Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0013505

Physical Location & Seq

Genomic Coordinates Reverse (-)

32587981 .. 32588256

Gene Structure 276 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAATTTTCTTTCTTCACCACCCACAAAGCCGTACTCGCTTCCTCCTTATCTCCACCGCTTCCAAAGATGCCGGAGAAGAACACCCCACCCCAAAAAGACGCCGTCCCAACCATCGGAACCATTCCGCCACCACCGCAAGCTCCGCGGCACCACCTTCCCGGACCACGGCGTCAACATGGATGACCTCACCGCCTCAATCCGCGCCACCCAAAACGAGCACGACCTCAACTCCTCCTCTTCCCCTTCAAGTCCATGGCTGGGTTCATCGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

91

Amino Acids

10.45

Weight (kDa)

10.88

Isoelectric Point (pI)

74.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39980
fragaria_vesca	FvH4_6g49520
malus_domestica	MD09G1044200.v1.1
prunus_persica	Prupe.3G273600_v2.0.a1
pyrus_communis	pycom111g03450
rosa_chinensis	RchiOBHm_Chr2g0169431
rosa_laevigata	RLG00000021863
rosa_multiflora	Rmu_co8342305.1_g000001 Rmu_sc0004665.1_g000014 Rmu_sc0004665.1_g000015 Rmu_sc0006806.1_g000040
rosa_roxburghii	Rroxscaffold_2G00082130 Rroxscaffold_3G00240790
rosa_samantha	Rh2AG611300 Rh2BG624900 Rh2CG593300 Rh2DG635500
rosa_wichuraiana	Rw2G050730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	170
AccB1I	GGYRCC	1 cut(s)	149
AccII	CGCG	3 cut(s)	147, 204, 271
AciI	CCGC	7 cut(s)	58, 127, 136, 145, 147, 192, 202
AcsI	RAATTY	1 cut(s)	4
AcyI	GRCGYC	2 cut(s)	101, 171
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	3 cut(s)	115, 167, 260
AgsI	TTSAA	1 cut(s)	249
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
Alw21I	GWGCWC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	4
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	163
AsuC2I	CCSGG	1 cut(s)	161
AsuHPI	GGTGA	2 cut(s)	9, 181
AvaII	GGWCC	1 cut(s)	163
BanI	GGYRCC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	222
BccI	CCATC	1 cut(s)	121
BceAI	ACGGC	3 cut(s)	16, 88, 184
BcnI	CCSGG	1 cut(s)	161
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme1390I	CCNGG	1 cut(s)	161
Bme18I	GGWCC	1 cut(s)	163
BmgT120I	GGNCC	1 cut(s)	163
BmiI	GGNNCC	2 cut(s)	120, 151
BmrFI	CCNGG	1 cut(s)	161
BmsI	GCATC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	161
BsaHI	GRCGYC	2 cut(s)	101, 171
BsaJI	CCNNGG	3 cut(s)	145, 166, 254
BsaXI	ACNNNNNCTCC	2 cut(s)	215, 245
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 167, 260
BseDI	CCNNGG	3 cut(s)	145, 166, 254
BseGI	GGATG	1 cut(s)	187
BseLI	CCNNNNNNNGG	3 cut(s)	115, 167, 260
BseRI	GAGGAG	2 cut(s)	223, 226
BseYI	CCCAGC	1 cut(s)	259
Bsh1236I	CGCG	3 cut(s)	147, 204, 271
BshNI	GGYRCC	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	222
BsiSI	CCGG	2 cut(s)	73, 161
BslFI	GGGAC	1 cut(s)	91
BslI	CCNNNNNNNGG	3 cut(s)	115, 167, 260
BsmFI	GGGAC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	222
Bsp19I	CCATGG	1 cut(s)	254
Bsp68I	TCGCGA	1 cut(s)	271
BspACI	CCGC	7 cut(s)	58, 127, 136, 145, 147, 192, 202
BspFNI	CGCG	3 cut(s)	147, 204, 271
BspLI	GGNNCC	2 cut(s)	120, 151
BspT107I	GGYRCC	1 cut(s)	149
BssECI	CCNNGG	3 cut(s)	145, 166, 254
BssNI	GRCGYC	2 cut(s)	101, 171
BssT1I	CCWWGG	1 cut(s)	254
Bst6I	CTCTTC	1 cut(s)	244
BstACI	GRCGYC	2 cut(s)	101, 171
BstC8I	GCNNGC	1 cut(s)	140
BstDSI	CCRYGG	3 cut(s)	145, 166, 254
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	3 cut(s)	147, 204, 271
BstHHI	GCGC	1 cut(s)	206
BstMWI	GCNNNNNNNGC	3 cut(s)	37, 135, 144
BstSCI	CCNGG	1 cut(s)	159
BstUI	CGCG	3 cut(s)	147, 204, 271
BtgI	CCRYGG	3 cut(s)	145, 166, 254
BtgZI	GCGATG	1 cut(s)	252
BtsCI	GGATG	1 cut(s)	187
BtuMI	TCGCGA	1 cut(s)	271
Cac8I	GCNNGC	1 cut(s)	140
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	1 cut(s)	163
Cfr42I	CCGCGG	1 cut(s)	148
CseI	GACGC	2 cut(s)	109, 160
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	178, 255
CviJI	RGCY	3 cut(s)	31, 142, 259
CviKI_1	RGCY	3 cut(s)	31, 142, 259
CviQI	GTAC	1 cut(s)	34
DrdI	GACNNNNNNGTC	1 cut(s)	170
DseDI	GACNNNNNNGTC	1 cut(s)	170
Eam1104I	CTCTTC	1 cut(s)	244
EarI	CTCTTC	1 cut(s)	244
EciI	GGCGGA	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	163
EcoT14I	CCWWGG	1 cut(s)	254
ErhI	CCWWGG	1 cut(s)	254
FaeI	CATG	2 cut(s)	181, 258
FaiI	YATR	2 cut(s)	179, 256
FaqI	GGGAC	1 cut(s)	91
FatI	CATG	2 cut(s)	177, 254
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	148
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	1 cut(s)	148
GsaI	CCCAGC	1 cut(s)	263
HapII	CCGG	2 cut(s)	73, 161
HgaI	GACGC	2 cut(s)	109, 160
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	2 cut(s)	101, 171
Hin1II	CATG	2 cut(s)	181, 258
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HpaII	CCGG	2 cut(s)	73, 161
HphI	GGTGA	2 cut(s)	9, 181
Hpy166II	GTNNAC	1 cut(s)	175
Hpy188I	TCNGA	1 cut(s)	118
Hpy188III	TCNNGA	1 cut(s)	270
Hpy8I	GTNNAC	1 cut(s)	175
HpyAV	CCTTC	2 cut(s)	166, 255
HpyF10VI	GCNNNNNNNGC	3 cut(s)	37, 135, 144
Hsp92I	GRCGYC	2 cut(s)	101, 171
Hsp92II	CATG	2 cut(s)	181, 258
HspAI	GCGC	1 cut(s)	204
KspI	CCGCGG	1 cut(s)	148
LmnI	GCTCC	1 cut(s)	147
LpnPI	CCDG	3 cut(s)	86, 174, 245
LweI	GCATC	1 cut(s)	59
MboII	GAAGA	3 cut(s)	6, 90, 231
MhlI	GDGCHC	1 cut(s)	222
MluCI	AATT	1 cut(s)	4
MnlI	CCTC	6 cut(s)	54, 197, 205, 236, 244, 247
MspA1I	CMGCKG	1 cut(s)	147
MspI	CCGG	2 cut(s)	73, 161
MspR9I	CCNGG	1 cut(s)	161
MvnI	CGCG	3 cut(s)	147, 204, 271
MwoI	GCNNNNNNNGC	3 cut(s)	37, 135, 144
NciI	CCSGG	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	254
NlaIII	CATG	2 cut(s)	181, 258
NlaIV	GGNNCC	2 cut(s)	120, 151
NruI	TCGCGA	1 cut(s)	271
PflFI	GACNNNGTC	1 cut(s)	103
PfoI	TCCNGGA	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	149
PspFI	CCCAGC	1 cut(s)	259
PspN4I	GGNNCC	2 cut(s)	120, 151
PspPI	GGNCC	1 cut(s)	163
PsyI	GACNNNGTC	1 cut(s)	103
RruI	TCGCGA	1 cut(s)	271
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SacII	CCGCGG	1 cut(s)	148
SatI	GCNGC	1 cut(s)	148
Sau96I	GGNCC	1 cut(s)	163
ScrFI	CCNGG	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	4 cut(s)	144, 158, 189, 228
SfaNI	GCATC	1 cut(s)	59
Sfr303I	CCGCGG	1 cut(s)	148
SgrBI	CCGCGG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	4
SsiI	CCGC	7 cut(s)	58, 127, 136, 145, 147, 192, 202
StyD4I	CCNGG	1 cut(s)	159
StyI	CCWWGG	1 cut(s)	254
TasI	AATT	1 cut(s)	4
TauI	GCSGC	1 cut(s)	150
TspDTI	ATGAA	2 cut(s)	17, 255
Tth111I	GACNNNGTC	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	163
XapI	RAATTY	1 cut(s)	4

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.