp1720I	GCTNAGC	2 cut(s)	1155, 1488
BspANI	GGCC	3 cut(s)	549, 839, 857
BspCNI	CTCAG	3 cut(s)	1147, 1395, 1872
BspFNI	CGCG	5 cut(s)	321, 414, 522, 617, 647
BspHI	TCATGA	3 cut(s)	1501, 2010, 2045
BspLI	GGNNCC	5 cut(s)	268, 428, 582, 692, 1561
BspMAI	CTGCAG	1 cut(s)	663
BspPI	GGATC	3 cut(s)	461, 1919, 2015
BspT104I	TTCGAA	1 cut(s)	1186
BspT107I	GGYRCC	3 cut(s)	266, 426, 580
BspTI	CTTAAG	1 cut(s)	1508
BspTNI	GGTCTC	2 cut(s)	403, 1924
BsrBI	CCGCTC	2 cut(s)	151, 432
BsrDI	GCAATG	2 cut(s)	1392, 1908
BsrFI	RCCGGY	1 cut(s)	1562
BsrGI	TGTACA	2 cut(s)	5, 933
BsrI	ACTGG	2 cut(s)	428, 455
BssAI	RCCGGY	1 cut(s)	1562
BssECI	CCNNGG	5 cut(s)	262, 544, 687, 858, 1529
BssMI	GATC	7 cut(s)	453, 819, 1006, 1426, 1924, 1979, 2007
BssNI	GRCGYC	5 cut(s)	216, 427, 462, 581, 642
BssSI	CACGAG	1 cut(s)	652
BssT1I	CCWWGG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	652
Bst2UI	CCWGG	4 cut(s)	278, 695, 769, 859
Bst4CI	ACNGT	3 cut(s)	735, 907, 1894
Bst6I	CTCTTC	3 cut(s)	770, 1298, 1569
BstACI	GRCGYC	5 cut(s)	216, 427, 462, 581, 642
BstAFI	CTTAAG	1 cut(s)	1508
BstAPI	GCANNNNNTGC	1 cut(s)	1297
BstAUI	TGTACA	2 cut(s)	5, 933
BstBAI	YACGTR	1 cut(s)	1227
BstBI	TTCGAA	1 cut(s)	1186
BstC8I	GCNNGC	5 cut(s)	257, 416, 1001, 1496, 1966
BstDEI	CTNAG	4 cut(s)	1155, 1403, 1488, 1859
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	6 cut(s)	224, 384, 441, 504, 1210, 2025
BstFNI	CGCG	5 cut(s)	321, 414, 522, 617, 647
BstH2I	RGCGCY	4 cut(s)	430, 584, 1495, 1516
BstHHI	GCGC	8 cut(s)	323, 429, 524, 567, 583, 649, 1494, 1515
BstKTI	GATC	7 cut(s)	456, 822, 1009, 1429, 1927, 1982, 2010
BstMAI	GTCTC	3 cut(s)	403, 1529, 1924
BstMBI	GATC	7 cut(s)	453, 819, 1006, 1426, 1924, 1979, 2007
BstMCI	CGRYCG	1 cut(s)	1567
BstMWI	GCNNNNNNNGC	7 cut(s)	252, 424, 655, 1064, 1297, 1504, 1607
BstNI	CCWGG	4 cut(s)	278, 695, 769, 859
BstNSI	RCATGY	1 cut(s)	637
BstSCI	CCNGG	6 cut(s)	276, 678, 686, 693, 767, 857
BstSFI	CTRYAG	1 cut(s)	659
BstSLI	GKGCMC	1 cut(s)	1001
BstUI	CGCG	5 cut(s)	321, 414, 522, 617, 647
BstV1I	GCAGC	2 cut(s)	645, 1057
BstV2I	GAAGAC	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	1742
BsuI	GTATCC	2 cut(s)	895, 1712
BsuRI	GGCC	3 cut(s)	549, 839, 857
BtgI	CCRYGG	1 cut(s)	544
BtgZI	GCGATG	1 cut(s)	1164
BtrI	CACGTC	1 cut(s)	1017
BtsCI	GGATG	6 cut(s)	224, 384, 441, 504, 1210, 2025
BtsI	GCAGTG	1 cut(s)	536
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	5 cut(s)	257, 416, 1001, 1496, 1966
CciI	TCATGA	3 cut(s)	1501, 2010, 2045
CfoI	GCGC	8 cut(s)	323, 429, 524, 567, 583, 649, 1494, 1515
Cfr10I	RCCGGY	1 cut(s)	1562
Cfr13I	GGNCC	4 cut(s)	280, 586, 676, 691
CpoI	CGGWCCG	1 cut(s)	586
CseI	GACGC	4 cut(s)	224, 277, 650, 928
CsiI	ACCWGGT	1 cut(s)	693
Csp6I	GTAC	3 cut(s)	6, 934, 1228
CspI	CGGWCCG	1 cut(s)	586
CviQI	GTAC	3 cut(s)	6, 934, 1228
DdeI	CTNAG	4 cut(s)	1155, 1403, 1488, 1859
DinI	GGCGCC	2 cut(s)	428, 582
DpnI	GATC	7 cut(s)	455, 821, 1008, 1428, 1926, 1981, 2009
DpnII	GATC	7 cut(s)	453, 819, 1006, 1426, 1924, 1979, 2007
DraIII	CACNNNGTG	1 cut(s)	1017
DrdI	GACNNNNNNGTC	1 cut(s)	287
DriI	GACNNNNNGTC	1 cut(s)	682
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eam1104I	CTCTTC	3 cut(s)	770, 1298, 1569
Eam1105I	GACNNNNNGTC	1 cut(s)	682
EarI	CTCTTC	3 cut(s)	770, 1298, 1569
EciI	GGCGGA	1 cut(s)	158
Ecl136II	GAGCTC	2 cut(s)	575, 1410
Eco130I	CCWWGG	1 cut(s)	262
Eco24I	GRGCYC	3 cut(s)	420, 577, 1412
Eco31I	GGTCTC	2 cut(s)	403, 1924
Eco47I	GGWCC	4 cut(s)	280, 586, 676, 691
Eco47III	AGCGCT	1 cut(s)	1493
Eco53kI	GAGCTC	2 cut(s)	575, 1410
Eco57I	CTGAAG	2 cut(s)	794, 890
Eco88I	CYCGRG	1 cut(s)	1528
EcoICRI	GAGCTC	2 cut(s)	575, 1410
EcoO109I	RGGNCCY	1 cut(s)	691
EcoRI	GAATTC	1 cut(s)	1311
EcoRII	CCWGG	4 cut(s)	276, 693, 767, 857
EcoT14I	CCWWGG	1 cut(s)	262
EcoT38I	GRGCYC	3 cut(s)	420, 577, 1412
EgeI	GGCGCC	2 cut(s)	428, 582
EheI	GGCGCC	2 cut(s)	428, 582
ErhI	CCWWGG	1 cut(s)	262
FalI	AAGNNNNNCTT	1 cut(s)	2020
FaqI	GGGAC	3 cut(s)	206, 355, 704
FauI	CCCGC	4 cut(s)	251, 380, 419, 1008
FauNDI	CATATG	1 cut(s)	1762
FbaI	TGATCA	2 cut(s)	819, 1426
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	6 cut(s)	253, 430, 645, 659, 1046, 1383
FokI	GGATG	6 cut(s)	211, 371, 428, 491, 1217, 2032
FriOI	GRGCYC	3 cut(s)	420, 577, 1412
Fsp4HI	GCNGC	6 cut(s)	253, 430, 645, 659, 1046, 1383
FspBI	CTAG	2 cut(s)	726, 1748
GlaI	GCGC	8 cut(s)	322, 428, 523, 566, 582, 648, 1493, 1514
GluI	GCNGC	6 cut(s)	253, 430, 645, 659, 1046, 1383
GsaI	CCCAGC	2 cut(s)	1368, 1614
GsuI	CTGGAG	2 cut(s)	206, 1578
HaeII	RGCGCY	4 cut(s)	430, 584, 1495, 1516
HaeIII	GGCC	3 cut(s)	549, 839, 857
HapII	CCGG	9 cut(s)	584, 630, 679, 687, 794, 899, 1563, 1669, 2005
HgaI	GACGC	4 cut(s)	224, 277, 650, 928
HhaI	GCGC	8 cut(s)	323, 429, 524, 567, 583, 649, 1494, 1515
Hin1I	GRCGYC	5 cut(s)	216, 427, 462, 581, 642
Hin6I	GCGC	8 cut(s)	321, 427, 522, 565, 581, 647, 1492, 1513
HinP1I	GCGC	8 cut(s)	321, 427, 522, 565, 581, 647, 1492, 1513
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	2 cut(s)	145, 1997
HpaII	CCGG	9 cut(s)	584, 630, 679, 687, 794, 899, 1563, 1669, 2005
HphI	GGTGA	5 cut(s)	113, 119, 298, 604, 1630
Hpy166II	GTNNAC	2 cut(s)	6, 292
Hpy188I	TCNGA	4 cut(s)	979, 1443, 1837, 1924
Hpy188III	TCNNGA	7 cut(s)	185, 1012, 1502, 1528, 1662, 2011, 2046
Hpy8I	GTNNAC	2 cut(s)	6, 292
Hpy99I	CGWCG	9 cut(s)	218, 293, 464, 467, 560, 644, 922, 1018, 1342
HpyCH4III	ACNGT	3 cut(s)	735, 907, 1894
HpyCH4IV	ACGT	5 cut(s)	462, 498, 513, 1016, 1226
HpyF10VI	GCNNNNNNNGC	7 cut(s)	252, 424, 655, 1064, 1297, 1504, 1607
HpyF3I	CTNAG	4 cut(s)	1155, 1403, 1488, 1859
HpySE526I	ACGT	5 cut(s)	462, 498, 513, 1016, 1226
Hsp92I	GRCGYC	5 cut(s)	216, 427, 462, 581, 642
HspAI	GCGC	8 cut(s)	321, 427, 522, 565, 581, 647, 1492, 1513
KasI	GGCGCC	2 cut(s)	426, 580
Ksp22I	TGATCA	2 cut(s)	819, 1426
Kzo9I	GATC	7 cut(s)	453, 819, 1006, 1426, 1924, 1979, 2007
LmnI	GCTCC	7 cut(s)	156, 264, 437, 1083, 1210, 1407, 1559
Lsp1109I	GCAGC	2 cut(s)	645, 1057
LweI	GCATC	6 cut(s)	1141, 1182, 1783, 1800, 1960, 1977
MabI	ACCWGGT	1 cut(s)	693
MaeI	CTAG	2 cut(s)	726, 1748
MaeII	ACGT	5 cut(s)	462, 498, 513, 1016, 1226
MaeIII	GTNAC	3 cut(s)	1121, 1222, 1770
MalI	GATC	7 cut(s)	455, 821, 1008, 1428, 1926, 1981, 2009
MbiI	CCGCTC	2 cut(s)	151, 432
MboI	GATC	7 cut(s)	453, 819, 1006, 1426, 1924, 1979, 2007
MhlI	GDGCHC	5 cut(s)	339, 420, 577, 1001, 1412
MluCI	AATT	6 cut(s)	101, 1311, 1370, 1542, 1681, 1842
Mly113I	GGCGCC	2 cut(s)	427, 581
MlyI	GAGTC	1 cut(s)	139
MmeI	TCCRAC	1 cut(s)	74
MroXI	GAANNNNTTC	1 cut(s)	1173
MseI	TTAA	3 cut(s)	1509, 1887, 1992
MslI	CAYNNNNRTG	1 cut(s)	1691
MspA1I	CMGCKG	1 cut(s)	1048
MspCI	CTTAAG	1 cut(s)	1508
MspI	CCGG	9 cut(s)	584, 630, 679, 687, 794, 899, 1563, 1669, 2005
MspR9I	CCNGG	6 cut(s)	278, 680, 688, 695, 769, 859
MvaI	CCWGG	4 cut(s)	278, 695, 769, 859
MvnI	CGCG	5 cut(s)	321, 414, 522, 617, 647
MwoI	GCNNNNNNNGC	7 cut(s)	252, 424, 655, 1064, 1297, 1504, 1607
NarI	GGCGCC	2 cut(s)	427, 581
NciI	CCSGG	2 cut(s)	680, 688
NdeI	CATATG	1 cut(s)	1762
NdeII	GATC	7 cut(s)	453, 819, 1006, 1426, 1924, 1979, 2007
NlaIV	GGNNCC	5 cut(s)	268, 428, 582, 692, 1561
NmuCI	GTSAC	1 cut(s)	1222
NspI	RCATGY	1 cut(s)	637
NspV	TTCGAA	1 cut(s)	1186
PagI	TCATGA	3 cut(s)	1501, 2010, 2045
PcsI	WCGNNNNNNNCGW	5 cut(s)	297, 444, 495, 552, 1232
PdmI	GAANNNNTTC	1 cut(s)	1173
PfeI	GAWTC	1 cut(s)	1997
PflFI	GACNNNGTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	531
PfoI	TCCNGGA	1 cut(s)	276
PkrI	GCNGC	6 cut(s)	254, 431, 646, 660, 1047, 1384
PleI	GAGTC	1 cut(s)	139
PluTI	GGCGCC	2 cut(s)	430, 584
PpsI	GAGTC	1 cut(s)	139
Ppu21I	YACGTR	1 cut(s)	1227
PpuMI	RGGWCCY	1 cut(s)	691
PsiI	TTATAA	1 cut(s)	810
Psp124BI	GAGCTC	2 cut(s)	577, 1412
Psp1406I	AACGTT	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	691
Psp6I	CCWGG	4 cut(s)	276, 693, 767, 857
PspFI	CCCAGC	2 cut(s)	1364, 1610
PspGI	CCWGG	4 cut(s)	276, 693, 767, 857
PspN4I	GGNNCC	5 cut(s)	268, 428, 582, 692, 1561
PspPI	GGNCC	4 cut(s)	280, 586, 676, 691
PspPPI	RGGWCCY	1 cut(s)	691
PstI	CTGCAG	1 cut(s)	663
PsyI	GACNNNGTC	1 cut(s)	218
PvuII	CAGCTG	1 cut(s)	1048
RsaI	GTAC	3 cut(s)	7, 935, 1229
RsaNI	GTAC	3 cut(s)	6, 934, 1228
RseI	CAYNNNNRTG	1 cut(s)	1691
Rsr2I	CGGWCCG	1 cut(s)	586
RsrII	CGGWCCG	1 cut(s)	586
SacI	GAGCTC	2 cut(s)	577, 1412
SalI	GTCGAC	1 cut(s)	290
SaqAI	TTAA	3 cut(s)	1509, 1887, 1992
SatI	GCNGC	6 cut(s)	253, 430, 645, 659, 1046, 1383
Sau3AI	GATC	7 cut(s)	453, 819, 1006, 1426, 1924, 1979, 2007
Sau96I	GGNCC	4 cut(s)	280, 586, 676, 691
SchI	GAGTC	1 cut(s)	139
ScrFI	CCNGG	6 cut(s)	278, 680, 688, 695, 769, 859
SduI	GDGCHC	5 cut(s)	339, 420, 577, 1001, 1412
SexAI	ACCWGGT	1 cut(s)	693
SfaNI	GCATC	6 cut(s)	1141, 1182, 1783, 1800, 1960, 1977
SfcI	CTRYAG	1 cut(s)	659
SfoI	GGCGCC	2 cut(s)	428, 582
SfuI	TTCGAA	1 cut(s)	1186
SinI	GGWCC	4 cut(s)	280, 586, 676, 691
SmiMI	CAYNNNNRTG	1 cut(s)	1691
SmlI	CTYRAG	4 cut(s)	1103, 1262, 1508, 1660
SmoI	CTYRAG	4 cut(s)	1103, 1262, 1508, 1660
Sse9I	AATT	6 cut(s)	101, 1311, 1370, 1542, 1681, 1842
SspDI	GGCGCC	2 cut(s)	426, 580
SspI	AATATT	1 cut(s)	1024
SspMI	CTAG	2 cut(s)	726, 1748
SstI	GAGCTC	2 cut(s)	577, 1412
StyD4I	CCNGG	6 cut(s)	276, 678, 686, 693, 767, 857
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	3 cut(s)	735, 907, 1894
TaiI	ACGT	5 cut(s)	465, 501, 516, 1019, 1229
TasI	AATT	6 cut(s)	101, 1311, 1370, 1542, 1681, 1842
TatI	WGTACW	2 cut(s)	5, 933
TauI	GCSGC	4 cut(s)	255, 432, 647, 1385
TfiI	GAWTC	1 cut(s)	1997
Tru1I	TTAA	3 cut(s)	1509, 1887, 1992
Tru9I	TTAA	3 cut(s)	1509, 1887, 1992
TscAI	CASTG	1 cut(s)	536
TseFI	GTSAC	1 cut(s)	1222
TseI	GCWGC	2 cut(s)	658, 1045
Tsp45I	GTSAC	1 cut(s)	1222
TspGWI	ACGGA	2 cut(s)	472, 1583
TspRI	CASTG	1 cut(s)	536
Tth111I	GACNNNGTC	1 cut(s)	218
Van91I	CCANNNNNTGG	1 cut(s)	531
Vha464I	CTTAAG	1 cut(s)	1508
VpaK11BI	GGWCC	4 cut(s)	280, 586, 676, 691
XapI	RAATTY	2 cut(s)	1311, 1842
XceI	RCATGY	1 cut(s)	637
XcmI	CCANNNNNNNNNTGG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	1173
XspI	CTAG	2 cut(s)	726, 1748
ZraI	GACGTC	1 cut(s)	463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.