Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0013505

Physical Location & Seq

Genomic Coordinates Forward (+)

78897297 .. 78899315

Gene Structure 2019 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021863

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2019 bp

ATGCAAGGATCTCCATGTTCACCTCCTTCTTCTTCCTTCTCATTTCCACTACTACCCCCCACCAAACCCCACAATTCCACCGGCCCCCTACTCTTCACCTTCACCACCCACAAACCCAGACTCCGCTCCTCCCCCCTTATCTCCTCCGCTTCCAAAGATGTCTGGAGAAGAACACCACCACATCCCCAAACGACGCCGTCCCAACCCTCCCCCCGCCACCGCCGCAAGCTCCAAGGCACCACCTTCCTGGACCACAGCGTCGACATGGACGACCTCACCGCCTCAATCCGCGCCACCCAAAACGAGCACGACCTCAACTCTCTTCTCTCCCCCTACAAGTCCCGCAACCTCTCCATCCGCTTCATGGTCTCCCTCCTCTCCCGCGAGCCCGACTGGCGCCGCTCCCTCGCCATCCTCGACTGGATCAACGACGTCGCCCTATACTCTCCCTCCGTCTTCGCCTACAACGTCGTCATCCGCAACGTCCTACGCGCCAAGCAGTGGGAAGTCGCCCACGGCCTGTTCGACGAAATGCGCCACAGAGCTCTGGCGCCGGACCGCTACACTTACTCCACTCTCATCACCGCGTTTGGGAAGTCCGGCATGTTCGACGCCGCGCTCTCGTGGCTGCAGAAGATGGAGGAGGACCGGGTGTCCGGCGACCTGGTGCTGTTTAGCAACTTGATTGAGCTGTCTAGGAAACTGTGTGATTATAGCAAAGCGATTTCGATATTTTCCAGGCTGAAGAGGTTGGGGATAATGCCGGATTTGGTGGCTTATAACTCGATGATCAATGTGTTTGGTAAGGCCAAGTTGTTTAGGGAGGCCAGGGTTTTGCTGAAGGAGATGAGGGCGGTGGGGGTTTTGCCTGATACTGTTAGCTATTCGACGCTTTTGACAATGTACATTGAGAATGAGAAGTTTGTGGAGGCGTTGGCTGTGTTCTCGGAGATGAATGAGGTCAAGTGTCCGCTTGATCTCACCACGTGTAATATTATGATTGATGTTTATGGGCAGCTGGATATGGCGAAGGAGGCTGATAGGTTGTTTTGGAGCATGAGGAAGATGGGGCTTGAGCCGAATGTTGTTAGTTACAATACTCTTTTGAGGGTTTATGGCGATGCTGAGCTTTTCGGGGAAGCCATTCATCTTTTTCGAATGATGCAGAGAATGGATGTGGAGCAGAATGTTGTCACGTACAATACGATGATTAGGATTTATGGGAAGTCGCTTGAGCATGAAAAGGCTACAAATCTTGTGCAGGAAATGCAGAAGAGGGGGATTCAGCCGAATGCCATTACATACTCGACGATTATATCTATATGGGGTAGGGCTGGGAAATTGGACAGGGCGGCAATGCTGTTTCAAAAGCTGAGGACCTCTGGGGTTGAGATTGATCAGGTTCTTTATCAGACAATGATTGTATCTTATGAGAGAGTAGGTTTGGTTGCTCATGCTAAGCGCTTGCTTCATGAGCTTAAGCGCCCAGACAATATCCCGAGGGAGACTGCAATTACCATTCTTGCTGGTGCCGGTCGTGTGGAAGAGGCTACATGGGTTTTCCGTCAGGCTTTTGAGGCTGGGGAGGTGAAGGATATATCTGTGTTTGGTTGTATGATTGATCTTTTCTCAAGAAACCGAAAGTATGCAAATTGCATTGAAGTGTTTGAGAATATGCGAGTGGCAGGATACTTTCCTGCTTCCCATGTGATTGGTCTAGTTCTCAACGCTTATGGAAAGTTACGGGAGTTTGAGAAGGCTGATGCTGTATATAGGGAGATGCAGGAAGAAGGGTGTGTTTTCTCTGATGAAATTCACTTCCAAATGCTCAGTCTTTATGGTGCTAGAAAGGACTTTAAGACGGTAGAGGCAATGTTTGAGAGGCTGGTCTCCGATCCCAACATCAACAAAAAGGAGTTGCATCTTGTTGTTGCCGGCATCTATGAAAGATCAAACAGACTTAATGATTCATACCGGATCATGAACAGGATGAATGAAAGTCGAGCTTTGAAATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009941 GO:0009987 GO:0010467 GO:0016043 GO:0016070 GO:0016787 GO:0016788 GO:0031425 GO:0031967 GO:0031975 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

673

Amino Acids

76.96

Weight (kDa)

9.07

Isoelectric Point (pI)

35.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	150 - 199	1.2e-13	PPR repeat family
PPR	PF01535	188 - 217	1.1e-06	PPR repeat
PPR_3	PF13812	210 - 269	2.1e-07	Pentatricopeptide repeat domain
PPR_long	PF17177	239 - 323	4.2e-06	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	252 - 284	5.2e-06	PPR repeat
PPR_2	PF13041	255 - 301	4.5e-11	PPR repeat family
PPR	PF01535	258 - 287	2.6e-06	PPR repeat
PPR_3	PF13812	279 - 339	5.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	290 - 336	3.9e-10	PPR repeat family
PPR_3	PF13812	325 - 374	2.8e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	326 - 371	2.8e-10	PPR repeat family
PPR_long	PF17177	348 - 509	2e-11	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	360 - 405	2.3e-11	PPR repeat family
PPR_3	PF13812	384 - 443	5.9e-12	Pentatricopeptide repeat domain
PPR_2	PF13041	396 - 440	6.2e-15	PPR repeat family
PPR	PF01535	398 - 428	5e-07	PPR repeat
PPR_1	PF12854	426 - 457	2.9e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013505)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39980
fragaria_vesca	FvH4_6g49520
malus_domestica	MD09G1044200.v1.1
prunus_persica	Prupe.3G273600_v2.0.a1
pyrus_communis	pycom111g03450
rosa_chinensis	RchiOBHm_Chr2g0169431
rosa_laevigata	RLG00000021863
rosa_multiflora	Rmu_co8342305.1_g000001 Rmu_sc0004665.1_g000014 Rmu_sc0004665.1_g000015 Rmu_sc0006806.1_g000040
rosa_roxburghii	Rroxscaffold_2G00082130 Rroxscaffold_3G00240790
rosa_samantha	Rh2AG611300 Rh2BG624900 Rh2CG593300 Rh2DG635500
rosa_wichuraiana	Rw2G050730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	780
AasI	GACNNNNNNGTC	1 cut(s)	257
AatII	GACGTC	1 cut(s)	435
AccB1I	GGYRCC	4 cut(s)	236, 396, 550, 1529
AccB7I	CCANNNNNTGG	1 cut(s)	501
AccBSI	CCGCTC	2 cut(s)	126, 402
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	5 cut(s)	291, 384, 492, 587, 617
AclWI	GGATC	4 cut(s)	16, 431, 1889, 1985
AcsI	RAATTY	1 cut(s)	1812
AcuI	CTGAAG	2 cut(s)	764, 860
AcvI	CACGTG	1 cut(s)	987
AcyI	GRCGYC	5 cut(s)	194, 397, 432, 551, 612
AdeI	CACNNNGTG	1 cut(s)	987
AfaI	GTAC	2 cut(s)	905, 1199
AfeI	AGCGCT	1 cut(s)	1463
AfiI	CCNNNNNNNGG	3 cut(s)	364, 501, 591
AflII	CTTAAG	1 cut(s)	1478
AflIII	ACRYGT	1 cut(s)	986
AgsI	TTSAA	3 cut(s)	1367, 1661, 2011
AhdI	GACNNNNNGTC	1 cut(s)	652
AjnI	CCWGG	4 cut(s)	246, 663, 737, 827
AluBI	AGCT	9 cut(s)	229, 545, 691, 882, 1018, 1129, 1372, 1477, 2006
AluI	AGCT	9 cut(s)	229, 545, 691, 882, 1018, 1129, 1372, 1477, 2006
Alw21I	GWGCWC	2 cut(s)	309, 547
Alw26I	GTCTC	3 cut(s)	373, 1499, 1894
AlwI	GGATC	4 cut(s)	16, 431, 1889, 1985
Ama87I	CYCGRG	1 cut(s)	1498
Aor51HI	AGCGCT	1 cut(s)	1463
AoxI	GGCC	4 cut(s)	82, 517, 807, 825
ApeKI	GCWGC	2 cut(s)	628, 1015
ApoI	RAATTY	1 cut(s)	1812
ArsI	GACNNNNNNTTYG	2 cut(s)	1816, 1848
Asp700I	GAANNNNTTC	1 cut(s)	1143
AspLEI	GCGC	8 cut(s)	293, 399, 494, 537, 553, 619, 1464, 1485
AspS9I	GGNCC	5 cut(s)	83, 250, 556, 646, 1377
AsuC2I	CCSGG	1 cut(s)	650
AsuHPI	GGTGA	7 cut(s)	12, 88, 94, 268, 574, 973, 1600
AsuII	TTCGAA	1 cut(s)	1156
AvaI	CYCGRG	1 cut(s)	1498
AvaII	GGWCC	4 cut(s)	250, 556, 646, 1377
BanI	GGYRCC	4 cut(s)	236, 396, 550, 1529
BanII	GRGCYC	2 cut(s)	390, 547
BauI	CACGAG	1 cut(s)	622
BbrPI	CACGTG	1 cut(s)	987
BbsI	GAAGAC	1 cut(s)	448
Bbv12I	GWGCWC	2 cut(s)	309, 547
BbvCI	CCTCAGC	1 cut(s)	1373
BbvI	GCAGC	2 cut(s)	615, 1027
BccI	CCATC	4 cut(s)	362, 419, 631, 1060
BceAI	ACGGC	2 cut(s)	181, 532
BciT130I	CCWGG	4 cut(s)	248, 665, 739, 829
BciVI	GTATCC	1 cut(s)	1682
BclI	TGATCA	2 cut(s)	789, 1396
BcnI	CCSGG	1 cut(s)	650
BcoDI	GTCTC	3 cut(s)	373, 1499, 1894
BfaI	CTAG	3 cut(s)	696, 1718, 1845
BfmI	CTRYAG	1 cut(s)	629
BfoI	RGCGCY	4 cut(s)	400, 554, 1465, 1486
BfrI	CTTAAG	1 cut(s)	1478
BfuI	GTATCC	1 cut(s)	1682
BglI	GCCNNNNNGGC	1 cut(s)	394
BisI	GCNGC	6 cut(s)	223, 400, 615, 629, 1016, 1353
BlpI	GCTNAGC	2 cut(s)	1125, 1458
BlsI	GCNGC	6 cut(s)	224, 401, 616, 630, 1017, 1354
Bme1390I	CCNGG	5 cut(s)	248, 650, 665, 739, 829
Bme18I	GGWCC	4 cut(s)	250, 556, 646, 1377
BmeRI	GACNNNNNGTC	1 cut(s)	652
BmeT110I	CYCGRG	1 cut(s)	1498
BmgT120I	GGNCC	5 cut(s)	83, 250, 556, 646, 1377
BmiI	GGNNCC	5 cut(s)	85, 238, 398, 552, 1531
BmrFI	CCNGG	5 cut(s)	248, 650, 665, 739, 829
BmsI	GCATC	6 cut(s)	1111, 1152, 1753, 1770, 1930, 1947
BpiI	GAAGAC	1 cut(s)	448
BpmI	CTGGAG	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	1373
Bpu1102I	GCTNAGC	2 cut(s)	1125, 1458
Bpu14I	TTCGAA	1 cut(s)	1156
BpuEI	CTTGAG	3 cut(s)	1094, 1253, 1615
BpuMI	CCSGG	1 cut(s)	650
BsaAI	YACGTR	2 cut(s)	987, 1197
BsaHI	GRCGYC	5 cut(s)	194, 397, 432, 551, 612
BsaI	GGTCTC	2 cut(s)	373, 1894
BsaJI	CCNNGG	4 cut(s)	232, 514, 828, 1499
BsaWI	WCCGGW	1 cut(s)	1974
BsaXI	ACNNNNNCTCC	6 cut(s)	105, 135, 434, 464, 554, 584
Bsc4I	CCNNNNNNNGG	3 cut(s)	364, 501, 591
Bse118I	RCCGGY	3 cut(s)	80, 1532, 1934
Bse1I	ACTGG	2 cut(s)	398, 425
Bse3DI	GCAATG	2 cut(s)	1362, 1878
BseBI	CCWGG	4 cut(s)	248, 665, 739, 829
BseDI	CCNNGG	4 cut(s)	232, 514, 828, 1499
BseGI	GGATG	6 cut(s)	181, 354, 411, 474, 1180, 1995
BseLI	CCNNNNNNNGG	3 cut(s)	364, 501, 591
BseMI	GCAATG	2 cut(s)	1362, 1878
BseMII	CTCAG	3 cut(s)	1116, 1364, 1843
BseNI	ACTGG	2 cut(s)	398, 425
BseRI	GAGGAG	4 cut(s)	118, 133, 365, 656
BseXI	GCAGC	2 cut(s)	615, 1027
BseYI	CCCAGC	2 cut(s)	1334, 1580
BsgI	GTGCAG	1 cut(s)	1280
Bsh1236I	CGCG	5 cut(s)	291, 384, 492, 587, 617
Bsh1285I	CGRYCG	1 cut(s)	1537
BshFI	GGCC	4 cut(s)	84, 519, 809, 827
BshNI	GGYRCC	4 cut(s)	236, 396, 550, 1529
BsiEI	CGRYCG	1 cut(s)	1537
BsiHKAI	GWGCWC	2 cut(s)	309, 547
BsiHKCI	CYCGRG	1 cut(s)	1498
BsiSI	CCGG	9 cut(s)	81, 554, 600, 649, 657, 764, 1533, 1935, 1975
BslFI	GGGAC	2 cut(s)	184, 325
BslI	CCNNNNNNNGG	3 cut(s)	364, 501, 591
BsmAI	GTCTC	3 cut(s)	373, 1499, 1894
BsmFI	GGGAC	2 cut(s)	184, 325
BsmI	GAATGC	1 cut(s)	1297
BsnI	GGCC	4 cut(s)	84, 519, 809, 827
Bso31I	GGTCTC	2 cut(s)	373, 1894
BsoBI	CYCGRG	1 cut(s)	1498
Bsp119I	TTCGAA	1 cut(s)	1156
Bsp1286I	GDGCHC	3 cut(s)	309, 390, 547
Bsp1407I	TGTACA	1 cut(s)	903
Bsp143I	GATC	9 cut(s)	8, 423, 789, 976, 1396, 1621, 1894, 1949, 1977
Bsp1720I	GCTNAGC	2 cut(s)	1125, 1458
BspANI	GGCC	4 cut(s)	84, 519, 809, 827
BspCNI	CTCAG	3 cut(s)	1117, 1365, 1842
BspFNI	CGCG	5 cut(s)	291, 384, 492, 587, 617
BspHI	TCATGA	3 cut(s)	1471, 1980, 2015
BspLI	GGNNCC	5 cut(s)	85, 238, 398, 552, 1531
BspMAI	CTGCAG	1 cut(s)	633
BspPI	GGATC	4 cut(s)	16, 431, 1889, 1985
BspT104I	TTCGAA	1 cut(s)	1156
BspT107I	GGYRCC	4 cut(s)	236, 396, 550, 1529
BspTI	CTTAAG	1 cut(s)	1478
BspTNI	GGTCTC	2 cut(s)	373, 1894
BsrBI	CCGCTC	2 cut(s)	126, 402
BsrDI	GCAATG	2 cut(s)	1362, 1878
BsrFI	RCCGGY	3 cut(s)	80, 1532, 1934
BsrGI	TGTACA	1 cut(s)	903
BsrI	ACTGG	2 cut(s)	398, 425
BssAI	RCCGGY	3 cut(s)	80, 1532, 1934
BssECI	CCNNGG	4 cut(s)	232, 514, 828, 1499
BssMI	GATC	9 cut(s)	8, 423, 789, 976, 1396, 1621, 1894, 1949, 1977
BssNI	GRCGYC	5 cut(s)	194, 397, 432, 551, 612
BssSI	CACGAG	1 cut(s)	622
BssT1I	CCWWGG	1 cut(s)	232
Bst2BI	CACGAG	1 cut(s)	622
Bst2UI	CCWGG	4 cut(s)	248, 665, 739, 829
Bst4CI	ACNGT	3 cut(s)	705, 877, 1864
Bst6I	CTCTTC	5 cut(s)	98, 327, 740, 1268, 1539
BstACI	GRCGYC	5 cut(s)	194, 397, 432, 551, 612
BstAFI	CTTAAG	1 cut(s)	1478
BstAPI	GCANNNNNTGC	1 cut(s)	1267
BstAUI	TGTACA	1 cut(s)	903
BstBAI	YACGTR	2 cut(s)	987, 1197
BstBI	TTCGAA	1 cut(s)	1156
BstC8I	GCNNGC	4 cut(s)	227, 386, 1466, 1936
BstDEI	CTNAG	4 cut(s)	1125, 1373, 1458, 1829
BstDSI	CCRYGG	1 cut(s)	514
BstF5I	GGATG	6 cut(s)	181, 354, 411, 474, 1180, 1995
BstFNI	CGCG	5 cut(s)	291, 384, 492, 587, 617
BstH2I	RGCGCY	4 cut(s)	400, 554, 1465, 1486
BstHHI	GCGC	8 cut(s)	293, 399, 494, 537, 553, 619, 1464, 1485
BstKTI	GATC	9 cut(s)	11, 426, 792, 979, 1399, 1624, 1897, 1952, 1980
BstMAI	GTCTC	3 cut(s)	373, 1499, 1894
BstMBI	GATC	9 cut(s)	8, 423, 789, 976, 1396, 1621, 1894, 1949, 1977
BstMCI	CGRYCG	1 cut(s)	1537
BstMWI	GCNNNNNNNGC	7 cut(s)	222, 394, 625, 1034, 1267, 1474, 1577
BstNI	CCWGG	4 cut(s)	248, 665, 739, 829
BstNSI	RCATGY	1 cut(s)	607
BstSCI	CCNGG	5 cut(s)	246, 648, 663, 737, 827
BstSFI	CTRYAG	1 cut(s)	629
BstUI	CGCG	5 cut(s)	291, 384, 492, 587, 617
BstV1I	GCAGC	2 cut(s)	615, 1027
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	1 cut(s)	8
BstXI	CCANNNNNNTGG	2 cut(s)	247, 1712
BstYI	RGATCY	1 cut(s)	8
BsuI	GTATCC	1 cut(s)	1682
BsuRI	GGCC	4 cut(s)	84, 519, 809, 827
BtgI	CCRYGG	1 cut(s)	514
BtgZI	GCGATG	1 cut(s)	1134
BtsCI	GGATG	6 cut(s)	181, 354, 411, 474, 1180, 1995
BtsI	GCAGTG	1 cut(s)	506
BtsIMutI	CAGTG	1 cut(s)	506
Cac8I	GCNNGC	4 cut(s)	227, 386, 1466, 1936
CciI	TCATGA	3 cut(s)	1471, 1980, 2015
CfoI	GCGC	8 cut(s)	293, 399, 494, 537, 553, 619, 1464, 1485
Cfr10I	RCCGGY	3 cut(s)	80, 1532, 1934
Cfr13I	GGNCC	5 cut(s)	83, 250, 556, 646, 1377
CpoI	CGGWCCG	1 cut(s)	556
CseI	GACGC	4 cut(s)	202, 247, 620, 898
CsiI	ACCWGGT	1 cut(s)	663
Csp6I	GTAC	2 cut(s)	904, 1198
CspI	CGGWCCG	1 cut(s)	556
CviQI	GTAC	2 cut(s)	904, 1198
DdeI	CTNAG	4 cut(s)	1125, 1373, 1458, 1829
DinI	GGCGCC	2 cut(s)	398, 552
DpnI	GATC	9 cut(s)	10, 425, 791, 978, 1398, 1623, 1896, 1951, 1979
DpnII	GATC	9 cut(s)	8, 423, 789, 976, 1396, 1621, 1894, 1949, 1977
DraIII	CACNNNGTG	1 cut(s)	987
DrdI	GACNNNNNNGTC	1 cut(s)	257
DriI	GACNNNNNGTC	1 cut(s)	652
DseDI	GACNNNNNNGTC	1 cut(s)	257
Eam1104I	CTCTTC	5 cut(s)	98, 327, 740, 1268, 1539
Eam1105I	GACNNNNNGTC	1 cut(s)	652
EarI	CTCTTC	5 cut(s)	98, 327, 740, 1268, 1539
Ecl136II	GAGCTC	1 cut(s)	545
Eco130I	CCWWGG	1 cut(s)	232
Eco24I	GRGCYC	2 cut(s)	390, 547
Eco31I	GGTCTC	2 cut(s)	373, 1894
Eco47I	GGWCC	4 cut(s)	250, 556, 646, 1377
Eco47III	AGCGCT	1 cut(s)	1463
Eco53kI	GAGCTC	1 cut(s)	545
Eco57I	CTGAAG	2 cut(s)	764, 860
Eco72I	CACGTG	1 cut(s)	987
Eco88I	CYCGRG	1 cut(s)	1498
EcoICRI	GAGCTC	1 cut(s)	545
EcoO109I	RGGNCCY	1 cut(s)	1377
EcoRII	CCWGG	4 cut(s)	246, 663, 737, 827
EcoT14I	CCWWGG	1 cut(s)	232
EcoT38I	GRGCYC	2 cut(s)	390, 547
EgeI	GGCGCC	2 cut(s)	398, 552
EheI	GGCGCC	2 cut(s)	398, 552
ErhI	CCWWGG	1 cut(s)	232
FalI	AAGNNNNNCTT	1 cut(s)	1990
FaqI	GGGAC	2 cut(s)	184, 325
FauI	CCCGC	3 cut(s)	221, 350, 389
FbaI	TGATCA	2 cut(s)	789, 1396
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	6 cut(s)	223, 400, 615, 629, 1016, 1353
FokI	GGATG	6 cut(s)	168, 341, 398, 461, 1187, 2002
FriOI	GRGCYC	2 cut(s)	390, 547
Fsp4HI	GCNGC	6 cut(s)	223, 400, 615, 629, 1016, 1353
FspBI	CTAG	3 cut(s)	696, 1718, 1845
GlaI	GCGC	8 cut(s)	292, 398, 493, 536, 552, 618, 1463, 1484
GluI	GCNGC	6 cut(s)	223, 400, 615, 629, 1016, 1353
GsaI	CCCAGC	2 cut(s)	1338, 1584
GsuI	CTGGAG	1 cut(s)	184
HaeII	RGCGCY	4 cut(s)	400, 554, 1465, 1486
HaeIII	GGCC	4 cut(s)	84, 519, 809, 827
HapII	CCGG	9 cut(s)	81, 554, 600, 649, 657, 764, 1533, 1935, 1975
HgaI	GACGC	4 cut(s)	202, 247, 620, 898
HhaI	GCGC	8 cut(s)	293, 399, 494, 537, 553, 619, 1464, 1485
Hin1I	GRCGYC	5 cut(s)	194, 397, 432, 551, 612
Hin6I	GCGC	8 cut(s)	291, 397, 492, 535, 551, 617, 1462, 1483
HinP1I	GCGC	8 cut(s)	291, 397, 492, 535, 551, 617, 1462, 1483
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	3 cut(s)	120, 1282, 1967
HpaII	CCGG	9 cut(s)	81, 554, 600, 649, 657, 764, 1533, 1935, 1975
HphI	GGTGA	7 cut(s)	12, 88, 94, 268, 574, 973, 1600
Hpy166II	GTNNAC	2 cut(s)	20, 262
Hpy188I	TCNGA	4 cut(s)	949, 1413, 1807, 1894
Hpy188III	TCNNGA	6 cut(s)	163, 1472, 1498, 1632, 1981, 2016
Hpy8I	GTNNAC	2 cut(s)	20, 262
Hpy99I	CGWCG	9 cut(s)	196, 263, 434, 437, 473, 530, 614, 892, 1312
HpyAV	CCTTC	9 cut(s)	36, 46, 109, 253, 835, 1024, 1585, 1750, 1784
HpyCH4III	ACNGT	3 cut(s)	705, 877, 1864
HpyCH4IV	ACGT	5 cut(s)	432, 468, 483, 986, 1196
HpyF10VI	GCNNNNNNNGC	7 cut(s)	222, 394, 625, 1034, 1267, 1474, 1577
HpyF3I	CTNAG	4 cut(s)	1125, 1373, 1458, 1829
HpySE526I	ACGT	5 cut(s)	432, 468, 483, 986, 1196
Hsp92I	GRCGYC	5 cut(s)	194, 397, 432, 551, 612
HspAI	GCGC	8 cut(s)	291, 397, 492, 535, 551, 617, 1462, 1483
KasI	GGCGCC	2 cut(s)	396, 550
KroI	GCCGGC	1 cut(s)	1934
KroNI	GCCGGC	1 cut(s)	1936
Ksp22I	TGATCA	2 cut(s)	789, 1396
Kzo9I	GATC	9 cut(s)	8, 423, 789, 976, 1396, 1621, 1894, 1949, 1977
LmnI	GCTCC	5 cut(s)	131, 234, 407, 1053, 1180
Lsp1109I	GCAGC	2 cut(s)	615, 1027
LweI	GCATC	6 cut(s)	1111, 1152, 1753, 1770, 1930, 1947
MabI	ACCWGGT	1 cut(s)	663
MaeI	CTAG	3 cut(s)	696, 1718, 1845
MaeII	ACGT	5 cut(s)	432, 468, 483, 986, 1196
MaeIII	GTNAC	3 cut(s)	1091, 1192, 1740
MalI	GATC	9 cut(s)	10, 425, 791, 978, 1398, 1623, 1896, 1951, 1979
MbiI	CCGCTC	2 cut(s)	126, 402
MboI	GATC	9 cut(s)	8, 423, 789, 976, 1396, 1621, 1894, 1949, 1977
MflI	RGATCY	1 cut(s)	8
MhlI	GDGCHC	3 cut(s)	309, 390, 547
MluCI	AATT	5 cut(s)	73, 1340, 1512, 1651, 1812
Mly113I	GGCGCC	2 cut(s)	397, 551
MlyI	GAGTC	1 cut(s)	114
MroNI	GCCGGC	1 cut(s)	1934
MroXI	GAANNNNTTC	1 cut(s)	1143
MseI	TTAA	3 cut(s)	1479, 1857, 1962
MslI	CAYNNNNRTG	1 cut(s)	1661
MspA1I	CMGCKG	1 cut(s)	1018
MspCI	CTTAAG	1 cut(s)	1478
MspI	CCGG	9 cut(s)	81, 554, 600, 649, 657, 764, 1533, 1935, 1975
MspR9I	CCNGG	5 cut(s)	248, 650, 665, 739, 829
Mva1269I	GAATGC	1 cut(s)	1297
MvaI	CCWGG	4 cut(s)	248, 665, 739, 829
MvnI	CGCG	5 cut(s)	291, 384, 492, 587, 617
MwoI	GCNNNNNNNGC	7 cut(s)	222, 394, 625, 1034, 1267, 1474, 1577
NaeI	GCCGGC	1 cut(s)	1936
NarI	GGCGCC	2 cut(s)	397, 551
NciI	CCSGG	1 cut(s)	650
NdeII	GATC	9 cut(s)	8, 423, 789, 976, 1396, 1621, 1894, 1949, 1977
NgoMIV	GCCGGC	1 cut(s)	1934
NlaIV	GGNNCC	5 cut(s)	85, 238, 398, 552, 1531
NmuCI	GTSAC	1 cut(s)	1192
NspI	RCATGY	1 cut(s)	607
NspV	TTCGAA	1 cut(s)	1156
PagI	TCATGA	3 cut(s)	1471, 1980, 2015
PcsI	WCGNNNNNNNCGW	5 cut(s)	267, 414, 465, 522, 1202
PctI	GAATGC	1 cut(s)	1297
PdiI	GCCGGC	1 cut(s)	1936
PdmI	GAANNNNTTC	1 cut(s)	1143
PfeI	GAWTC	2 cut(s)	1282, 1967
PflFI	GACNNNGTC	1 cut(s)	196
PflMI	CCANNNNNTGG	1 cut(s)	501
PfoI	TCCNGGA	1 cut(s)	246
PkrI	GCNGC	6 cut(s)	224, 401, 616, 630, 1017, 1354
PleI	GAGTC	1 cut(s)	114
PluTI	GGCGCC	2 cut(s)	400, 554
PmaCI	CACGTG	1 cut(s)	987
PmlI	CACGTG	1 cut(s)	987
PpsI	GAGTC	1 cut(s)	114
Ppu21I	YACGTR	2 cut(s)	987, 1197
PpuMI	RGGWCCY	1 cut(s)	1377
PsiI	TTATAA	1 cut(s)	780
Psp124BI	GAGCTC	1 cut(s)	547
Psp5II	RGGWCCY	1 cut(s)	1377
Psp6I	CCWGG	4 cut(s)	246, 663, 737, 827
PspCI	CACGTG	1 cut(s)	987
PspFI	CCCAGC	2 cut(s)	1334, 1580
PspGI	CCWGG	4 cut(s)	246, 663, 737, 827
PspN4I	GGNNCC	5 cut(s)	85, 238, 398, 552, 1531
PspPI	GGNCC	5 cut(s)	83, 250, 556, 646, 1377
PspPPI	RGGWCCY	1 cut(s)	1377
PstI	CTGCAG	1 cut(s)	633
PsuI	RGATCY	1 cut(s)	8
PsyI	GACNNNGTC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	1018
RsaI	GTAC	2 cut(s)	905, 1199
RsaNI	GTAC	2 cut(s)	904, 1198
RseI	CAYNNNNRTG	1 cut(s)	1661
Rsr2I	CGGWCCG	1 cut(s)	556
RsrII	CGGWCCG	1 cut(s)	556
SacI	GAGCTC	1 cut(s)	547
SalI	GTCGAC	1 cut(s)	260
SaqAI	TTAA	3 cut(s)	1479, 1857, 1962
SatI	GCNGC	6 cut(s)	223, 400, 615, 629, 1016, 1353
Sau3AI	GATC	9 cut(s)	8, 423, 789, 976, 1396, 1621, 1894, 1949, 1977
Sau96I	GGNCC	5 cut(s)	83, 250, 556, 646, 1377
SchI	GAGTC	1 cut(s)	114
ScrFI	CCNGG	5 cut(s)	248, 650, 665, 739, 829
SduI	GDGCHC	3 cut(s)	309, 390, 547
SexAI	ACCWGGT	1 cut(s)	663
SfaNI	GCATC	6 cut(s)	1111, 1152, 1753, 1770, 1930, 1947
SfcI	CTRYAG	1 cut(s)	629
SfoI	GGCGCC	2 cut(s)	398, 552
SfuI	TTCGAA	1 cut(s)	1156
SinI	GGWCC	4 cut(s)	250, 556, 646, 1377
SmiMI	CAYNNNNRTG	1 cut(s)	1661
SmlI	CTYRAG	4 cut(s)	1073, 1232, 1478, 1630
SmoI	CTYRAG	4 cut(s)	1073, 1232, 1478, 1630
Sse9I	AATT	5 cut(s)	73, 1340, 1512, 1651, 1812
SspDI	GGCGCC	2 cut(s)	396, 550
SspI	AATATT	1 cut(s)	994
SspMI	CTAG	3 cut(s)	696, 1718, 1845
SstI	GAGCTC	1 cut(s)	547
StyD4I	CCNGG	5 cut(s)	246, 648, 663, 737, 827
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	3 cut(s)	705, 877, 1864
TaiI	ACGT	5 cut(s)	435, 471, 486, 989, 1199
TasI	AATT	5 cut(s)	73, 1340, 1512, 1651, 1812
TatI	WGTACW	1 cut(s)	903
TauI	GCSGC	4 cut(s)	225, 402, 617, 1355
TfiI	GAWTC	2 cut(s)	1282, 1967
Tru1I	TTAA	3 cut(s)	1479, 1857, 1962
Tru9I	TTAA	3 cut(s)	1479, 1857, 1962
TscAI	CASTG	1 cut(s)	506
TseFI	GTSAC	1 cut(s)	1192
TseI	GCWGC	2 cut(s)	628, 1015
Tsp45I	GTSAC	1 cut(s)	1192
TspGWI	ACGGA	2 cut(s)	442, 1553
TspRI	CASTG	1 cut(s)	506
Tth111I	GACNNNGTC	1 cut(s)	196
Van91I	CCANNNNNTGG	1 cut(s)	501
Vha464I	CTTAAG	1 cut(s)	1478
VpaK11BI	GGWCC	4 cut(s)	250, 556, 646, 1377
XapI	RAATTY	1 cut(s)	1812
XceI	RCATGY	1 cut(s)	607
XcmI	CCANNNNNNNNNTGG	1 cut(s)	361
XmiI	GTMKAC	1 cut(s)	261
XmnI	GAANNNNTTC	1 cut(s)	1143
XspI	CTAG	3 cut(s)	696, 1718, 1845
ZraI	GACGTC	1 cut(s)	433

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.